mRNA_S-dermatodea_contig12321.1463.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12321.1463.1
Unique NamemRNA_S-dermatodea_contig12321.1463.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12321.1463.1 vs. uniprot
Match: A0A6H5JYA8_9PHAE (Sm domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JYA8_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 2.890e-14
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:  265 APAQTAGGKRSPSDFLKTVLGRPVVVKLNSGIDYRG 372
            APAQT GGKRSPSDFLKTVLGRPVVVKLNSGIDYRG
Sbjct:   63 APAQTGGGKRSPSDFLKTVLGRPVVVKLNSGIDYRG 98
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BLAST of mRNA_S-dermatodea_contig12321.1463.1 vs. uniprot
Match: A0A448Z717_9STRA (Sm domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z717_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.670e-9
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:  274 QTAGGKRSPSDFLKTVLGRPVVVKLNSGIDYRG 372
            QT G KRSPSDFLK+VLGRP +VKLNSGI+YRG
Sbjct:   20 QTGGKKRSPSDFLKSVLGRPAIVKLNSGIEYRG 52
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BLAST of mRNA_S-dermatodea_contig12321.1463.1 vs. uniprot
Match: A0A7S2IZG2_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2IZG2_9EUKA)

HSP 1 Score: 58.2 bits (139), Expect = 1.530e-8
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:  256 AVAAPAQTAGGKRSPSDFLKTVLGRPVVVKLNSGIDYRG 372
            A AAPA     K +PSDFLKTVLGRPVVVKLNSG+DYRG
Sbjct:   23 APAAPA----AKSNPSDFLKTVLGRPVVVKLNSGVDYRG 57
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BLAST of mRNA_S-dermatodea_contig12321.1463.1 vs. uniprot
Match: A9T4B1_PHYPA (Predicted protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A9T4B1_PHYPA)

HSP 1 Score: 57.4 bits (137), Expect = 2.190e-8
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:  262 AAPAQTAGGKRSPSDFLKTVLGRPVVVKLNSGIDYRG 372
            AA AQ  G  ++P+DFLK++ GRPVVVKLNSG+DYRG
Sbjct:    5 AASAQPTGSAKTPNDFLKSIKGRPVVVKLNSGVDYRG 41
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BLAST of mRNA_S-dermatodea_contig12321.1463.1 vs. uniprot
Match: A0A1E7EU50_9STRA (Lsm6 protein-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EU50_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.090e-7
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:  262 AAPAQTAGGKRSPSDFLKTVLGRPVVVKLNSGIDYRG 372
            AAP  T   KR+PSDFLK+VLGRP VVKLNSGI+YRG
Sbjct:   16 AAPEDT---KRTPSDFLKSVLGRPAVVKLNSGIEYRG 49
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BLAST of mRNA_S-dermatodea_contig12321.1463.1 vs. uniprot
Match: A0A0L8G189_OCTBM (Sm domain-containing protein n=2 Tax=Octopus TaxID=6643 RepID=A0A0L8G189_OCTBM)

HSP 1 Score: 55.1 bits (131), Expect = 1.330e-7
Identity = 23/31 (74.19%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:  280 AGGKRSPSDFLKTVLGRPVVVKLNSGIDYRG 372
            +G K++PSDFLK ++GRPVVVKLNSG+DYRG
Sbjct:    2 SGRKQTPSDFLKQIIGRPVVVKLNSGVDYRG 32
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BLAST of mRNA_S-dermatodea_contig12321.1463.1 vs. uniprot
Match: A0A194YPW9_SORBI (Sm domain-containing protein n=1 Tax=Sorghum bicolor TaxID=4558 RepID=A0A194YPW9_SORBI)

