mRNA_S-dermatodea_contig12266.1423.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12266.1423.1
Unique NamemRNA_S-dermatodea_contig12266.1423.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12266.1423.1 vs. uniprot
Match: D8LQ19_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ19_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 1.500e-38
Identity = 122/308 (39.61%), Postives = 149/308 (48.38%), Query Frame = 3 
Query:   99 MREFERGSAENTRKALLENDAHL-CHPPKRPWATELGGAGTAIGDG--DSGEGEATGRGPPLRFVPGDPFAVEEADTGAWARHFTYLSVVPS--------------GSFSSPLTRQPPS-PPPSSSSCRADKTGSG--SIDQSAARHLPKASNGTAREERXXXXXXSADVVLASHGVYEEFLAYDCRPPEDSNSSSSVAENENAGAGKEGVRLE---------TGFLDPIERS--QAAATSR----------------------RLGTPQRALREDIIDRLFDELWRRLSPDLLLL------AAGEKG 845
            MREFER SAENTR+ALL+NDA L C PP          AG+A  DG   S          PLR+VPGDPFA EEAD GAWA+HFTYLSVVP+               +    L R P + PPP       D+   G  +++ S  + L           R        + V ASHGVYEE+LAYDCRPP   + +S   E    G G+E  RL          TG +     +  Q A  S                       RL TPQR LR++I+DRLFDELW R++PDLLL+      AAG +G
Sbjct:   57 MREFERSSAENTREALLDNDALLLCEPPASA------NAGSADNDGRQTSPLSPXXXXXVPLRYVPGDPFANEEADVGAWAKHFTYLSVVPTERGEGGDAEKRSNDNAGGGLLERGPVAEPPPVRDVMETDEETGGVAAVEGSRIQDLTPEEAAAELAGRRLEEMPQGEEVFASHGVYEEYLAYDCRPPGFDDVTSPGGET--MGPGEEDPRLAAKGSGAWAVTGVVPNANSAVGQGAWVSNNAASEPPALGASTTGGSHRVVARLDTPQRELRQEIMDRLFDELWERITPDLLLVLRQQQAAAGGRG 356
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12266.1423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ19_ECTSI1.500e-3839.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12266contigS-dermatodea_contig12266:2527..3545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size870
Cds size459
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12266.1423.1prot_S-dermatodea_contig12266.1423.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12266 2527..2985 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924240.5862172-CDS-S-dermatodea_contig12266:2526..29851622924240.5862172-CDS-S-dermatodea_contig12266:2526..2985Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12266 2527..2985 +
1694079117.8373075-CDS-S-dermatodea_contig12266:2526..29851694079117.8373075-CDS-S-dermatodea_contig12266:2526..2985Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12266 2527..2985 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924240.5985157-UTR-S-dermatodea_contig12266:2985..30201622924240.5985157-UTR-S-dermatodea_contig12266:2985..3020Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12266 2986..3020 +
1694079117.846478-UTR-S-dermatodea_contig12266:2985..30201694079117.846478-UTR-S-dermatodea_contig12266:2985..3020Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12266 2986..3020 +
1622924240.6081612-UTR-S-dermatodea_contig12266:3170..35451622924240.6081612-UTR-S-dermatodea_contig12266:3170..3545Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12266 3171..3545 +
1694079117.8577533-UTR-S-dermatodea_contig12266:3170..35451694079117.8577533-UTR-S-dermatodea_contig12266:3170..3545Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12266 3171..3545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12266.1423.1

