mRNA_S-dermatodea_contig12338.1470.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12338.1470.1
Unique NamemRNA_S-dermatodea_contig12338.1470.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12338.1470.1 vs. uniprot
Match: A0A7S3K2A4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K2A4_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 8.640e-6
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 3 
Query:   21 GAEHPEVATRLNSLALLLASDGRVEEAEDLHRRALDIARKVYG 149
            G  HP VAT L++LALLL++ G  +EA+ L+ RA+DI  K YG
Sbjct:    1 GPNHPNVATTLSNLALLLSAQGNYDEAKPLYERAIDIDEKTYG 43
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12338.1470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3K2A4_9STRA8.640e-653.49Hypothetical protein (Fragment) n=2 Tax=Aureoumbra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12338contigS-dermatodea_contig12338:4426..5820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size323
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12338.1470.1prot_S-dermatodea_contig12338.1470.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12338 4426..5818 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924244.2085457-CDS-S-dermatodea_contig12338:4425..45391622924244.2085457-CDS-S-dermatodea_contig12338:4425..4539Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12338 4426..4539 -
1694079120.3690064-CDS-S-dermatodea_contig12338:4425..45391694079120.3690064-CDS-S-dermatodea_contig12338:4425..4539Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12338 4426..4539 -
1622924244.217455-CDS-S-dermatodea_contig12338:4980..50711622924244.217455-CDS-S-dermatodea_contig12338:4980..5071Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12338 4981..5071 -
1694079120.3769627-CDS-S-dermatodea_contig12338:4980..50711694079120.3769627-CDS-S-dermatodea_contig12338:4980..5071Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12338 4981..5071 -
1622924244.2254198-CDS-S-dermatodea_contig12338:5702..58181622924244.2254198-CDS-S-dermatodea_contig12338:5702..5818Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12338 5703..5818 -
1694079120.386204-CDS-S-dermatodea_contig12338:5702..58181694079120.386204-CDS-S-dermatodea_contig12338:5702..5818Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12338 5703..5818 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924244.234787-UTR-S-dermatodea_contig12338:5818..58201622924244.234787-UTR-S-dermatodea_contig12338:5818..5820Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12338 5819..5820 -
1694079120.4001-UTR-S-dermatodea_contig12338:5818..58201694079120.4001-UTR-S-dermatodea_contig12338:5818..5820Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12338 5819..5820 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12338.1470.1

>prot_S-dermatodea_contig12338.1470.1 ID=prot_S-dermatodea_contig12338.1470.1|Name=mRNA_S-dermatodea_contig12338.1470.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=107bp
MSVDSQGAEHPEVATRLNSLALLLASDGRVEEAEDLHRRALDIARKVYGP
