mRNA_S-dermatodea_contig123.1447.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig123.1447.1
Unique NamemRNA_S-dermatodea_contig123.1447.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig123.1447.1 vs. uniprot
Match: D7FR97_ECTSI (Ribosome biogenesis protein NSA2 homolog n=3 Tax=PX clade TaxID=569578 RepID=D7FR97_ECTSI)

HSP 1 Score: 460 bits (1183), Expect = 3.320e-158
Identity = 235/239 (98.33%), Postives = 239/239 (100.00%), Query Frame = 1 
Query:    1 ERRRKKEAREVHKKSEFAQKVHGIRAKLYQRKRFKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVADDEMFKVLRSGKRKNKAWKRMVTKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVITKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 717
            E+RRKK+AREVHK+SEFAQKVHGIRAKLYQRKRFKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVADDEMFKVLRSGKRKNKAWKRMVTKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGV+TKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV
Sbjct:   22 EKRRKKDAREVHKRSEFAQKVHGIRAKLYQRKRFKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVADDEMFKVLRSGKRKNKAWKRMVTKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 260
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BLAST of mRNA_S-dermatodea_contig123.1447.1 vs. uniprot
Match: A0A7S2SRB9_9STRA (Ribosome biogenesis protein NSA2 homolog n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRB9_9STRA)

HSP 1 Score: 426 bits (1096), Expect = 5.090e-145
Identity = 218/239 (91.21%), Postives = 229/239 (95.82%), Query Frame = 1 
Query:    1 ERRRKKEAREVHKKSEFAQKVHGIRAKLYQRKRFKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVADDEMFKVLRSGKRKNKAWKRMVTKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVITKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 717
            ER RK++ARE HK+SEFAQKVHGIRAKLY +KRFKEKATMRKTI+MHQER NKHAND+AVP GAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKW+VPIPKVKPVADDEMFKVLRSGKRK KAWKRMVTKV FVGE FTRK PKYERFIRPTGLRFKKAHVTHPEL+ATFHLDI+GVKKNPSS LYTQLGVITKGTVIEVNVS+LGLVTQSGKVVWGKYAQVTN+PELDGCINAVLLV
Sbjct:   22 ERSRKRQAREAHKRSEFAQKVHGIRAKLYHQKRFKEKATMRKTISMHQERDNKHANDEAVPKGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWEVPIPKVKPVADDEMFKVLRSGKRKAKAWKRMVTKVCFVGENFTRKNPKYERFIRPTGLRFKKAHVTHPELQATFHLDIIGVKKNPSSSLYTQLGVITKGTVIEVNVSELGLVTQSGKVVWGKYAQVTNNPELDGCINAVLLV 260
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BLAST of mRNA_S-dermatodea_contig123.1447.1 vs. uniprot
Match: A0A7S2V588_9STRA (Ribosome biogenesis protein NSA2 homolog n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V588_9STRA)

HSP 1 Score: 423 bits (1088), Expect = 8.280e-144
Identity = 210/239 (87.87%), Postives = 230/239 (96.23%), Query Frame = 1 
