mRNA_S-dermatodea_contig123.1442.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig123.1442.1
Unique NamemRNA_S-dermatodea_contig123.1442.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig123.1442.1 vs. uniprot
Match: D7FRA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRA1_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 6.080e-24
Identity = 68/149 (45.64%), Postives = 87/149 (58.39%), Query Frame = 1 
Query:   16 YPRTYASFLDCLQKIQNFDIDEESQVDEVHQPHFDESMRDDENRSWFRSSWGLAQGPDTAWDDRDDDSYGVSRYSAEESLIEEETQAL-TPYSQGDNTRLPISHPDHSLGAGLGSLSDTDNNLAEGDAEENTAVVTDSPAEGELPWTPK 459
            YPRTY  F   L +  + D DE S+     QPH   S+  D   SWFR +WG     D A +  DDD+Y + R S EE  +EE+++A  +  +  D TRLPISHPDHSLGAGLG  S+ D +  E  +E++ A   D   EGELPWTPK
Sbjct:  572 YPRTYGCFKKSLDEALDNDGDETSRGGASQQPH--RSLVADNGHSWFRPAWGDEL--DDASEYHDDDTYDLDRSSTEEVFVEEDSEASKSDAAITDTTRLPISHPDHSLGAGLGPPSERDGD--ERQSEDDPAGAADMDVEGELPWTPK 714
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig123.1442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRA1_ECTSI6.080e-2445.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig123contigS-dermatodea_contig123:4929..5956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue1.6e-21
Seed eggNOG ortholog2880.D7FRA1
KEGG koko:K20409
KEGG Pathwayko04150,map04150
EggNOG free text desc.positive regulation of TOR signaling
EggNOG OGsCOG2319@1,KOG0309@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons3
Model size470
Cds size468
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig123.1442.1prot_S-dermatodea_contig123.1442.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig123 4929..5954 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924241.9069512-CDS-S-dermatodea_contig123:4928..50861622924241.9069512-CDS-S-dermatodea_contig123:4928..5086Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig123 4929..5086 +
1694079118.747652-CDS-S-dermatodea_contig123:4928..50861694079118.747652-CDS-S-dermatodea_contig123:4928..5086Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig123 4929..5086 +
1622924241.917101-CDS-S-dermatodea_contig123:5341..54561622924241.917101-CDS-S-dermatodea_contig123:5341..5456Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig123 5342..5456 +
1694079118.7604485-CDS-S-dermatodea_contig123:5341..54561694079118.7604485-CDS-S-dermatodea_contig123:5341..5456Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig123 5342..5456 +
1622924241.9310458-CDS-S-dermatodea_contig123:5759..59541622924241.9310458-CDS-S-dermatodea_contig123:5759..5954Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig123 5760..5954 +
1694079118.770341-CDS-S-dermatodea_contig123:5759..59541694079118.770341-CDS-S-dermatodea_contig123:5759..5954Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig123 5760..5954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig123.1442.1

>prot_S-dermatodea_contig123.1442.1 ID=prot_S-dermatodea_contig123.1442.1|Name=mRNA_S-dermatodea_contig123.1442.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=156bp
