mRNA_S-dermatodea_contig12333.1468.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12333.1468.1
Unique NamemRNA_S-dermatodea_contig12333.1468.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12333.1468.1 vs. uniprot
Match: D8LE96_ECTSI (Ubiquitin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE96_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 1.280e-30
Identity = 74/116 (63.79%), Postives = 89/116 (76.72%), Query Frame = 1 
Query:    4 IIFVTGLRGLTGNRAQTLERCVKNVKGGRAVVTSLKVMEAVLQLFRKEASSYERCSRSDVIHDLEAAYGLTELLLRELESYVASSRNA-FPDTSKPLSPAA------PAPLTVSSG 330
            I+ V GLRGL G+RAQTL+RCVKNV+ GRAVVTSLKV+EAVLQ + K+A+SYE  SR DVIH+LEA  GLTELLLRELESYVA SR++  P+ +   S AA      P+P  VS+G
Sbjct:  866 ILPVAGLRGLRGHRAQTLQRCVKNVEEGRAVVTSLKVLEAVLQNYPKDATSYEVLSRRDVIHNLEAESGLTELLLRELESYVAGSRSSTLPEDTSDGSLAADHSNNPPSPSPVSAG 981
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12333.1468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LE96_ECTSI1.280e-3063.79Ubiquitin domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12333contigS-dermatodea_contig12333:1888..5113 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue9.8e-27
Seed eggNOG ortholog2880.D8LE96
KEGG koko:K11840,ko:K11869
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1866@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size378
Cds size375
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12333.1468.1prot_S-dermatodea_contig12333.1468.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12333 1890..5113 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924244.0600195-CDS-S-dermatodea_contig12333:1889..20341622924244.0600195-CDS-S-dermatodea_contig12333:1889..2034Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12333 1890..2034 -
1694079120.269961-CDS-S-dermatodea_contig12333:1889..20341694079120.269961-CDS-S-dermatodea_contig12333:1889..2034Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12333 1890..2034 -
1622924244.072052-CDS-S-dermatodea_contig12333:3762..38811622924244.072052-CDS-S-dermatodea_contig12333:3762..3881Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12333 3763..3881 -
1694079120.2800512-CDS-S-dermatodea_contig12333:3762..38811694079120.2800512-CDS-S-dermatodea_contig12333:3762..3881Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12333 3763..3881 -
1622924244.0828807-CDS-S-dermatodea_contig12333:5002..51131622924244.0828807-CDS-S-dermatodea_contig12333:5002..5113Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12333 5003..5113 -
1694079120.2882795-CDS-S-dermatodea_contig12333:5002..51131694079120.2882795-CDS-S-dermatodea_contig12333:5002..5113Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12333 5003..5113 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12333.1468.1