Query:    1 ERRRKKEAREVHKKSEFAQKVHGIRAKLYQRKRFKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVADDEMFKVLRSGKRKNKAWKRMVTKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVITKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 717
            ER+RK+ ARE H++S+FAQKVHG+RAKLY ++RFKEKATM+KT+AMHQERTNKH N+DAVP GAVPAYLLDREGVSRAKVLSNT+KQKRKEKAGKWDVPIPKVKPVADDEMFK++R+GKR+ KAWKRMVTKVTFVG+ FTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHL ILGVKKNPSSP+YTQLGVITKGTVIEVNVS+LGLVT SGKVVWGKYAQVTN+PELDGCINAVLLV
Sbjct:   22 ERKRKRAAREAHRRSQFAQKVHGLRAKLYNKQRFKEKATMKKTLAMHQERTNKHGNEDAVPSGAVPAYLLDREGVSRAKVLSNTIKQKRKEKAGKWDVPIPKVKPVADDEMFKIMRTGKRRAKAWKRMVTKVTFVGDDFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLQILGVKKNPSSPMYTQLGVITKGTVIEVNVSELGLVTTSGKVVWGKYAQVTNNPELDGCINAVLLV 260
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BLAST of mRNA_S-dermatodea_contig123.1447.1 vs. uniprot
Match: W4GLP2_9STRA (Ribosome biogenesis protein NSA2 homolog n=6 Tax=Oomycota TaxID=4762 RepID=W4GLP2_9STRA)

HSP 1 Score: 414 bits (1065), Expect = 2.520e-140
Identity = 206/239 (86.19%), Postives = 224/239 (93.72%), Query Frame = 1 
Query:    1 ERRRKKEAREVHKKSEFAQKVHGIRAKLYQRKRFKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVADDEMFKVLRSGKRKNKAWKRMVTKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVITKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 717
            ER RKKEAREVH++S FAQKVHG+RAKLY +KRFKEKA M+KT+AMH ERTNKHANDD +PDGAVP+YLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKP+ADDEMFKVLRSGKR+NKAWKRM+TK TFVGE FTRK PKYERFIRP  +RFKKAHVTHPELK TF LDILGVKKNPSSPLYTQLGV+TKGT+IEVNVS+LGLVT +GKVVWGK+AQVTN+PE DGCINAVLLV
Sbjct:   22 ERARKKEAREVHRRSAFAQKVHGLRAKLYNQKRFKEKAAMKKTLAMHNERTNKHANDDNIPDGAVPSYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPIADDEMFKVLRSGKRRNKAWKRMITKATFVGENFTRKPPKYERFIRPAAMRFKKAHVTHPELKTTFQLDILGVKKNPSSPLYTQLGVMTKGTIIEVNVSELGLVTTTGKVVWGKFAQVTNNPENDGCINAVLLV 260
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BLAST of mRNA_S-dermatodea_contig123.1447.1 vs. uniprot
Match: A0A662Y3D7_9STRA (Ribosome biogenesis protein NSA2 homolog n=3 Tax=Oomycota TaxID=4762 RepID=A0A662Y3D7_9STRA)

HSP 1 Score: 415 bits (1067), Expect = 1.550e-139
Identity = 205/239 (85.77%), Postives = 225/239 (94.14%), Query Frame = 1 
Query:    1 ERRRKKEAREVHKKSEFAQKVHGIRAKLYQRKRFKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVADDEMFKVLRSGKRKNKAWKRMVTKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVITKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 717
            E++RKKEAREVH++S+FAQKVHG+RAKLY +KRFKEKA M+KT+A+H ERTNKHANDD +PDGAVP+YLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKP+ADDEMFKVLRSGKR+NKAWKRM+TK TFVGE FTRK PKYERFIRP+ +RFKKAHVTHPELK TF LDILGVKKNP SPLYTQLGV+TKGTVIEVNVS+LGLVT SGKVVWGKYAQ+TN PE DGCINAVLLV
