mRNA_S-dermatodea_contig12324.1465.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12324.1465.1
Unique NamemRNA_S-dermatodea_contig12324.1465.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12324.1465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12324contigS-dermatodea_contig12324:3594..4720 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size279
Cds size276
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12324.1465.1prot_S-dermatodea_contig12324.1465.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12324 3595..4720 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924243.8152485-CDS-S-dermatodea_contig12324:3594..37531622924243.8152485-CDS-S-dermatodea_contig12324:3594..3753Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12324 3595..3753 -
1694079120.1015995-CDS-S-dermatodea_contig12324:3594..37531694079120.1015995-CDS-S-dermatodea_contig12324:3594..3753Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12324 3595..3753 -
1622924243.8238142-CDS-S-dermatodea_contig12324:4123..41701622924243.8238142-CDS-S-dermatodea_contig12324:4123..4170Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12324 4124..4170 -
1694079120.1094086-CDS-S-dermatodea_contig12324:4123..41701694079120.1094086-CDS-S-dermatodea_contig12324:4123..4170Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12324 4124..4170 -
1622924243.833778-CDS-S-dermatodea_contig12324:4650..47201622924243.833778-CDS-S-dermatodea_contig12324:4650..4720Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12324 4651..4720 -
1694079120.1171765-CDS-S-dermatodea_contig12324:4650..47201694079120.1171765-CDS-S-dermatodea_contig12324:4650..4720Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12324 4651..4720 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12324.1465.1

>prot_S-dermatodea_contig12324.1465.1 ID=prot_S-dermatodea_contig12324.1465.1|Name=mRNA_S-dermatodea_contig12324.1465.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=92bp
AEAVEDESDNNSSDGDDTIDPVRDNSDDSDYKEEDCSDQEEGSEDGADSE
LEEDSDSDFEISTKAKKPRRASSLPKTVPKNALKITPNGSSA
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mRNA from alignment at S-dermatodea_contig12324:3594..4720-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12324.1465.1 ID=mRNA_S-dermatodea_contig12324.1465.1|Name=mRNA_S-dermatodea_contig12324.1465.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1127bp|location=Sequence derived from alignment at S-dermatodea_contig12324:3594..4720- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCAGAGGCGGTCGAGGATGAATCAGACAACAACAGCAGTGACGGTGATGA
CACCATCGATCCAGTCAGAGGTGAGTGGGCGTAGCGCACCAAAGCACCAA
CCTAAAGCCATGCCATGATCCGTGATATTCCTACACAGAGGACCACGGAC
CACTGCTTGTGCGGAGCCTACTTGCGCCACTGACTGCACGTGCCACCGCT
GAGAACCAGTAGAATTTTCTGGTTTCGATGCGCTTTGGCCAGAAAGTTTC
ATACTACAGTACAAGTATTACTATTTATTGCTGTCTGTCTGGTATTGTCC
GACACACAAGTGCAGATTTTCAAAGTTCTGTTCAGTTTTAGACTCGCGAT
CTCTGCACACACATTGCATCATGGTTGGAGATCACATACTCTGTGCATGT
TGCATACATAGGCGGCACAGGGCATGTCTTTTCCACCTCGACGCTCTCGG
TTGGCGCGTTAGGTGCTGATTTTGACATAGACATATATACTATCTTGTGA
GTAACACCATACAATCTACATGCTCCGTGTGGTGTGGTCTTCCCTTGCAG
ACAACAGCGACGACAGCGACTACAAGGAGGAAGACTGCAGTGACCAGGTA
TGATATGGTAGCTCTTCGACCTTGCCGTTTGGCCCTTCTCTTTCAACCGC
CCGGACGGGTTCTTGAGACCAGCATCATCAGCGTGCTCAACATTTGTCGC
AGCTGTAAGACGCCCGAAAAAGAAGCAAGGGTTTGAACCAGATACTCCAT
CAACAGAGGCTAGCTCTGCACTCGAAAAATGCGCGCGCGAAGGATCCCGA
TTTTGCGCTCGATGGGACACCGGTTTGTTTTCGCGCGCGCTTGCCCTGCA
AAATCGCGCAACGCCGCAAATATACGTAAAAGACGAGACCTCACCCGGTG
TTTCGCGACTGACTTAATCGGCAACGCGCGTGCCTCCCGCTCGAACGCTT
AACCTTGCCTCCCTCAGGAAGAAGGCTCGGAGGACGGCGCGGACAGCGAG
CTGGAAGAAGACAGCGACAGCGATTTCGAGATCAGCACCAAAGCAAAAAA
GCCCAGGCGCGCCTCTTCCCTCCCCAAAACCGTTCCAAAGAATGCTCTCA
AGATAACTCCGAACGGTTCCTCTGCAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12324:3594..4720-

>mRNA_S-dermatodea_contig12324.1465.1 ID=mRNA_S-dermatodea_contig12324.1465.1|Name=mRNA_S-dermatodea_contig12324.1465.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at S-dermatodea_contig12324:3594..4720- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCAGAGGCGGTCGAGGATGAATCAGACAACAACAGCAGTGACGGTGATGA
CACCATCGATCCAGTCAGAGGCAGAGGCGGTCGAGGATGAATCAGACAAC
AACAGCAGTGACGGTGATGACACCATCGATCCAGTCAGAGACAACAGCGA
CGACAGCGACTACAAGGAGGAAGACTGCAGTGACCAGACAACAGCGACGA
CAGCGACTACAAGGAGGAAGACTGCAGTGACCAGGAAGAAGGCTCGGAGG
ACGGCGCGGACAGCGAGCTGGAAGAAGACAGCGACAGCGATTTCGAGATC
AGCACCAAAGCAAAAAAGCCCAGGCGCGCCTCTTCCCTCCCCAAAACCGT
TCCAAAGAATGCTCTCAAGATAACTCCGAACGGTTCCTCTGCAGAAGAAG
GCTCGGAGGACGGCGCGGACAGCGAGCTGGAAGAAGACAGCGACAGCGAT
TTCGAGATCAGCACCAAAGCAAAAAAGCCCAGGCGCGCCTCTTCCCTCCC
CAAAACCGTTCCAAAGAATGCTCTCAAGATAACTCCGAACGGTTCCTCTG
CA
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