>prot_S-dermatodea_contig12333.1468.1 ID=prot_S-dermatodea_contig12333.1468.1|Name=mRNA_S-dermatodea_contig12333.1468.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=125bp
CIIFVTGLRGLTGNRAQTLERCVKNVKGGRAVVTSLKVMEAVLQLFRKEA
SSYERCSRSDVIHDLEAAYGLTELLLRELESYVASSRNAFPDTSKPLSPA
APAPLTVSSGCDGSISDGDRRPPGG
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mRNA from alignment at S-dermatodea_contig12333:1888..5113-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12333.1468.1 ID=mRNA_S-dermatodea_contig12333.1468.1|Name=mRNA_S-dermatodea_contig12333.1468.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3226bp|location=Sequence derived from alignment at S-dermatodea_contig12333:1888..5113- (Saccorhiza dermatodea SderLu1190fm monoicous)
TGCATCATCTTCGTGACAGGCCTGCGAGGCCTTACGGGTAACAGAGCGCA
GACCTTGGAGCGCTGCGTGAAGAACGTCAAGGGCGGTCGGGCCGTGGTTA
CGTCTCTCAAGGTTTGTGTTTTCGCCCAGAACAGAACGCAGCCTCCCTGT
TTTTGTTGTTTGGGGGGGAAGGCATGTTGGGGGAGGGGGAGGGGGAGGGG
GGCGACTCGAGTTTTGCATGCCTTAGGTGTCGAGCAGTTGACCACGCGTC
CTCGGGAGGATATGACGGAGCATTGTTCCCACAGGATTGATCGATCGCCT
GTGGCCAATCGTTGCTTCCTATTTTGCCAAATGTGGCCCACAAAGAGTGT
TACTTCGTGTTTTTCTTCGCGCATACATAATATGATATAAAAAATATAAT
TGCGTCGCTGAGGAGCTGAGGAGGCGTTTTGTTGCGAGGACGCTGCACAG
CCTCCATGGGAGCGAAATAGTCGTTGGGTTATGTGCTCCCGCTAACCGTT
GTGCATGTCACGTGTAGCTGGCTTTTTGCCTTTTGGAGTGTATCGCGCAT
CTGATAAGAGAGGCATCTGAGAAGAGAGTCGGTTCGGACTATACCGATGG
GCTGTAGGTGTGAAGATATATCAATGAACAGAAGCTGTAAACTCAGAATA
ATCAATAAAACCAAGTAATCAATAAATTCACTAAAACACTTGAATTAATC
AGTAAATTACTAAGAGCAATCAAGTATCAATCAATCAATCAAATATTTGA
CATTAATGAGTAAAATCAACCACTCAATCGAGTAAAATCAGTGAAATGTT
ATTAATTAAAGAAACGATTACCGATTGTGTATATTGGTTTTAGACTAGGA
TGCTGTCTGATGCCGAACAACTTGATGTTTGTTTTGAGCGTTTTTTTTTT
TTATAAAAGCGAAAAGACAGCAGCGACACGCACACTAGCTCGACCGCGTT
CGACCTCTGTGTCGCGTTCCGTCGGCATATCGTCCTGCCAACGCACACCT
CACACGGGCGTAGCAGTGGCTACCCACTAGTCCATCAATATATGACTAAA
AGCAATCAAATATCAACCAATAACCACCAATAAATAAAACCAAAACAACC
AATCCATACGATACGATCACTACTACTGTACCACAGTATATAAATCACTC
AATAGCATCGATCCACCAATAAATCAAACCATTTAACATATACTTCGAAG
TTTATCGCTTGTTTTTTTTGTTTTTTTTACAGGTGATGGAGGCGGTCCTC
CAGCTCTTTCGGAAAGAAGCCTCGAGCTACGAGCGGTGCTCGAGGAGCGA
CGTCATCCACGACCTTGAGGCAGCGTACGGCCTTACCGAGCTTCTCCTAA
GGTGGGAGCATCGGCCTTGCAACGGCAACCAATCGTTTTGAGGCTGACGC
CGCATCGCGAGCGCAAGCGATAATAGGGCCAAATGAGAACAGATGTCGTG
AGATGTCGTGAGATGTCGTGAGATGTCGTGAGATGTCGTGAGCTCCATGG
CCGCCGTCCGGCTCCGGGGATCGTGATCGGAACCCATGGGATGTGCTAAC
TGCGATCCCGATAGAAATTATGCGCTCTCATGGCTCATGGAGCGATTATA
TTCTATGGTGAAAACTATTATTACTATTTAATAGTGCAAAAGACCGCACT
ATTTGGAACATACTTACCGAAGCATAGCAATAAAGCATATATTAGTAGTG
ATCGTGATAGTGATAGTGATAGTGATAGTGGTAGTGGTTAGCCACGACTA