Sbjct:   93 EKKRKKEAREVHRRSQFAQKVHGLRAKLYNQKRFKEKAAMKKTLALHNERTNKHANDDEIPDGAVPSYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPIADDEMFKVLRSGKRRNKAWKRMITKATFVGENFTRKPPKYERFIRPSAMRFKKAHVTHPELKTTFQLDILGVKKNPQSPLYTQLGVMTKGTVIEVNVSELGLVTTSGKVVWGKYAQITNVPENDGCINAVLLV 331
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BLAST of mRNA_S-dermatodea_contig123.1447.1 vs. uniprot
Match: A0A7S2DND8_9STRA (Ribosome biogenesis protein NSA2 homolog n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DND8_9STRA)

HSP 1 Score: 412 bits (1060), Expect = 2.050e-139
Identity = 211/239 (88.28%), Postives = 225/239 (94.14%), Query Frame = 1 
Query:    1 ERRRKKEAREVHKKSEFAQKVHGIRAKLYQRKRFKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVADDEMFKVLRSGKRKNKAWKRMVTKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVITKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 717
            ER RK++AREVHKKS+FAQ VHG+RAKLY +KRFKEKA MRKTIAMHQER NKH NDDA+P  A+PAYLLDREGVSRAKVLSNTVKQKRKEKAGKW+VPIPKVKPVAD+EMFKV+RSGKRK KAWKRMVTKVTFVG  FTRK PKYERFIRP+GLRFKKAHVTHPEL+ATFHLD+LGVKKNPSS LYTQLGVITKGTVIEVNVSDLGLVT SGKVVWGKYAQVTN+PELDGCINAVLLV
Sbjct:   32 ERARKRQAREVHKKSKFAQCVHGLRAKLYNQKRFKEKAVMRKTIAMHQERDNKHGNDDALPKDALPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWNVPIPKVKPVADEEMFKVMRSGKRKAKAWKRMVTKVTFVGPNFTRKNPKYERFIRPSGLRFKKAHVTHPELQATFHLDLLGVKKNPSSNLYTQLGVITKGTVIEVNVSDLGLVTTSGKVVWGKYAQVTNNPELDGCINAVLLV 270
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BLAST of mRNA_S-dermatodea_contig123.1447.1 vs. uniprot
Match: B8C4B1_THAPS (Ribosome biogenesis protein NSA2 homolog n=9 Tax=Bacillariophyta TaxID=2836 RepID=B8C4B1_THAPS)

HSP 1 Score: 402 bits (1034), Expect = 1.240e-135
Identity = 202/239 (84.52%), Postives = 221/239 (92.47%), Query Frame = 1 
Query:    1 ERRRKKEAREVHKKSEFAQKVHGIRAKLYQRKRFKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVADDEMFKVLRSGKRKNKAWKRMVTKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVITKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 717
            ER RK+EAR  HK+SEFAQKVHG+RAKLY ++RFKEKATMRKTIA H ER+NKHANDDAV DGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKW+VPIPKVKPVADDEMFKV+R+G +KNKAWKR+VTK TFVG+ FTRKAPKYERFIRPTGLR K+A+VTHPELK +F LDILGVKKNPSS LYT LGV+TKGT+IEVNVSDLGLVT SGKV WGK AQVTN+PELDGC+NAVLLV
Sbjct:   22 ERERKREARSAHKRSEFAQKVHGLRAKLYNQRRFKEKATMRKTIAQHNERSNKHANDDAVADGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWEVPIPKVKPVADDEMFKVMRTGSKKNKAWKRVVTKCTFVGDNFTRKAPKYERFIRPTGLRMKRANVTHPELKTSFQLDILGVKKNPSSSLYTNLGVLTKGTIIEVNVSDLGLVTTSGKVAWGKMAQVTNNPELDGCVNAVLLV 260
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BLAST of mRNA_S-dermatodea_contig123.1447.1 vs. uniprot
Match: W7THK2_9STRA (Ribosome biogenesis protein NSA2 homolog n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7THK2_9STRA)

