mRNA_S-dermatodea_contig12313.1459.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12313.1459.1
Unique NamemRNA_S-dermatodea_contig12313.1459.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12313.1459.1 vs. uniprot
Match: A0A6H5KBW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW0_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 1.740e-25
Identity = 100/301 (33.22%), Postives = 126/301 (41.86%), Query Frame = 3 
Query:    6 KVGRLIAGMLEGRPDGGFHAYAPEVTVTHRVDLDALRRSDDVVARTYERPRGRALPKWGEDGDGSVEDMPLSHQSPPAPASKWGSSGNGLG-EPWECHACTFVNEDPACRTVCEMCSTRRPSGVFFASHEEGWGPTSTGAAVGREGSLMT-----------------------------------------------PSSALSSAAVRAAESGAVSGRNHPLDGVTVGSDDEAVDGILGGVSPGAGASPPFGRGVQTQRHGKGAASYDS------------DWEGFGRASFG-DSP*NCSP 725
            KVG +I GMLE R DGG+  ++PE+    R    A +R   VVARTYERPRGR+LPKW    D +V   PL    PP PASK G  G+G   +PW C ACT++NEDPA R  CE+C+T RPS                                                                           P   + +        G       P+ G+ V  +D  VDGILGG+SPG GA P      Q +    G+A+  S            +W+GFG  SFG +SP  CSP
Sbjct:  811 KVGGVIVGMLERRVDGGYQIFSPEI---ERDSPIAAQRG--VVARTYERPRGRSLPKWDRSDD-AVSTRPLP-PPPPRPASKLGLVGSGFSHQPWNCPACTYLNEDPAFRAACEICNTPRPSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPPQIEACIPSGFSVGGGEAGGLPVGGIEV--EDNEVDGILGGISPGGGAFPVVSSTDQAESRHCGSATAASAAALGGSWEAGDEWQGFGSGSFGQESPVKCSP 1102
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BLAST of mRNA_S-dermatodea_contig12313.1459.1 vs. uniprot
Match: D7G1S7_ECTSI (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1S7_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.120e-22
Identity = 96/300 (32.00%), Postives = 119/300 (39.67%), Query Frame = 3 
Query:   30 MLEGRPDGGFHAYAPEVTVTHRVDLDALRRSDDVVARTYERPRGRALPKWGEDGDG-SVEDMPLSHQSPPAPASKWGSSGNGLGE-PWECHACTFVNEDPACRTVCEMCSTRRPSGVFFA-----------SHEEGWGPTSTGAAVGREGSL-------------------------------------------MTPSSALSSAAVRAAESGAVSGRNHPLDGVTVGSDDEAVDGILGGVSPGAGASPPFGRGVQTQRHGKGAASYDS------------DWEGFGRASFG-DSP*NCS 722
            MLE R DGG+  ++PE+    R    A +R   VVARTYERPRGR+LPKW    D  S    P        PASK G  G+G  + PW C ACT++NEDPA R  CE+C+T RPS    A              + W  +    + G                                                + P   + +        G       P     V  DD  VDGILGGVSPG GA P      Q      G+A+  S            +W+GFG  SFG +SP NCS
Sbjct:    1 MLERRVDGGYQIFSPEI---ERDSPIAAQRG--VVARTYERPRGRSLPKWDRTDDAVSTRPAPXXXXXXXRPASKLGLIGSGFSQQPWNCPACTYLNEDPAFRAACEICNTPRPSAAADAVGTGTSGDGGEQRHDDWDDSEVLKSCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPPPQIEACIPSGFSVGGGEAGGLPXXXXXV--DDNEVDGILGGVSPGGGAFPVVSGAYQAASGHCGSATAASAAALGGGWEAGDEWQGFGSGSFGQESPVNCS 293
