prot_S-dermatodea_contig12313.1459.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig12313.1459.1
Unique Nameprot_S-dermatodea_contig12313.1459.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length228
Homology
BLAST of mRNA_S-dermatodea_contig12313.1459.1 vs. uniprot
Match: A0A6H5KBW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW0_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 5.230e-24
Identity = 60/114 (52.63%), Postives = 73/114 (64.04%), Query Frame = 0
Query:    1 MLEGRPDGGFHAYAPEVTVTHRVDLDALRRSDDVVARTYERPRGRALPKWGEDGDGSVEDMPLSHQSPPAPASKWGSSGNGLG-EPWECHACTFVNEDPACRTVCEMCSTRRPS 113
            MLE R DGG+  ++PE+    R    A +R   VVARTYERPRGR+LPKW    D +V   PL    PP PASK G  G+G   +PW C ACT++NEDPA R  CE+C+T RPS
Sbjct:  819 MLERRVDGGYQIFSPEI---ERDSPIAAQRG--VVARTYERPRGRSLPKWDRSDD-AVSTRPLP-PPPPRPASKLGLVGSGFSHQPWNCPACTYLNEDPAFRAACEICNTPRPS 925          
BLAST of mRNA_S-dermatodea_contig12313.1459.1 vs. uniprot
Match: D7G1S7_ECTSI (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1S7_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.870e-23
Identity = 91/292 (31.16%), Postives = 113/292 (38.70%), Query Frame = 0
Query:    1 MLEGRPDGGFHAYAPEVTVTHRVDLDALRRSDDVVARTYERPRGRALPKWGEDGDG-SVEDMPLSHQSPPAPASKWGSSGNGLGE-PWECHACTFVNEDPACRTVCEMCSTRRPSGVFFA-----------SHEEGWGPTSTGAAVGREGSL-------------------------------------------MTPSSALSSAAVRAAESGAVSGRNHPLDGVTVGSDDEAVDGILGGVSPGAGASPPFGRGVQTQRHGKGAASYDS------------DWEGFGRASFG 224
            MLE R DGG+  ++PE+    R    A +R   VVARTYERPRGR+LPKW    D  S    P        PASK G  G+G  + PW C ACT++NEDPA R  CE+C+T RPS    A              + W  +    + G                                                + P   + +        G       P     V  DD  VDGILGGVSPG GA P      Q      G+A+  S            +W+GFG  SFG
Sbjct:    1 MLERRVDGGYQIFSPEI---ERDSPIAAQRG--VVARTYERPRGRSLPKWDRTDDAVSTRPAPXXXXXXXRPASKLGLIGSGFSQQPWNCPACTYLNEDPAFRAACEICNTPRPSAAADAVGTGTSGDGGEQRHDDWDDSEVLKSCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPPPQIEACIPSGFSVGGGEAGGLPXXXXXV--DDNEVDGILGGVSPGGGAFPVVSGAYQAASGHCGSATAASAAALGGGWEAGDEWQGFGSGSFG 285          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12313.1459.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KBW0_9PHAE5.230e-2452.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1S7_ECTSI1.870e-2331.16RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.20.28.140coord: 82..123
e-value: 1.1E-7
score: 33.5
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 83..111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12313contigS-dermatodea_contig12313:181..1723 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12313.1459.1mRNA_S-dermatodea_contig12313.1459.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig12313 152..2821 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig12313.1459.1 ID=prot_S-dermatodea_contig12313.1459.1|Name=mRNA_S-dermatodea_contig12313.1459.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=228bp
MLEGRPDGGFHAYAPEVTVTHRVDLDALRRSDDVVARTYERPRGRALPKW
GEDGDGSVEDMPLSHQSPPAPASKWGSSGNGLGEPWECHACTFVNEDPAC
RTVCEMCSTRRPSGVFFASHEEGWGPTSTGAAVGREGSLMTPSSALSSAA
VRAAESGAVSGRNHPLDGVTVGSDDEAVDGILGGVSPGAGASPPFGRGVQ
TQRHGKGAASYDSDWEGFGRASFGDSP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036443Znf_RanBP2_sf