HSP 1 Score: 402 bits (1034), Expect = 1.240e-135
Identity = 202/239 (84.52%), Postives = 224/239 (93.72%), Query Frame = 1 
Query:    1 ERRRKKEAREVHKKSEFAQKVHGIRAKLYQRKRFKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVADDEMFKVLRSGKRKNKAWKRMVTKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVITKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 717
            ER RKKEAREVH++S+FAQKVHG+RAKLY  KR+KEKA MRKT+AMHQE+TNK AN +  P+GAVPAYL+DREG+SRAKVLSN+VKQKR EKAGKW VP+PKVKPVADDEMFKV++SGKRK K+WKRMVTKVTFVGE FTRKAPK+ERFIRPTGLRFKKAHVTHP+L+ATF LDILGVKKNPSSP+YT LGVITKGTVIEVNVS+LGLVT SGKVVWGKYAQVTN+PELDGCINAVLLV
Sbjct:   22 ERLRKKEAREVHRRSKFAQKVHGLRAKLYNAKRYKEKAQMRKTLAMHQEKTNKRANQEGAPEGAVPAYLIDREGISRAKVLSNSVKQKRAEKAGKWSVPLPKVKPVADDEMFKVMQSGKRKAKSWKRMVTKVTFVGENFTRKAPKFERFIRPTGLRFKKAHVTHPDLQATFCLDILGVKKNPSSPMYTTLGVITKGTVIEVNVSELGLVTTSGKVVWGKYAQVTNNPELDGCINAVLLV 260
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BLAST of mRNA_S-dermatodea_contig123.1447.1 vs. uniprot
Match: F0WA33_9STRA (Ribosome biogenesis protein NSA2 homolog n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WA33_9STRA)

HSP 1 Score: 402 bits (1033), Expect = 1.750e-135
Identity = 197/239 (82.43%), Postives = 221/239 (92.47%), Query Frame = 1 
Query:    1 ERRRKKEAREVHKKSEFAQKVHGIRAKLYQRKRFKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVADDEMFKVLRSGKRKNKAWKRMVTKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVITKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 717
            ER RKKEARE H++S+FAQKVHG+RAKLY +KRFKEKA M+KT+AMHQERTNK  N+DA+PDGAVP+YLLDREGVS+AK+LSNTVKQKRKEKAGKW VPIPKVKP+ADDEMFKVLRSGKR+NK+WKRM+TK TFVGE FTRK PKYERFIRP+ +RFKKAHVTHPEL+ TF L I+GVKKNP SPLYTQLGV+TKGT+IEVNVS+LGLVT SGKVVWGKYAQ+TN PE DGCINAVLLV
Sbjct:   22 ERHRKKEAREAHRRSQFAQKVHGLRAKLYNQKRFKEKAAMKKTVAMHQERTNKQGNNDAIPDGAVPSYLLDREGVSKAKILSNTVKQKRKEKAGKWSVPIPKVKPIADDEMFKVLRSGKRRNKSWKRMITKATFVGENFTRKPPKYERFIRPSAMRFKKAHVTHPELQTTFQLAIIGVKKNPQSPLYTQLGVMTKGTIIEVNVSELGLVTTSGKVVWGKYAQITNVPENDGCINAVLLV 260
[Close]
BLAST of mRNA_S-dermatodea_contig123.1447.1 vs. uniprot
Match: A0A1Z5KRE4_FISSO (Ribosome biogenesis protein NSA2 homolog n=3 Tax=Bacillariophycidae TaxID=33850 RepID=A0A1Z5KRE4_FISSO)

HSP 1 Score: 395 bits (1014), Expect = 1.310e-132
Identity = 197/239 (82.43%), Postives = 220/239 (92.05%), Query Frame = 1 
Query:    1 ERRRKKEAREVHKKSEFAQKVHGIRAKLYQRKRFKEKATMRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKRKEKAGKWDVPIPKVKPVADDEMFKVLRSGKRKNKAWKRMVTKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVITKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 717
            E+ RKKEAR  HK+SEFAQKVHGIRAKLYQ++RFKEKAT+RKTIA H +R NKHA+DDAV +GAVPAYLLDR+GVSRAKVLSNT+KQKRKEKAGKW+VPIPKVKPVADDEMFK LR+GK++NKAWKRMVTK TFVG+ FTRK PKYERFIRP+GLR KKA+VTHPELK TF LDILGVKKNPSS LYT LGV+TKGT++EVNVS+LGLVT SGKV WGK AQVTN+PELDGC+NAVLLV