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12313.1459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KBW0_9PHAE1.740e-2533.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1S7_ECTSI1.120e-2232.00RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12313contigS-dermatodea_contig12313:152..2821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1811
Cds size684
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12313.1459.1prot_S-dermatodea_contig12313.1459.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12313 181..1723 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924243.4756331-UTR-S-dermatodea_contig12313:151..1801622924243.4756331-UTR-S-dermatodea_contig12313:151..180Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12313 152..180 +
1694079119.8994594-UTR-S-dermatodea_contig12313:151..1801694079119.8994594-UTR-S-dermatodea_contig12313:151..180Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12313 152..180 +
1622924243.5138388-UTR-S-dermatodea_contig12313:1723..28211622924243.5138388-UTR-S-dermatodea_contig12313:1723..2821Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12313 1724..2821 +
1694079119.936381-UTR-S-dermatodea_contig12313:1723..28211694079119.936381-UTR-S-dermatodea_contig12313:1723..2821Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12313 1724..2821 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924243.4850988-CDS-S-dermatodea_contig12313:180..2281622924243.4850988-CDS-S-dermatodea_contig12313:180..228Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12313 181..228 +
1694079119.908028-CDS-S-dermatodea_contig12313:180..2281694079119.908028-CDS-S-dermatodea_contig12313:180..228Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12313 181..228 +
1622924243.4940474-CDS-S-dermatodea_contig12313:640..8441622924243.4940474-CDS-S-dermatodea_contig12313:640..844Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12313 641..844 +
1694079119.9184716-CDS-S-dermatodea_contig12313:640..8441694079119.9184716-CDS-S-dermatodea_contig12313:640..844Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12313 641..844 +
1622924243.505483-CDS-S-dermatodea_contig12313:1291..17231622924243.505483-CDS-S-dermatodea_contig12313:1291..1723Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12313 1292..1723 +
1694079119.9276028-CDS-S-dermatodea_contig12313:1291..17231694079119.9276028-CDS-S-dermatodea_contig12313:1291..1723Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12313 1292..1723 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12313.1459.1

>prot_S-dermatodea_contig12313.1459.1 ID=prot_S-dermatodea_contig12313.1459.1|Name=mRNA_S-dermatodea_contig12313.1459.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=228bp