QASAGYPRTYASFLDCLQKIQNFDIDEESQVDEVHQPHFDESMRDDENRS
WFRSSWGLAQGPDTAWDDRDDDSYGVSRYSAEESLIEEETQALTPYSQGD
NTRLPISHPDHSLGAGLGSLSDTDNNLAEGDAEENTAVVTDSPAEGELPW
TPKPKQ
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mRNA from alignment at S-dermatodea_contig123:4929..5956+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig123.1442.1 ID=mRNA_S-dermatodea_contig123.1442.1|Name=mRNA_S-dermatodea_contig123.1442.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1028bp|location=Sequence derived from alignment at S-dermatodea_contig123:4929..5956+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGCATCGGCTGGGTATCCTCGAACGTACGCCAGCTTCTTGGATTGCTT
GCAGAAGATCCAAAATTTTGACATCGACGAGGAGAGCCAGGTCGACGAGG
TGCACCAGCCACACTTTGACGAGTCCATGCGCGATGACGAGAATCGAAGC
TGGTTCAGGTATGTGTGCATGTATGATACGGAATTGAATTTCCTTGGTCG
CACAGCAACTTATTCGTGCCACCTGTCTCCCTCTCCCCTTTGTTTGAACC
AGCTGCTGCCTTACTTCAACGGCTGTTTTTTCTCACCGTAACCTAATGAA
GCTATTCTACATGCAGCAACAGCACGGTATCGGCCGTGTACAAGCGAGCT
CCTCTCTGCCTGCGATTCAGCGCAGCAGTGTGCATCAACCCCCTATTCCC
GGCCAACCGCTAGGTCATCGTGGGGATTAGCTCAAGGGCCGGATACCGCG
TGGGACGACCGAGATGACGACAGCTACGGCGTTAGCAGATACAGCGCGGA
AGAGTCCTTGATAGAAGAGGAAACCCAGGTGCACGGGGGATGCGTCTTGG
TATCTAAGCGGCCAGGTTGGTTTTCAGCGCTGTTACCAACGGACGCCACC
GTGACGGGGTCTACCGCAGTTCTTGTAATTCTGCAACACTCCGGCACATA
AGACCCCGTTGCCCCGTCTCGCGAGATATCTAGATACATACTTTTTCCAA
GGCACCTGCATCGCGCGTCTGGTTGCTGCCCTGGGGCCTACAACCGAACA
AGGCTCCTTTGCTCGATGCTGCCGACTGCGACACGCTTAACACACCGAAG
CTCGAATTCTCCTCTTACTGTTTTTTAATAGGCTCTCACGCCATACTCGC
AGGGTGACAACACGCGGTTGCCCATCAGTCACCCGGACCACAGCCTTGGG
GCGGGCTTGGGCTCTCTCTCTGACACGGACAACAATCTCGCGGAGGGCGA
CGCCGAAGAGAACACCGCGGTCGTAACGGACTCCCCCGCTGAAGGAGAGT
TGCCTTGGACTCCGAAGCCAAAGCAGGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig123:4929..5956+

>mRNA_S-dermatodea_contig123.1442.1 ID=mRNA_S-dermatodea_contig123.1442.1|Name=mRNA_S-dermatodea_contig123.1442.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at S-dermatodea_contig123:4929..5956+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGCATCGGCTGGGTATCCTCGAACGTACGCCAGCTTCTTGGATTGCTT
GCAGAAGATCCAAAATTTTGACATCGACGAGGAGAGCCAGGTCGACGAGG
TGCACCAGCCACACTTTGACGAGTCCATGCGCGATGACGAGAATCGAAGC
TGGTTCAGCAGGCATCGGCTGGGTATCCTCGAACGTACGCCAGCTTCTTG
GATTGCTTGCAGAAGATCCAAAATTTTGACATCGACGAGGAGAGCCAGGT
CGACGAGGTGCACCAGCCACACTTTGACGAGTCCATGCGCGATGACGAGA
ATCGAAGCTGGTTCAGGTCATCGTGGGGATTAGCTCAAGGGCCGGATACC
GCGTGGGACGACCGAGATGACGACAGCTACGGCGTTAGCAGATACAGCGC
GGAAGAGTCCTTGATAGAAGAGGAAACCCAGGTCATCGTGGGGATTAGCT
CAAGGGCCGGATACCGCGTGGGACGACCGAGATGACGACAGCTACGGCGT
TAGCAGATACAGCGCGGAAGAGTCCTTGATAGAAGAGGAAACCCAGGCTC
TCACGCCATACTCGCAGGGTGACAACACGCGGTTGCCCATCAGTCACCCG
GACCACAGCCTTGGGGCGGGCTTGGGCTCTCTCTCTGACACGGACAACAA
TCTCGCGGAGGGCGACGCCGAAGAGAACACCGCGGTCGTAACGGACTCCC
CCGCTGAAGGAGAGTTGCCTTGGACTCCGAAGCCAAAGCAGGCTCTCACG
CCATACTCGCAGGGTGACAACACGCGGTTGCCCATCAGTCACCCGGACCA
CAGCCTTGGGGCGGGCTTGGGCTCTCTCTCTGACACGGACAACAATCTCG
CGGAGGGCGACGCCGAAGAGAACACCGCGGTCGTAACGGACTCCCCCGCT
GAAGGAGAGTTGCCTTGGACTCCGAAGCCAAAGCAG
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