Sbjct:   22 EKERKKEARLAHKRSEFAQKVHGIRAKLYQKRRFKEKATLRKTIAQHNQRNNKHADDDAVAEGAVPAYLLDRQGVSRAKVLSNTIKQKRKEKAGKWEVPIPKVKPVADDEMFKTLRTGKKRNKAWKRMVTKCTFVGDSFTRKNPKYERFIRPSGLRMKKANVTHPELKTTFQLDILGVKKNPSSALYTNLGVLTKGTILEVNVSELGLVTTSGKVAWGKMAQVTNNPELDGCVNAVLLV 260
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig123.1447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR97_ECTSI3.320e-15898.33Ribosome biogenesis protein NSA2 homolog n=3 Tax=P... [more]
A0A7S2SRB9_9STRA5.090e-14591.21Ribosome biogenesis protein NSA2 homolog n=1 Tax=R... [more]
A0A7S2V588_9STRA8.280e-14487.87Ribosome biogenesis protein NSA2 homolog n=1 Tax=F... [more]
W4GLP2_9STRA2.520e-14086.19Ribosome biogenesis protein NSA2 homolog n=6 Tax=O... [more]
A0A662Y3D7_9STRA1.550e-13985.77Ribosome biogenesis protein NSA2 homolog n=3 Tax=O... [more]
A0A7S2DND8_9STRA2.050e-13988.28Ribosome biogenesis protein NSA2 homolog n=2 Tax=D... [more]
B8C4B1_THAPS1.240e-13584.52Ribosome biogenesis protein NSA2 homolog n=9 Tax=B... [more]
W7THK2_9STRA1.240e-13584.52Ribosome biogenesis protein NSA2 homolog n=2 Tax=M... [more]
F0WA33_9STRA1.750e-13582.43Ribosome biogenesis protein NSA2 homolog n=1 Tax=A... [more]
A0A1Z5KRE4_FISSO1.310e-13282.43Ribosome biogenesis protein NSA2 homolog n=3 Tax=B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig123contigS-dermatodea_contig123:37242..40683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score399.8
Seed ortholog evalue7.4e-109
Seed eggNOG ortholog2880.D7FR97
KEGG koko:K14842
GOsGO:0000460,GO:0000470,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904
EggNOG free text desc.maturation of LSU-rRNA
EggNOG OGsCOG2007@1,KOG3163@2759
Ec32 orthologEc-26_002350.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein S8e/ribosomal biogenesis NSA2
Ec32 orthologEc-26_002350.2
Exons5
Model size1618
Cds size603
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924242.5187278-UTR-S-dermatodea_contig123:37241..381391622924242.5187278-UTR-S-dermatodea_contig123:37241..38139Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig123 37242..38139 -
1694079119.185292-UTR-S-dermatodea_contig123:37241..381391694079119.185292-UTR-S-dermatodea_contig123:37241..38139Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig123 37242..38139 -
1622924242.583793-UTR-S-dermatodea_contig123:40566..406831622924242.583793-UTR-S-dermatodea_contig123:40566..40683Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig123 40567..40683 -