MLEGRPDGGFHAYAPEVTVTHRVDLDALRRSDDVVARTYERPRGRALPKW
GEDGDGSVEDMPLSHQSPPAPASKWGSSGNGLGEPWECHACTFVNEDPAC
RTVCEMCSTRRPSGVFFASHEEGWGPTSTGAAVGREGSLMTPSSALSSAA
VRAAESGAVSGRNHPLDGVTVGSDDEAVDGILGGVSPGAGASPPFGRGVQ
TQRHGKGAASYDSDWEGFGRASFGDSP*
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mRNA from alignment at S-dermatodea_contig12313:152..2821+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12313.1459.1 ID=mRNA_S-dermatodea_contig12313.1459.1|Name=mRNA_S-dermatodea_contig12313.1459.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2670bp|location=Sequence derived from alignment at S-dermatodea_contig12313:152..2821+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGAACAAGGTCGGCAGATTGATCGCCGGGATGTTGGAGGGCCGGCCCGAC
GGTGGCTTTCACGCGTACGCGCCAGAGGTGCAGACAGTCGCGAAAACCCA
TAAAAGCTGTGACCGTTTGGAAGCCTCGCGCAAGCCCATATATATTTTTG
ACCATTTAGAAGCCTGGAAGAGGTGCCGTACGAAATAGCAGGCGTAGCAT
CTCTCCTCTCCCGCTACTGCTGTGCGCCCCACATATCGCTTGCCCTGTAC
TGATGGCAAGCACGTGGAGGTCAGTTTAGGGCTCCTGGTCAATCCGGGCC
AATAGATGGAGCCCAACTCGGGGAAGTTTCGAACGTTAAGGGCGATAAAA
CAGTCGAATGAAGGTGCCGCCCGCTGCGTAGAACAGAGCCTTGCAAAACT
CAACTCTTGCCTCCGCTTGCAAATATATTAGCTTGTCGATGAGTCGCTCG
ATCACGACCGTTCCGTACATGCATGCCCCCGCATCGCAGGTCACGGTCAC
CCACCGCGTTGACCTTGACGCCCTGCGACGATCCGACGATGTCGTGGCTC
GTACTTACGAACGCCCGCGTGGCCGAGCGCTGCCGAAGTGGGGTGAGGAC
GGCGACGGCTCTGTGGAGGACATGCCGCTGTCTCACCAGTCTCCCCCGGC
GCCAGCGTCCAAGTGGGGCTCTTCGGGGAACGGCCTAGGCGAGGTGCGGA
ACTCTTGACAAGGGGCCGTCCGTGTTTGTGCTGTGCAGACTGTGTGTCCA
GTGATGAGGGATGTATTATACATGATCAAGCCCAACTCCAATGTATGCCA
TTGCCGCCCGGTGTCAGCCCTGGGAGAGTTGACAAACGCCTCTAGGGCAC
GTTGCTTGGGCTGTGGGAGGCAGGGTTCCTCTGATAGTTTTCGTCGCCGA
AGACTAACGTCATTTTTTTCTTCGGCCGCATGGCCGCGTGTTGGCGGTTA
AGCTCGTACGCCATATAATACTACAATGCGCACCTCGTAGCTAGCTGCAG
CAGGGAGATATCTTAATCGCGAAACAACCGGAAAAATGTTGCCGAGCTTT
TGATCTGGCAAGCTATCTTAACCCCCTCCCCACCCGCCCCACACACACTC
CGATGCTCCTTCCCCTTGATGAAACGAAACGATGACACAGCCGTGGGAAT
GCCACGCCTGTACGTTCGTCAACGAGGACCCCGCGTGTCGCACGGTCTGC
GAGATGTGTAGCACACGCCGACCAAGCGGAGTCTTCTTCGCGAGCCATGA
GGAAGGCTGGGGACCGACAAGCACAGGAGCGGCCGTAGGACGGGAGGGGT
CCTTGATGACACCGAGCTCCGCCCTTTCTTCCGCCGCAGTCCGGGCTGCT
GAATCGGGCGCGGTCTCCGGGCGGAACCACCCTCTGGATGGTGTGACCGT
TGGCAGCGACGATGAAGCGGTAGACGGCATCCTTGGAGGCGTTTCTCCTG
GCGCGGGAGCTTCTCCGCCTTTTGGTCGGGGTGTCCAAACGCAGCGGCAC
GGCAAAGGCGCCGCTTCGTATGATTCCGATTGGGAAGGTTTCGGGAGGGC
GTCGTTTGGAGACTCTCCGTAAAACTGCTCGCCGGACGGGTCAGGGGGTG
AAGTTACTCACGTCTGCGGCCGATCGTGAGGCGGCGATCCTGACGATGAC
GTGCTCCTGCGGTCGTGGAGAACGGAAATATTGGCTCGGGGGTTTGTACG
TCTGCCGTTTCGTCGTTTGCGGTTTTGACAAAGGTAGTGTCACACAGCAT
AGACGAGATATCATGAGGCGGTTTGATAGAGATGGGTTGGGTAACATTCG
CGGGTAAACGGAGTGCTGTATGAAAGGTGTGCGCTGGTGCAGTTGCTTAG
