mRNA_S-dermatodea_contig123.1441.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig123.1441.1
Unique NamemRNA_S-dermatodea_contig123.1441.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig123.1441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig123contigS-dermatodea_contig123:3319..4515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue2.4e-09
Seed eggNOG ortholog2880.D7FRA1
KEGG koko:K20409
KEGG Pathwayko04150,map04150
EggNOG free text desc.positive regulation of TOR signaling
EggNOG OGsCOG2319@1,KOG0309@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons4
Model size373
Cds size372
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig123.1441.1prot_S-dermatodea_contig123.1441.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig123 3319..4515 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924241.8400755-CDS-S-dermatodea_contig123:3318..34051622924241.8400755-CDS-S-dermatodea_contig123:3318..3405Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig123 3319..3405 +
1694079118.6981516-CDS-S-dermatodea_contig123:3318..34051694079118.6981516-CDS-S-dermatodea_contig123:3318..3405Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig123 3319..3405 +
1622924241.8552315-CDS-S-dermatodea_contig123:3638..37841622924241.8552315-CDS-S-dermatodea_contig123:3638..3784Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig123 3639..3784 +
1694079118.715103-CDS-S-dermatodea_contig123:3638..37841694079118.715103-CDS-S-dermatodea_contig123:3638..3784Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig123 3639..3784 +
1622924241.8637483-CDS-S-dermatodea_contig123:4146..42221622924241.8637483-CDS-S-dermatodea_contig123:4146..4222Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig123 4147..4222 +
1694079118.725148-CDS-S-dermatodea_contig123:4146..42221694079118.725148-CDS-S-dermatodea_contig123:4146..4222Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig123 4147..4222 +
1622924241.8722277-CDS-S-dermatodea_contig123:4452..45151622924241.8722277-CDS-S-dermatodea_contig123:4452..4515Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig123 4453..4515 +
1694079118.7361462-CDS-S-dermatodea_contig123:4452..45151694079118.7361462-CDS-S-dermatodea_contig123:4452..4515Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig123 4453..4515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig123.1441.1

>prot_S-dermatodea_contig123.1441.1 ID=prot_S-dermatodea_contig123.1441.1|Name=mRNA_S-dermatodea_contig123.1441.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=124bp
RARDELAAVQLESKGGSVRVDPHHAGVMPPTLVALDEGTVKRLQVAAEDA
MRRALKLRKPRLEACLLKLRRELTERVRNVANQAAGLVPRRDELHVDQHA
GLQFNLDEPRPAPSDYPSGGKVDE
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mRNA from alignment at S-dermatodea_contig123:3319..4515+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig123.1441.1 ID=mRNA_S-dermatodea_contig123.1441.1|Name=mRNA_S-dermatodea_contig123.1441.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1197bp|location=Sequence derived from alignment at S-dermatodea_contig123:3319..4515+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGTGCGAGAGACGAGCTTGCGGCAGTCCAGCTGGAGTCGAAGGGGGGATC
TGTCCGCGTTGATCCGCACCATGCGGGCGTGATGCCGGTGAGTGTTGTAG
TGTGTTTTGCTGCATAACCCAGAAAGGGGTGCTCGCCTGCTGTGAGTTCG
CATTTGACGGTTGGTTGGAGGTCGCAGTACATCTACCCTTGTGCATCCTG
AGCTTGGTTTGTCATTCGACGGCAGGAATTCGAACGGCGGTTAGGAGGTC
CGAAAGGTCCCCTCAATCATGCCCTTTCCCTCTGATATCTCGAAATTTTA
TTTCGTTGCCGGTCGCGCAGCCTACACTCGTCGCGCTGGATGAAGGAACA
GTGAAGCGACTGCAAGTCGCCGCAGAAGATGCCATGCGCCGAGCGCTAAA
GCTACGGAAACCCCGCTTGGAGGCTTGCCTCTTGAAGCTCCGGCGCGAAC
TTACCGAGCGTGTCAGGTGTGCCGTCGTTAGCACAGCGCGCATACGTGCG
TCTGAACCCGAGTGGCTTACCGCGTGCCAACAAGGCCATCAACTGGATGT
AGGACACAGTAGCAAGGCAGGGGAAGAGGCGTTGGTTTAGAGGTCGCGAG
TTGCGTCGACGCTGTGGTGCACTGTCGGGGCAGGTGCACTGTCGGGGCTA
TTTTCTAAGCGAATCGACATTGCAAGGCGAACGGCGGTATGGGACTCTTT
TGAACTCTCGTTGTTTAGTTGCAATGCTGTCGGACACATACTTTACAGTG
CTCGTTAGATTATGTTTGGTAGGCTGACCTTGGCGACGTACGGCGACCCT
AACTCTGCTCGCTCTCGGCTTTATCCAGGAATGTCGCCAACCAAGCGGCG
GGTTTGGTCCCACGCAGAGACGAGCTTCACGTCGACCAGCACGCGGGATT
GCAGGTGAAAACGTTTGTCGATATTTGGGATCGCATGAGATTGGTGCATC
TACGTCATTTTCCCCGAGTTGCGTCTCCACCGGACATTTTCCCGTATCGA
GACCATCACCTTCGCACACGGGTAACTTTTGGCTATTTCCCGCTCATCAC
CAGCGCGGCTGTCGGTATGCAAGACCGTGTATATGAAGTGCTTCAGCCCT
AGGGCTCCCCACTTCTGCTCTCTTGCTTGCACAGTTCAACCTAGACGAAC
CAAGACCTGCGCCGTCGGACTACCCTTCTGGAGGCAAGGTCGACGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig123:3319..4515+

>mRNA_S-dermatodea_contig123.1441.1 ID=mRNA_S-dermatodea_contig123.1441.1|Name=mRNA_S-dermatodea_contig123.1441.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at S-dermatodea_contig123:3319..4515+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGTGCGAGAGACGAGCTTGCGGCAGTCCAGCTGGAGTCGAAGGGGGGATC
TGTCCGCGTTGATCCGCACCATGCGGGCGTGATGCCGCGTGCGAGAGACG
AGCTTGCGGCAGTCCAGCTGGAGTCGAAGGGGGGATCTGTCCGCGTTGAT
CCGCACCATGCGGGCGTGATGCCGCCTACACTCGTCGCGCTGGATGAAGG
AACAGTGAAGCGACTGCAAGTCGCCGCAGAAGATGCCATGCGCCGAGCGC
TAAAGCTACGGAAACCCCGCTTGGAGGCTTGCCTCTTGAAGCTCCGGCGC
GAACTTACCGAGCGTGTCAGCCTACACTCGTCGCGCTGGATGAAGGAACA
GTGAAGCGACTGCAAGTCGCCGCAGAAGATGCCATGCGCCGAGCGCTAAA
GCTACGGAAACCCCGCTTGGAGGCTTGCCTCTTGAAGCTCCGGCGCGAAC
TTACCGAGCGTGTCAGGAATGTCGCCAACCAAGCGGCGGGTTTGGTCCCA
CGCAGAGACGAGCTTCACGTCGACCAGCACGCGGGATTGCAGGAATGTCG
CCAACCAAGCGGCGGGTTTGGTCCCACGCAGAGACGAGCTTCACGTCGAC
CAGCACGCGGGATTGCAGTTCAACCTAGACGAACCAAGACCTGCGCCGTC
GGACTACCCTTCTGGAGGCAAGGTCGACGAGTTCAACCTAGACGAACCAA
GACCTGCGCCGTCGGACTACCCTTCTGGAGGCAAGGTCGACGAG
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