1694079119.2396255-UTR-S-dermatodea_contig123:40566..406831694079119.2396255-UTR-S-dermatodea_contig123:40566..40683Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig123 40567..40683 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924242.5344534-CDS-S-dermatodea_contig123:38139..382921622924242.5344534-CDS-S-dermatodea_contig123:38139..38292Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig123 38140..38292 -
1694079119.1951315-CDS-S-dermatodea_contig123:38139..382921694079119.1951315-CDS-S-dermatodea_contig123:38139..38292Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig123 38140..38292 -
1622924242.5463378-CDS-S-dermatodea_contig123:38862..390361622924242.5463378-CDS-S-dermatodea_contig123:38862..39036Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig123 38863..39036 -
1694079119.203137-CDS-S-dermatodea_contig123:38862..390361694079119.203137-CDS-S-dermatodea_contig123:38862..39036Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig123 38863..39036 -
1622924242.5559075-CDS-S-dermatodea_contig123:39316..394031622924242.5559075-CDS-S-dermatodea_contig123:39316..39403Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig123 39317..39403 -
1694079119.2109063-CDS-S-dermatodea_contig123:39316..394031694079119.2109063-CDS-S-dermatodea_contig123:39316..39403Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig123 39317..39403 -
1622924242.5646126-CDS-S-dermatodea_contig123:39940..401181622924242.5646126-CDS-S-dermatodea_contig123:39940..40118Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig123 39941..40118 -
1694079119.221215-CDS-S-dermatodea_contig123:39940..401181694079119.221215-CDS-S-dermatodea_contig123:39940..40118Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig123 39941..40118 -
1622924242.5740578-CDS-S-dermatodea_contig123:40555..405661622924242.5740578-CDS-S-dermatodea_contig123:40555..40566Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig123 40556..40566 -
1694079119.229179-CDS-S-dermatodea_contig123:40555..405661694079119.229179-CDS-S-dermatodea_contig123:40555..40566Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig123 40556..40566 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig123.1447.1prot_S-dermatodea_contig123.1447.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig123 38140..40566 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig123.1447.1

>prot_S-dermatodea_contig123.1447.1 ID=prot_S-dermatodea_contig123.1447.1|Name=mRNA_S-dermatodea_contig123.1447.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=201bp
MRKTIAMHQERTNKHANDDAVPDGAVPAYLLDREGVSRAKVLSNTVKQKR
KEKAGKWDVPIPKVKPVADDEMFKVLRSGKRKNKAWKRMVTKVTFVGEGF
TRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQ
LGVITKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV
*