HSP 1 Score: 55.5 bits (132), Expect = 1.410e-7
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:  268 PAQTAGGK-RSPSDFLKTVLGRPVVVKLNSGIDYRG 372
            PA  AGG  ++PSDFLK++ GRPVVVKLNSG+DYRG
Sbjct:   11 PASGAGGTVKTPSDFLKSIRGRPVVVKLNSGVDYRG 46
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BLAST of mRNA_S-dermatodea_contig12321.1463.1 vs. uniprot
Match: A0A0G4IMQ5_PLABS (Sm domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IMQ5_PLABS)

HSP 1 Score: 54.7 bits (130), Expect = 1.790e-7
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 1 
Query:  289 KRSPSDFLKTVLGRPVVVKLNSGIDYRG 372
            KRSP+DFLKTVLGRPV VKLNSG++YRG
Sbjct:    3 KRSPADFLKTVLGRPVYVKLNSGVEYRG 30
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BLAST of mRNA_S-dermatodea_contig12321.1463.1 vs. uniprot
Match: A0A8J9X496_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X496_PHATR)

HSP 1 Score: 54.3 bits (129), Expect = 1.900e-7
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 1 
Query:  289 KRSPSDFLKTVLGRPVVVKLNSGIDYRG 372
            KRSPSDFLK+VLGRPV VKLNSGI+YRG
Sbjct:    2 KRSPSDFLKSVLGRPVQVKLNSGIEYRG 29
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BLAST of mRNA_S-dermatodea_contig12321.1463.1 vs. uniprot
Match: A0A7S0FIP0_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FIP0_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.270e-7
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:  256 AVAAPA-QTAGGKRSPSDFLKTVLGRPVVVKLNSGIDYRG 372
            A A PA + A  KRSPSDFLK VLGRPV V+LNSG DY+G
Sbjct:   18 AAAVPADEAATNKRSPSDFLKAVLGRPVNVRLNSGTDYKG 57
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12321.1463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYA8_9PHAE2.890e-1497.22Sm domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A448Z717_9STRA2.670e-981.82Sm domain-containing protein n=1 Tax=Pseudo-nitzsc... [more]
A0A7S2IZG2_9EUKA1.530e-876.92Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A9T4B1_PHYPA2.190e-867.57Predicted protein n=2 Tax=Physcomitrium patens Tax... [more]
A0A1E7EU50_9STRA1.090e-775.68Lsm6 protein-like protein n=1 Tax=Fragilariopsis c... [more]
A0A0L8G189_OCTBM1.330e-774.19Sm domain-containing protein n=2 Tax=Octopus TaxID... [more]
A0A194YPW9_SORBI1.410e-772.22Sm domain-containing protein n=1 Tax=Sorghum bicol... [more]
A0A0G4IMQ5_PLABS1.790e-785.71Sm domain-containing protein n=1 Tax=Plasmodiophor... [more]
A0A8J9X496_PHATR1.900e-789.29Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A7S0FIP0_9STRA2.270e-770.00Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12321contigS-dermatodea_contig12321:5653..6024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue2.2e-10
Seed eggNOG ortholog2880.D7G3Y6
Preferred nameLSM6
KEGG rclassRC00004
KEGG koko:K12625,ko:K12769,ko:K13356
KEGG ReactionR09470
KEGG Pathwayko00073,ko03018,ko03040,ko04113,ko04146,ko04212,map00073,map03018,map03040,map04113,map04146,map04212
KEGG ModuleM00354,M00396,M00397
GOsGO:0000288,GO:0000291,GO:0000375,GO:0000377,GO:0000398,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005688,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008380,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0022613,GO:0030490,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0035770,GO:0036464,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0046700,GO:0046982,GO:0046983,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:0120115,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1990726,GO:1990904
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsCOG1958@1,KOG1783@2759
EC1.2.1.84
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03000,ko03019,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSm-like protein LSm6
Ec32 orthologEc-19_000790.1
Exons1
Model size373
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924243.7123559-CDS-S-dermatodea_contig12321:5652..60241622924243.7123559-CDS-S-dermatodea_contig12321:5652..6024Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12321 5653..6024 +
1694079120.0561159-CDS-S-dermatodea_contig12321:5652..60241694079120.0561159-CDS-S-dermatodea_contig12321:5652..6024Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12321 5653..6024 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12321.1463.1prot_S-dermatodea_contig12321.1463.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12321 5653..6024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12321.1463.1