>prot_S-dermatodea_contig12266.1423.1 ID=prot_S-dermatodea_contig12266.1423.1|Name=mRNA_S-dermatodea_contig12266.1423.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=153bp
RQRAAAAAGGTPAATKEAVQERDGGRYAAAAVACASSSGDQQRTREKLCL
KTTPTSATPPSGLGRRSSGGPVPPSATATAARVKQRGGGLRCGSSPATLS
PSKRRIPAPGLGTSPISRWFLRGAFRAHSRDSRRRLRRRRRRAERTKQGA
GR*
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mRNA from alignment at S-dermatodea_contig12266:2527..3545+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12266.1423.1 ID=mRNA_S-dermatodea_contig12266.1423.1|Name=mRNA_S-dermatodea_contig12266.1423.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1019bp|location=Sequence derived from alignment at S-dermatodea_contig12266:2527..3545+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGCAGCGGGCGGCGGCGGCGGCGGGTGGGACACCAGCAGCGACGAAGGA
GGCGGTGCAGGAACGGGATGGGGGGCGGTATGCGGCGGCGGCGGTGGCAT
GCGCGAGTTCGAGCGGGGATCAGCAGAGAACACGAGAAAAGCTCTGCTTG
AAAACGACGCCCACCTCTGCCACCCCCCCAAGCGGCCTTGGGCGACGGAG
CTCGGGGGGGCCGGTACCGCCATCGGCGACGGCGACAGCGGCGAGGGTGA
AGCAACGGGGAGGGGGCCTCCGTTGCGGTTCGTCCCCGGCGACCCTTTCG
CCGTCGAAGAGGCGGATACCGGCGCCTGGGCTAGGCACTTCACCTATCTC
TCGGTGGTTCCTTCGGGGAGCTTTTCGAGCCCACTCACGCGACAGCCGCC
GTCGCCTCCGCCGTCGTCGTCGTCGTGCCGAGCGGACAAAACAGGGAGCG
GGTCGATAGACCAGAGCGCGGCTCGCCATCTACCAAAGGCATCGGTACCG
GCGGCGACGTTGTCGCGGCACGAGCTAGCGGCTTCGCTCTCGGCCTCTCC
GGCTGCGGATAACCCGAAAGCCAGAAACGGCGTCAACGCGCTCCCCCCCA
CGCACGGCGCCGAACCTTCTTCCTCTTCTCCTTGTGGCTTCGAGAACGGA
ACCGCGCGCGAGGAACGACAAGAGGAGGAGGAGGAGAGCGCCGATGTGGT
TCTCGCGAGCCACGGGGTCTATGAAGAGTTCCTGGCGTACGACTGCCGGC
CTCCCGAGGACAGCAACAGCAGCAGCAGCGTGGCAGAAAACGAAAACGCG
GGAGCGGGGAAGGAGGGCGTTAGGTTAGAGACCGGCTTCTTGGATCCGAT
CGAGCGGAGCCAGGCAGCCGCGACGTCGCGGCGGCTCGGCACGCCGCAGC
GCGCGCTGAGGGAAGATATTATAGACCGGCTGTTTGACGAGCTGTGGCGA
CGCCTTTCGCCGGACCTGCTGCTGTTGGCGGCGGGGGAGAAGGGGGGGGG
CGGGAGCGGGAGCGCGGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12266:2527..3545+

>mRNA_S-dermatodea_contig12266.1423.1 ID=mRNA_S-dermatodea_contig12266.1423.1|Name=mRNA_S-dermatodea_contig12266.1423.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at S-dermatodea_contig12266:2527..3545+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGCAGCGGGCGGCGGCGGCGGCGGGTGGGACACCAGCAGCGACGAAGGA
GGCGGTGCAGGAACGGGATGGGGGGCGGTATGCGGCGGCGGCGGTGGCAT
GCGCGAGTTCGAGCGGGGATCAGCAGAGAACACGAGAAAAGCTCTGCTTG
AAAACGACGCCCACCTCTGCCACCCCCCCAAGCGGCCTTGGGCGACGGAG
CTCGGGGGGGCCGGTACCGCCATCGGCGACGGCGACAGCGGCGAGGGTGA
AGCAACGGGGAGGGGGCCTCCGTTGCGGTTCGTCCCCGGCGACCCTTTCG
CCGTCGAAGAGGCGGATACCGGCGCCTGGGCTAGGCACTTCACCTATCTC
TCGGTGGTTCCTTCGGGGAGCTTTTCGAGCCCACTCACGCGACAGCCGCC
GTCGCCTCCGCCGTCGTCGTCGTCGTGCCGAGCGGACAAAACAGGGAGCG
GGTCGATAGCGGCAGCGGGCGGCGGCGGCGGCGGGTGGGACACCAGCAGC
GACGAAGGAGGCGGTGCAGGAACGGGATGGGGGGCGGTATGCGGCGGCGG
CGGTGGCATGCGCGAGTTCGAGCGGGGATCAGCAGAGAACACGAGAAAAG
CTCTGCTTGAAAACGACGCCCACCTCTGCCACCCCCCCAAGCGGCCTTGG
GCGACGGAGCTCGGGGGGGCCGGTACCGCCATCGGCGACGGCGACAGCGG
CGAGGGTGAAGCAACGGGGAGGGGGCCTCCGTTGCGGTTCGTCCCCGGCG
ACCCTTTCGCCGTCGAAGAGGCGGATACCGGCGCCTGGGCTAGGCACTTC
ACCTATCTCTCGGTGGTTCCTTCGGGGAGCTTTTCGAGCCCACTCACGCG
ACAGCCGCCGTCGCCTCCGCCGTCGTCGTCGTCGTGCCGAGCGGACAAAA
CAGGGAGCGGGTCGATAG
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