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mRNA from alignment at S-dermatodea_contig123:37242..40683-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig123.1447.1 ID=mRNA_S-dermatodea_contig123.1447.1|Name=mRNA_S-dermatodea_contig123.1447.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3442bp|location=Sequence derived from alignment at S-dermatodea_contig123:37242..40683- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAACGCAGACGAAAAAAGGAGGCCAGGGAGGTTCACAAGAAATCGGAGTT
CGCTCAAAAGGTGCATGGAATCCGTGCTAAACTGTACCAGCGCAAGAGGT
TCAAGGAAAAGGCCACCATGCGCAAAACGTGAGTCTCAGCCTCCACTTTT
CTGTCTCCAATGTATTATCGGTTGACTAGTGTATTAACATAAATCCGTCG
TTCGTTTCGCTAGCGCTTGAGATCATGTGTGTGTTGTGCGTCGAAACGAG
TCACTACTGTACATAGCACCAATACCAGAGATGAGGTGAGCCTCGTGTTT
TTATTGCTACGACATACAGACTCGAGCGGTGCGTTTCGAACAACACCATC
GACAATCATGTGATGGGCAAGATCCCGCCCGATCTTCATGTAAAGCACAT
AACAACGTGTAGTGTATTGCATCGAAAGGCAAGGTGCGTTTAGAGTGCAA
CTTTGTGCGGTCTCGAACAGCCCCCCAGTGCCGTTGTTCTTGTATATACT
GTGAACATGCTCGTCTCGTGTTTCGCTAATTGTGTTGGTCGTCTCAATTT
TGATTATTTTAACAGGATCGCGATGCATCAGGAACGTACGAACAAGCATG
CGAACGACGATGCCGTACCAGATGGTGCTGTCCCAGCGTATTTGCTTGAT
CGCGAGGGTGTCAGTCGAGCGAAGGTTTTAAGCAACACGGTGAAGCAGAA
GCGGAAGGAAAAGGCCGGGAAGTGGGACGTCCCGATCCCCAAGGTGCGTG
CGTCGGCCATTCCCGGGAGTCAAGCAGGCTTGCGTACCTTCGAGTATGTA
CTTTGCGCGCGTTTTTAGATGCTCGTATTTTCTTTTCGGCAACAGCAAGT
ACCTCGGAGAGCCCTTGGTGTGTTTCGTTTCTTGGTCCCGCACGCTGGCT
CCGCCAGCGCCAAGGGGTTGCACACCGTGTTGAAAAATGAAATGAGCTTT
TTCTCATTTGAAAATGCTGCCAGATAACGTTGCTGTACTTGTACACTAAA
TCCGGCGTTCGTGTTCGCAGATTTTTTCGCCCCCTCAAACAATATTTGTG
AGAGATTCGCCGCGGTCATGACTAATATCCCAAAGTGAAAAATAAATAGA
GGGTTCCCCTGGTGGACTACGTTCTCCCTGCGAGGATCGTGTGATGTCCT
TCGATGGACCAGCAAGGGTATCAACCTCGACTGAGAGTGACGTTTGTATG
ATGTGATACACAGGTTGTGTGGTCCCCCCTGCACCCCTGAGACCTTGCCG
CGCACGTGTTGCTCCGTATGGCATGTACAGGTCAAGCCAGTGGCTGACGA
CGAAATGTTCAAGGTGCTGCGCAGCGGCAAGCGTAAGAACAAGGCGTGGA
AGCGCATGGTGACGAAGGTGCGAAAATAGCTTTCCGCATATATATATGCC
CCGGTCAGCGTGTGTACTTGATTATCAACGCGTACTAATGTAGGATGCGT
TATGCGATATTCCATGGTAGCCATGACCAGTACTTGCAGCAGTGGGATTA
TATGTTGGGATGGGGTGTTCATGTGCTTCACTTGCGTTCGCGCCTTCGCT
GCAAGGCCTTATATTCTTTTCAACACGGCTTTTCGAGCCCCTTAAAGGAA
AGCAGGCAATCATCCCATCCTCTGTGATATGACATATCGTTGTGCAGGTG
ACCTTCGTCGGCGAAGGATTTACACGGAAGGCCCCGAAGTACGAGCGATT
CATCCGCCCTACAGGGCTTCGATTCAAGAAGGCACACGTGACGCACCCCG
AACTAAAGGCCACCTTCCACCTCGACATTCTTGGGGTGAAGAAGAACCCG
AGCTCACCCCTGTACACTCAGGTATTTGGTGTTGCGTTTGTCGGAATGTG
TAAACGTGCAAACGCACTATTTATAACGTCTTCGATACCCACTATATTGG
CTCATGGGGCAATGACATCGCAAACATCAAGGCGGCGGTGACGCCTAGTA
ATGTTTTGTTTTGCGTAAATACATCGAGTATACGATTTCCTAGTGTATAC
TACCGTGCACACATTGCTCGGGAAAACCTAGATGTTCCAAACATTTTCCT
TGTTTTCCTGTGTACAGCCGCCCTCACGAGGAGCCTGGTCGTACGTTCAC
CCTCACGACACCGCCACGGGCGCATAGACGGGATAGCCCGCCTTTCATCT
ACCTGTGTGAATGACTGTCTTACGTATATTGAAGAAACTTTGGTGGTTGA
TTTATGCAAATCTAAGCACCGCCCAGGAAAGGTGCTCCTTTGGAGCAGTG
TTACCTCAGAAAGAAAGGGCATGTTGGATTGGCTTTAGAGATCACATCAT
ACGACACTTGCGATATCGCGACAACGGCAGTTTTCCGTCACTACTAACCG
CTTTGCTTTTCCATCGGAATCTCCCTATTGTTTCGCTGCAGCTGGGAGTG
