mRNA_S-dermatodea_contig1234.1472.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1234.1472.1
Unique NamemRNA_S-dermatodea_contig1234.1472.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1234.1472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1234contigS-dermatodea_contig1234:10348..10896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size550
Cds size549
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924244.3631144-CDS-S-dermatodea_contig1234:10347..108961622924244.3631144-CDS-S-dermatodea_contig1234:10347..10896Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1234 10348..10896 +
1694079120.484636-CDS-S-dermatodea_contig1234:10347..108961694079120.484636-CDS-S-dermatodea_contig1234:10347..10896Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1234 10348..10896 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1234.1472.1prot_S-dermatodea_contig1234.1472.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1234 10348..10896 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1234.1472.1

>prot_S-dermatodea_contig1234.1472.1 ID=prot_S-dermatodea_contig1234.1472.1|Name=mRNA_S-dermatodea_contig1234.1472.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=183bp
MRRARYEAMASLLLAGRSVALLTSFPATVVRGSRTSSSSSSRNIHVLRFL
KSTSMQSPNHSGGCSSNSAWLGFPRLAVLGREQEATRRFSAMAVTTLVGQ
NIAGRSNVQSHLNSSSKADPDGGETSKRTRKPRHEPSSSNSSTSNASIPA
ASRPPGMGAARGPAESRAAWAAGAAARVRGRGA
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mRNA from alignment at S-dermatodea_contig1234:10348..10896+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1234.1472.1 ID=mRNA_S-dermatodea_contig1234.1472.1|Name=mRNA_S-dermatodea_contig1234.1472.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=549bp|location=Sequence derived from alignment at S-dermatodea_contig1234:10348..10896+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGACGGGCACGGTACGAGGCCATGGCGAGTCTCCTCCTAGCTGGTCG
GAGTGTAGCACTTCTGACCTCCTTCCCCGCCACGGTTGTGCGCGGCAGCA
GGACAAGCAGCAGCAGCAGTAGCCGGAACATCCATGTTCTCCGCTTCCTC
AAGTCAACCTCAATGCAAAGCCCGAACCACAGCGGCGGCTGCAGCAGCAA
CAGCGCCTGGCTCGGCTTCCCCCGCCTGGCCGTGCTTGGACGAGAGCAAG
AGGCAACGCGCCGCTTCTCCGCGATGGCTGTAACCACGCTGGTGGGGCAG
AACATCGCCGGGCGTAGCAACGTGCAGAGTCACCTCAACAGCAGCAGCAA
GGCCGATCCTGACGGCGGCGAAACAAGCAAAAGAACACGAAAGCCTCGAC
ACGAACCATCTAGCAGCAACAGCAGTACGAGCAACGCTTCGATACCCGCA
GCAAGCAGGCCGCCCGGCATGGGAGCTGCCCGAGGCCCTGCGGAGTCGAG
AGCGGCATGGGCCGCGGGTGCTGCGGCGAGGGTTCGCGGGAGAGGGGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1234:10348..10896+

>mRNA_S-dermatodea_contig1234.1472.1 ID=mRNA_S-dermatodea_contig1234.1472.1|Name=mRNA_S-dermatodea_contig1234.1472.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1098bp|location=Sequence derived from alignment at S-dermatodea_contig1234:10348..10896+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGACGGGCACGGTACGAGGCCATGGCGAGTCTCCTCCTAGCTGGTCG
GAGTGTAGCACTTCTGACCTCCTTCCCCGCCACGGTTGTGCGCGGCAGCA
GGACAAGCAGCAGCAGCAGTAGCCGGAACATCCATGTTCTCCGCTTCCTC
AAGTCAACCTCAATGCAAAGCCCGAACCACAGCGGCGGCTGCAGCAGCAA
CAGCGCCTGGCTCGGCTTCCCCCGCCTGGCCGTGCTTGGACGAGAGCAAG
AGGCAACGCGCCGCTTCTCCGCGATGGCTGTAACCACGCTGGTGGGGCAG
AACATCGCCGGGCGTAGCAACGTGCAGAGTCACCTCAACAGCAGCAGCAA
GGCCGATCCTGACGGCGGCGAAACAAGCAAAAGAACACGAAAGCCTCGAC
ACGAACCATCTAGCAGCAACAGCAGTACGAGCAACGCTTCGATACCCGCA
GCAAGCAGGCCGCCCGGCATGGGAGCTGCCCGAGGCCCTGCGGAGTCGAG
AGCGGCATGGGCCGCGGGTGCTGCGGCGAGGGTTCGCGGGAGAGGGGCGA
TGCGACGGGCACGGTACGAGGCCATGGCGAGTCTCCTCCTAGCTGGTCGG
AGTGTAGCACTTCTGACCTCCTTCCCCGCCACGGTTGTGCGCGGCAGCAG
GACAAGCAGCAGCAGCAGTAGCCGGAACATCCATGTTCTCCGCTTCCTCA
AGTCAACCTCAATGCAAAGCCCGAACCACAGCGGCGGCTGCAGCAGCAAC
AGCGCCTGGCTCGGCTTCCCCCGCCTGGCCGTGCTTGGACGAGAGCAAGA
GGCAACGCGCCGCTTCTCCGCGATGGCTGTAACCACGCTGGTGGGGCAGA
ACATCGCCGGGCGTAGCAACGTGCAGAGTCACCTCAACAGCAGCAGCAAG
GCCGATCCTGACGGCGGCGAAACAAGCAAAAGAACACGAAAGCCTCGACA
CGAACCATCTAGCAGCAACAGCAGTACGAGCAACGCTTCGATACCCGCAG
CAAGCAGGCCGCCCGGCATGGGAGCTGCCCGAGGCCCTGCGGAGTCGAGA
GCGGCATGGGCCGCGGGTGCTGCGGCGAGGGTTCGCGGGAGAGGGGCG
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