>prot_S-dermatodea_contig12321.1463.1 ID=prot_S-dermatodea_contig12321.1463.1|Name=mRNA_S-dermatodea_contig12321.1463.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=124bp
TQPANCDTNTAKTNLDPCTRHYSSSTGPPAMTDSTVPPPPPPPKDDAVAA
AAKDAEGDEEGDEGEDVPMTTASAAAPPAATVAAVAVAAPAQTAGGKRSP
SDFLKTVLGRPVVVKLNSGIDYRG
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mRNA from alignment at S-dermatodea_contig12321:5653..6024+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12321.1463.1 ID=mRNA_S-dermatodea_contig12321.1463.1|Name=mRNA_S-dermatodea_contig12321.1463.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=372bp|location=Sequence derived from alignment at S-dermatodea_contig12321:5653..6024+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACGCAGCCCGCCAACTGCGACACGAACACAGCAAAAACCAACCTCGATCC
TTGCACGCGACACTACTCGAGCTCGACAGGACCACCCGCCATGACAGACT
CCACAGTGCCACCACCACCACCTCCGCCCAAGGATGATGCCGTGGCGGCA
GCCGCCAAGGATGCCGAGGGCGATGAGGAGGGAGACGAAGGGGAGGATGT
ACCTATGACAACCGCTTCTGCTGCTGCCCCGCCAGCCGCGACGGTAGCCG
CTGTGGCAGTGGCTGCGCCCGCGCAGACGGCCGGGGGCAAGCGGTCTCCC
AGCGACTTCTTGAAGACGGTGCTGGGGCGGCCGGTGGTCGTGAAGCTCAA
TTCCGGGATAGATTACAGGGGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig12321:5653..6024+

>mRNA_S-dermatodea_contig12321.1463.1 ID=mRNA_S-dermatodea_contig12321.1463.1|Name=mRNA_S-dermatodea_contig12321.1463.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at S-dermatodea_contig12321:5653..6024+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACGCAGCCCGCCAACTGCGACACGAACACAGCAAAAACCAACCTCGATCC
TTGCACGCGACACTACTCGAGCTCGACAGGACCACCCGCCATGACAGACT
CCACAGTGCCACCACCACCACCTCCGCCCAAGGATGATGCCGTGGCGGCA
GCCGCCAAGGATGCCGAGGGCGATGAGGAGGGAGACGAAGGGGAGGATGT
ACCTATGACAACCGCTTCTGCTGCTGCCCCGCCAGCCGCGACGGTAGCCG
CTGTGGCAGTGGCTGCGCCCGCGCAGACGGCCGGGGGCAAGCGGTCTCCC
AGCGACTTCTTGAAGACGGTGCTGGGGCGGCCGGTGGTCGTGAAGCTCAA
TTCCGGGATAGATTACAGGGGTACGCAGCCCGCCAACTGCGACACGAACA
CAGCAAAAACCAACCTCGATCCTTGCACGCGACACTACTCGAGCTCGACA
GGACCACCCGCCATGACAGACTCCACAGTGCCACCACCACCACCTCCGCC
CAAGGATGATGCCGTGGCGGCAGCCGCCAAGGATGCCGAGGGCGATGAGG
AGGGAGACGAAGGGGAGGATGTACCTATGACAACCGCTTCTGCTGCTGCC
CCGCCAGCCGCGACGGTAGCCGCTGTGGCAGTGGCTGCGCCCGCGCAGAC
GGCCGGGGGCAAGCGGTCTCCCAGCGACTTCTTGAAGACGGTGCTGGGGC
GGCCGGTGGTCGTGAAGCTCAATTCCGGGATAGATTACAGGGGT
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