ATCACCAAGGGGACCGTGATAGAGGTCAACGTGAGCGACCTTGGGCTTGT
GACCCAAAGTGGCAAGGTCGTGTGGGGTAAATATGCTCAAGTGACGAACT
CGCCGGAGCTTGACGGGTGCATAAACGCAGTCCTGCTTGTGTAGCGCTCT
CTCAAAACTTGGTGTTTCTACCTCTTTCTTGGCGTTGCTTGAGAGCCGTG
CACACGGTGCTCAACATTTTGGAGCGGTGCATGAGGCCAAGCCCTAGTGC
AGTCGTGTGCATCTGTGGATGGATTGTACAAAACCTTAGCACCCATCTAC
ACAAGTGGCTCGGCTGAAGGTCGCGTGGTGTCCGCTTGCAGTGGCTGGAA
ATTGAATGCATTTCATCGTGCGTTTTCCTCGGAGACATCTCGACACATAC
CATGCTTTGCCGAGCACGTGCGCACGAGCAAAGCGTAATGCGTGAGTGTT
CCGAGTCCTTTGTAGAATATGCGCCAAATATATTTGCGGCTACCAGACCC
CGGACCTTGGTCTCCGCAGAAAGGCAAGAATAATGCTGAATGGGAGTAAG
GGACGGGGTCCGGCCCGCTGCAGGCAGGAGGCGGCCGGCGCCATTTTTCA
ACCCAGATTGCGTTATTTATGTATATATGACAAGGAGGACATGAGCTGCA
GGCTGGACGATCATCCAGGGGCTACAATACGAGCACGCAAGCTCTTACTA
CTGAACATAGAGGTGTGTTGTGCGAAAAGGCAGCGAGGACAATTTGTTCT
TCTCACTACATGCGTATCCGGCGCTCGTGGATCACAACGATAAAATAGAT
GGAGTAGGTGAATTATGGATGACACTCCCACCCCCCTCCAGCTAGCTCCC
GGCAGTGCAGTTGTTTTCACAACATCGGGTGTATACATGCATCGCAGTGA
TCCAATGGCAAGTGTTACGTTTTTTATCAAAATGTTTTTCCAAAATTTCA
TTCTTTTCGAGAACTGTTCTCCACATGGTGTAATCCGGATCTCTTATGAT
GTGATGTCGGGATGTCGAAGAAGAAGCAAGGCACAAACAGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig123:37242..40683-

>mRNA_S-dermatodea_contig123.1447.1 ID=mRNA_S-dermatodea_contig123.1447.1|Name=mRNA_S-dermatodea_contig123.1447.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1206bp|location=Sequence derived from alignment at S-dermatodea_contig123:37242..40683- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGCAAAACATGCGCAAAACGATCGCGATGCATCAGGAACGTACGAAC
AAGCATGCGAACGACGATGCCGTACCAGATGGTGCTGTCCCAGCGTATTT
GCTTGATCGCGAGGGTGTCAGTCGAGCGAAGGTTTTAAGCAACACGGTGA
AGCAGAAGCGGAAGGAAAAGGCCGGGAAGTGGGACGTCCCGATCCCCAAG
GATCGCGATGCATCAGGAACGTACGAACAAGCATGCGAACGACGATGCCG
TACCAGATGGTGCTGTCCCAGCGTATTTGCTTGATCGCGAGGGTGTCAGT
CGAGCGAAGGTTTTAAGCAACACGGTGAAGCAGAAGCGGAAGGAAAAGGC
CGGGAAGTGGGACGTCCCGATCCCCAAGGTCAAGCCAGTGGCTGACGACG
AAATGTTCAAGGTGCTGCGCAGCGGCAAGCGTAAGAACAAGGCGTGGAAG
CGCATGGTGACGAAGGTCAAGCCAGTGGCTGACGACGAAATGTTCAAGGT
GCTGCGCAGCGGCAAGCGTAAGAACAAGGCGTGGAAGCGCATGGTGACGA
AGGTGACCTTCGTCGGCGAAGGATTTACACGGAAGGCCCCGAAGTACGAG
CGATTCATCCGCCCTACAGGGCTTCGATTCAAGAAGGCACACGTGACGCA
CCCCGAACTAAAGGCCACCTTCCACCTCGACATTCTTGGGGTGAAGAAGA
ACCCGAGCTCACCCCTGTACACTCAGGTGACCTTCGTCGGCGAAGGATTT
ACACGGAAGGCCCCGAAGTACGAGCGATTCATCCGCCCTACAGGGCTTCG
ATTCAAGAAGGCACACGTGACGCACCCCGAACTAAAGGCCACCTTCCACC
TCGACATTCTTGGGGTGAAGAAGAACCCGAGCTCACCCCTGTACACTCAG
CTGGGAGTGATCACCAAGGGGACCGTGATAGAGGTCAACGTGAGCGACCT
TGGGCTTGTGACCCAAAGTGGCAAGGTCGTGTGGGGTAAATATGCTCAAG
TGACGAACTCGCCGGAGCTTGACGGGTGCATAAACGCAGTCCTGCTTGTG
TAGCTGGGAGTGATCACCAAGGGGACCGTGATAGAGGTCAACGTGAGCGA
CCTTGGGCTTGTGACCCAAAGTGGCAAGGTCGTGTGGGGTAAATATGCTC
AAGTGACGAACTCGCCGGAGCTTGACGGGTGCATAAACGCAGTCCTGCTT
GTGTAG
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