EHADVATYLNNLARVLKAQDKLAEAEPLQRAALAIGERMLGTNHSDVATY
YNNLSR*
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mRNA from alignment at S-dermatodea_contig12338:4426..5820-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12338.1470.1 ID=mRNA_S-dermatodea_contig12338.1470.1|Name=mRNA_S-dermatodea_contig12338.1470.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1395bp|location=Sequence derived from alignment at S-dermatodea_contig12338:4426..5820- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGATGAGCGTGGACTCCCAGGGCGCCGAGCACCCGGAGGTGGCCACCCGC
CTCAACAGTCTTGCTCTGCTGCTCGCCTCGGATGGGAGGGTTGAGGAAGC
CGAGGACCTACACAGACGGTGAGGGAGAGGTTGCCTGCCTACTTGTAGCT
GTGTGTGCACCTTCACCTTTTGCCTATGTGTCTTTCTCATTTGACAGATC
GTTGACATCCGAATCCCTTCTTTGTCCACGAGGAATCGATCAACCCCGTC
TCCCTTTCCCCGGGTGCTGTAAACGCCTTCGGTTTCCATGTTTGTTGTTG
TCTCGGATCGGGTTCATCGAAACGTTTCCGCAACTGCTGTGTAACCTCCC
GCTAGAGGAAAGGTTGTGGGTTCGAATACCAGCCAGGGCGTTTTTTTTGT
TTCTCTTTTGTTTATCTTTATCTTCCTACCGCGGAATATACGAGGGCGAT
AAACGGACCTACGTAGCCACGCTTAAGTTTGCCTTGCATCCACGGTGGTT
TGCACTTTGGTGCATCCGTCACTGCGATGATACGGTACTTATTGTAATAC
AGAGCACCCGTAGCATCGATACTCTGTGCGAAAACGGACTCGGCCGAAAC
GGTAAGCAACCGTGATTTCATCATCGATATTATTTGTATATTGTAGAGAA
GAAAGGTTTGTGATGATGTGGTGGTACCTTACGCATCCCCTCTCGTTGGT
GTGTCGCGCTTTTTTTTTCCAACGTCCCCCCCCCCCCCGGCTGAAACAGG
GCGTTGGATATCGCTCGCAAAGTTTACGGGCCGGAGCATGCCGACGTGGC
GACATACCTCAACAACCTGGCGAGGGTTCTCAAGGCTCAGGTGAGTCTTT
TTATTTTATTTTATTTTTTATTTGGTAGATTGTTGTGTAATGGTTTAGTC
TTTTTTTTACCACGATGGTCTCGCTGTTGGATGGGGCATTGGGGGTGTCG
CCATGTTAGTATCGCGTTGGTTTCGTGCATAACATGAATGAGCAATTGTG
TGGATAGGGGGAGCCATCTTTGTTTCTGACTCGTGTTTGGTATTGTAATG
TATTCATAGTACAGGAGGACACGAGGCCCTTTTTGTTTTTTTTCAATGCC
AGCTCATATTTGGCTCCATTCTTACGTGCGACCACGGCTAGTTATAACAC
GAGTTAGTGTGAGAACTACTGTACCAATAATATAATAGTATGTTTCTAAA
CGCCCCACGCGTTATACCCGTCTATGCGCGCGCGCGGCCTCTTAACGTTG
TCAAAAACTTGTGTTGGCTAACTCTCAACAGGACAAACTCGCGGAGGCGG
AGCCGTTGCAGCGCGCTGCCCTTGCCATCGGCGAGCGCATGCTCGGCACG
AACCACTCGGACGTCGCCACGTACTACAACAACCTCTCCAGGTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12338:4426..5820-

>mRNA_S-dermatodea_contig12338.1470.1 ID=mRNA_S-dermatodea_contig12338.1470.1|Name=mRNA_S-dermatodea_contig12338.1470.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at S-dermatodea_contig12338:4426..5820- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGCGTGGACTCCCAGGGCGCCGAGCACCCGGAGGTGGCCACCCGCCT
CAACAGTCTTGCTCTGCTGCTCGCCTCGGATGGGAGGGTTGAGGAAGCCG
AGGACCTACACAGACGATGAGCGTGGACTCCCAGGGCGCCGAGCACCCGG
AGGTGGCCACCCGCCTCAACAGTCTTGCTCTGCTGCTCGCCTCGGATGGG
AGGGTTGAGGAAGCCGAGGACCTACACAGACGGGCGTTGGATATCGCTCG
CAAAGTTTACGGGCCGGAGCATGCCGACGTGGCGACATACCTCAACAACC
TGGCGAGGGTTCTCAAGGCTCAGGGCGTTGGATATCGCTCGCAAAGTTTA
CGGGCCGGAGCATGCCGACGTGGCGACATACCTCAACAACCTGGCGAGGG
TTCTCAAGGCTCAGGACAAACTCGCGGAGGCGGAGCCGTTGCAGCGCGCT
GCCCTTGCCATCGGCGAGCGCATGCTCGGCACGAACCACTCGGACGTCGC
CACGTACTACAACAACCTCTCCAGGTAAGACAAACTCGCGGAGGCGGAGC
CGTTGCAGCGCGCTGCCCTTGCCATCGGCGAGCGCATGCTCGGCACGAAC
CACTCGGACGTCGCCACGTACTACAACAACCTCTCCAGGTAA
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