TAACACGCCCGTGAGGTGTGCGGTGGTACTAATAGGACGCGGTACAGTAG
CTGTATGATGTGCTTGTATGGTGTGTGACGTACTATTCTATTGTATTAAT
ATGTATAATGTATAATGTATCATGTATCATGTATCATGTATAACCCACGG
CAAGCAGGTGTGTGTTGACCGATAAGATAATGTATGATGTAATATGTATT
ACTATTAGGTAGCCACAGCTACGCTCGCGAGGTGTAAAATCAAGTTGTTT
GGCTCAGCACAAAAACCTGGTTGTTGTTTGGCATCAGAAATGGTATAGGG
AAAAAAAGTTCAAAAAGCGCTACTAAGTATTAATATTATACTTGTAATAA
AGATGTAAAATACATGGAGGACACGGCTGTCTCGCAACAACAAAAACTAT
ACAAGTAGTCCGAGAGCGGAGAGAGCCTTGTACCGTATACTTGTATTAAT
AGCTGTTATAAAGTGAGGTCCTTGTTGGAGTTGTTGTGTGACACGATGCT
ACACTATTAATAGGGCTATTAATAGGGCTATTAATAGGGCTATTAATAGG
TTACTCTCGTTAGGCTTGTAGTCTACACTCACTTGTTATTGGTTCTCACA
GCTCTTAGAGGGGAGAGCGCTCGCTGGGTGTGTGAGCCCTGCTGGGTACC
TCACACACGCGTAGTGATGCTACATGCTACATATGTGGAACTCCTGCGCC
ATATACATTTCTACGGATATCATAGCCTCAACGCTCTACGGAGATCGACA
CCGTATCACCATAACATAGCCCCATTGATTGGGTTTCAAAATAGCTATTA
TACCGGTACAATAGCGTAGTACTCTCAAAATACATTAATACTGAAACTAA
AACTTGAACAAACATGACTGAAAAACAGCTTTTATCAAAATCTATAAATA
ACTACTTGTACTGCAGTAAAAAAATAGGTAAATAGTATACCGTGTCAAGT
CAGTAGCAGCGTTTGCCGCACTACACATGAGTGAAAACATCGAGGGGGTA
TCATACTGCGGCCACCGATGACAATCGCCCCGTTCGCCGATGCGGCCACT
CATCAAATGACATGAACGCTCTTTTGTCCACTCATTCGTCATAACCCTAC
CCTCCTATCCTCCCATCCTCCCCGCAAACGCAAGGATGGATGCTCCATAG
CAGCTGATATCCTCCTCTTGTGAAACGCAGCCTGCCCGGCAAAAACCCGG
CATATCGCTCCCCCCGTCTCGGCATTGTTGGAACGCGTAGTCTATGCTCG
TCTGGATACGACATGCGTTTAACATAAGTACATAATTACCCCCCCCCCCC
CTACACCTACTACTTGTGTCCCCATTCAGAGAGCTGGAGAGTTACGTGGC
GAGCTCGAGAAACGCCTTCCCCGACACCAGCAAACCCCTCTCGCCGGCCG
CCCCCGCACCTCTCACGGTGTCTTCGGGGTGCGATGGGAGTATCTCGGAT
GGAGATCGTCGACCGCCCGGTGGAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12333:1888..5113-

>mRNA_S-dermatodea_contig12333.1468.1 ID=mRNA_S-dermatodea_contig12333.1468.1|Name=mRNA_S-dermatodea_contig12333.1468.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at S-dermatodea_contig12333:1888..5113- (Saccorhiza dermatodea SderLu1190fm monoicous)
TGCATCATCTTCGTGACAGGCCTGCGAGGCCTTACGGGTAACAGAGCGCA
GACCTTGGAGCGCTGCGTGAAGAACGTCAAGGGCGGTCGGGCCGTGGTTA
CGTCTCTCAAGTGCATCATCTTCGTGACAGGCCTGCGAGGCCTTACGGGT
AACAGAGCGCAGACCTTGGAGCGCTGCGTGAAGAACGTCAAGGGCGGTCG
GGCCGTGGTTACGTCTCTCAAGGTGATGGAGGCGGTCCTCCAGCTCTTTC
GGAAAGAAGCCTCGAGCTACGAGCGGTGCTCGAGGAGCGACGTCATCCAC
GACCTTGAGGCAGCGTACGGCCTTACCGAGCTTCTCCTAAGGTGATGGAG
GCGGTCCTCCAGCTCTTTCGGAAAGAAGCCTCGAGCTACGAGCGGTGCTC
GAGGAGCGACGTCATCCACGACCTTGAGGCAGCGTACGGCCTTACCGAGC
TTCTCCTAAGAGAGCTGGAGAGTTACGTGGCGAGCTCGAGAAACGCCTTC
CCCGACACCAGCAAACCCCTCTCGCCGGCCGCCCCCGCACCTCTCACGGT
GTCTTCGGGGTGCGATGGGAGTATCTCGGATGGAGATCGTCGACCGCCCG
GTGGAAGAGCTGGAGAGTTACGTGGCGAGCTCGAGAAACGCCTTCCCCGA
CACCAGCAAACCCCTCTCGCCGGCCGCCCCCGCACCTCTCACGGTGTCTT
CGGGGTGCGATGGGAGTATCTCGGATGGAGATCGTCGACCGCCCGGTGGA
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