GTCGGTGCACGTGTGTTCGGAGGTCGTGGTGGCGCATACGAGTGGTGCTC
TTTCCCGCGTTGACGGTTAATACGACCGCGATGAAGACTTTTGGCCCCTC
GATATCAGGGACTTGGGTGTTTCGACGACGCTCTCCAGCGGAGTCAGCCG
CGAGCTGTATGAGGTTTCGGCCACGATGCGATGCGCCCGATGGCATCCTG
CGCTGCGGTTCATGTTCGACTTGGAAGCAAAGGTTTATCTCAGTTTCTCC
TCAGGCAACCAGGGCAATACATCGGTACGCGACTGAAGCGAGGACTGCTT
GGGGCTGTACCACAGCCAGCCGTTGTCGTATTGGTTAGGGGTGTTGATGG
GAGCAGGGTCTGCTGTGTCTTGCTGGATTTGCTTTGGTCTGCGTTCGCCC
GTCCTCTGGGTTGACGTTTAGATTTTCTTCCTTAAGAGTGTGGAGAATGC
CGTGCGAGTGCAGGAAAAGAAAGTGGTTGGACACTCTCTCGAAGAGATTT
GGTGGACGGGCAATCATGGCAATTGGACACCAGGCCTACTGGTGCTTTCT
GGGACTTGACCGATGTCCGCCCGTGTTATTAGAATATACGCTGGGTTTCG
AAGCGCAGGTTCGTTTCCCCACCAAAATTGAAGTAAGATGTCTACGAAAT
ACGGCTAAGGTGGGCAACAAGATACGAAATAGTCACACTATAAACATCAG
CGATCGGCACCCTCACAAGACGAGAAACCAGAAGGATGCTGGAGAGCCTC
GGGATGAAGTAAGATACACAACCAACCAATTTCTACCACTCCGCAGCGTG
TGTTCGGGGGAACACGGTCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12313:152..2821+

>mRNA_S-dermatodea_contig12313.1459.1 ID=mRNA_S-dermatodea_contig12313.1459.1|Name=mRNA_S-dermatodea_contig12313.1459.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1368bp|location=Sequence derived from alignment at S-dermatodea_contig12313:152..2821+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTGGAGGGCCGGCCCGACGGTGGCTTTCACGCGTACGCGCCAGAGAT
GTTGGAGGGCCGGCCCGACGGTGGCTTTCACGCGTACGCGCCAGAGGTCA
CGGTCACCCACCGCGTTGACCTTGACGCCCTGCGACGATCCGACGATGTC
GTGGCTCGTACTTACGAACGCCCGCGTGGCCGAGCGCTGCCGAAGTGGGG
TGAGGACGGCGACGGCTCTGTGGAGGACATGCCGCTGTCTCACCAGTCTC
CCCCGGCGCCAGCGTCCAAGTGGGGCTCTTCGGGGAACGGCCTAGGCGAG
GTCACGGTCACCCACCGCGTTGACCTTGACGCCCTGCGACGATCCGACGA
TGTCGTGGCTCGTACTTACGAACGCCCGCGTGGCCGAGCGCTGCCGAAGT
GGGGTGAGGACGGCGACGGCTCTGTGGAGGACATGCCGCTGTCTCACCAG
TCTCCCCCGGCGCCAGCGTCCAAGTGGGGCTCTTCGGGGAACGGCCTAGG
CGAGCCGTGGGAATGCCACGCCTGTACGTTCGTCAACGAGGACCCCGCGT
GTCGCACGGTCTGCGAGATGTGTAGCACACGCCGACCAAGCGGAGTCTTC
TTCGCGAGCCATGAGGAAGGCTGGGGACCGACAAGCACAGGAGCGGCCGT
AGGACGGGAGGGGTCCTTGATGACACCGAGCTCCGCCCTTTCTTCCGCCG
CAGTCCGGGCTGCTGAATCGGGCGCGGTCTCCGGGCGGAACCACCCTCTG
GATGGTGTGACCGTTGGCAGCGACGATGAAGCGGTAGACGGCATCCTTGG
AGGCGTTTCTCCTGGCGCGGGAGCTTCTCCGCCTTTTGGTCGGGGTGTCC
AAACGCAGCGGCACGGCAAAGGCGCCGCTTCGTATGATTCCGATTGGGAA
GGTTTCGGGAGGGCGTCGTTTGGAGACTCTCCGTAACCGTGGGAATGCCA
CGCCTGTACGTTCGTCAACGAGGACCCCGCGTGTCGCACGGTCTGCGAGA
TGTGTAGCACACGCCGACCAAGCGGAGTCTTCTTCGCGAGCCATGAGGAA
GGCTGGGGACCGACAAGCACAGGAGCGGCCGTAGGACGGGAGGGGTCCTT
GATGACACCGAGCTCCGCCCTTTCTTCCGCCGCAGTCCGGGCTGCTGAAT
CGGGCGCGGTCTCCGGGCGGAACCACCCTCTGGATGGTGTGACCGTTGGC
AGCGACGATGAAGCGGTAGACGGCATCCTTGGAGGCGTTTCTCCTGGCGC
GGGAGCTTCTCCGCCTTTTGGTCGGGGTGTCCAAACGCAGCGGCACGGCA
AAGGCGCCGCTTCGTATGATTCCGATTGGGAAGGTTTCGGGAGGGCGTCG
TTTGGAGACTCTCCGTAA
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