mRNA_S-dermatodea_contig12262.1421.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12262.1421.1
Unique NamemRNA_S-dermatodea_contig12262.1421.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig12262.1421.1 vs. uniprot
Match: D8LLJ0_ECTSI (START domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLJ0_ECTSI)

HSP 1 Score: 423 bits (1088), Expect = 1.000e-136
Identity = 305/594 (51.35%), Postives = 339/594 (57.07%), Query Frame = 1 
Query:    1 HTAQEDAQGVFPPGQPVGEGGRGFMLGERVAILAATLLFFKWFPRQGACLAAAAXXXXXATAQPRSQQRNWHTRHRLEAPTARPPTFTLIVASGRPPRAEDFASHLPHSGRFGPQHKSGPKVAAAAFVGEA--GGVEESWSTALAALAASATALAHETRPCHDQQEQRQNQPQGKDHRXXXXXXXXXXXXXXXXARSPAFPLLQRLQEDLSSNLHALSGWNSERRDRLQRRRAAAPEWAAHLSGLTAGAGRLAGGAF-------SAAVVSGG--------SELRKIRVR-VTRYALRNA----ALDGAADGAEEPEGEYEGSRLARL---TDMTVQNVVDVVARDGWEHVATTSGVVVHRQYIALGPDGTPAPPGGP-----ASGADSGTAXXXXXXXXXXXXXXXXXXXXGGGGVCGADAAPQFACVKATAILAVPPEVVYLLFADNSRVGEYNEHCREVKDLEILSPDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPVEHPLAPRSSRYVRSEILLAGNFMRPVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCASSPVNFIRRLESAAVKLMHELQE 1692
            HT   D QG +  G+         ML ERVAILAATLL  K     G    A           P  QQ   H  H                    PPRA+DF S  P +GRF   HK G  V      GE   G   E W   +AA+ AS + LA +     D+Q+    +  G+  R    XXXXXXXXXXXX    + P  +R++ +LS+NL A   W   RR   +   AAA     HL+ LTA    L G  F       SAA  SG         +EL + R R +    LR       L G     +  EGE E  ++  L   TD  VQNVVDVVARDGWE V    GVVVHRQY+ALGPDGTP           A+G     A                      G   G    PQFACVKA+AIL+VPPEVVYLLFADNSRVGEYNEHCREVKDLE+LS DSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVS+PVEHP APR+SRYVRSEILLAGNFMRPVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLC SSPV FIRRLE AA KLM ELQ+
Sbjct:   14 HTGVRDTQGTWARGREA----ENLMLRERVAILAATLLLLKCHSMSGGATGAL----------PDQQQHRRHVPH----------------YGCTPPRAQDFGSRYPQTGRFEAWHKRG-LVLDDEPAGEEWEGADRECWGATIAAIVASGSTLALQRTLKPDEQQSASAEGYGRQPRHYRRXXXXXXXXXXXXXXXXSAPRFRRMRAELSANLDA---WRMRRRRARETTPAAAIVIRQHLTQLTAQLSELTGEGFRRAERLLSAAKASGNVGIRIAGCAELLRRRGRELFLLGLRKKQNPDGLGGEGKLGKGKEGEAERRKMRELQLLTDKIVQNVVDVVARDGWEVVVEREGVVVHRQYLALGPDGTPEAXXXXXXXXQAAGVPKAEASSAFVGGRVEGSADDSVPV---GDDSGKSKPPQFACVKASAILSVPPEVVYLLFADNSRVGEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSKPVEHPAAPRTSRYVRSEILLAGNFMRPVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCTSSPVTFIRRLEVAAKKLMLELQQ 570
[Close]
BLAST of mRNA_S-dermatodea_contig12262.1421.1 vs. uniprot
Match: A0A6H5J623_9PHAE (START domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J623_9PHAE)

HSP 1 Score: 422 bits (1084), Expect = 1.670e-135
Identity = 306/591 (51.78%), Postives = 343/591 (58.04%), Query Frame = 1 
Query:   73 MLGERVAILAATLLFFKWFPRQGACLAAAAXXXXXATAQPRSQQRNWHTRHRLEAPTARPPTFTLIVASGRPPRAEDFASHLPHSGRFGPQHKSGPKVAAAAFVGEAGGVE------ESWSTALAALAASATALAHETRPCHDQQEQRQNQPQGKDHRXXXXXXXXXXXXXXXXARSPAFPLLQRLQEDLSSNLHALSGWNSERRDRLQRRRAAAPEWAAHLSGLTAGAGRLAGGAF-------SAAVVSGG--------SELRKIRVR-VTRYALRNAALDGAADGAE---EPEGEYEGSRLARL---TDMTVQNVVDVVARDGWEHVATTSGVVVHRQYIALGPDGTPAPPGGPASGADSGTAXXXXXXXXXXXXXXXXXXXXGG--GGVCGADAAPQFACVKATAILAVPPEVVYLLFADNSRVGEYNEHCREVKDLEILSPDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPVEHPLAPRSSRYVRSEILLAGNFMRPVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCASSPVNFIRRLESAAVKLMHELQESA-HAHDAAATGVKAAGREDK 1752
            ML ERVAILAATLL  +     G    A           P  QQ   H  H                    P RA+DF S  P +GRF  QHK G  V       +  G E      E WS  +AA+ AS + LA +     D+Q+    +  G+  R   XXXXXXXXXXXXX  + + P  +R++ +LS+NL A   W   RR   +   AAA     HL+ LTA    L G  F       SAA  SG         +EL + R R +    LR       + G +     EGE E  ++  L   TD  VQNVVDVVARDGWE V    GVVVHRQY+ALGPDGTP  P  PA+ A +                           G   G    PQFACVKA+AIL+VPPEVVYLLFADNSRVGEYNEHCREVKDLE+LS DSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVS+PVEHP APR+SRYVRSEILLAGNFMRPVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLC SSPV FIRRLE AA KLM ELQ+    A   AA G    G  DK
Sbjct:    1 MLRERVAILAATLLLLECHSMSGGATGAI----------PDQQQHRRHVPH----------------YGCTPQRAQDFGSRYPQTGRFEAQHKRGLVVD-----DQPAGEEWEEADLECWSATMAAIVASGSTLALQRTLKPDEQQSASAEGYGRQQRHIRXXXXXXXXXXXXXXXNSSAPRFRRIRAELSANLDA---WRMRRRRARETIPAAAIVIRQHLTHLTAQLSELTGEGFRRAERLLSAANASGNVGIRIAGCAELLRRRGRELFLLGLRKRQNPDGSGGDKLGMGKEGEAERRKMRELQLLTDKIVQNVVDVVARDGWEVVVEREGVVVHRQYLALGPDGTPEAPAAPAAHAQAAGVPKAEAYSASVGGRVEGSADDPAPVGEDSGKFRPPQFACVKASAILSVPPEVVYLLFADNSRVGEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSKPVEHPAAPRTSRYVRSEILLAGNFMRPVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCTSSPVTFIRRLEVAAKKLMLELQQQQKRAPHGAAGGDTGTGDVDK 557
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BLAST of mRNA_S-dermatodea_contig12262.1421.1 vs. uniprot
Match: D8LAW9_ECTSI (START domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAW9_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 7.110e-56
Identity = 125/268 (46.64%), Postives = 163/268 (60.82%), Query Frame = 1 
Query:  871 EEPEGEYEGSRLARL---TDMTVQNVVDVVARDGWEHVATTSGVVVHRQYIALGPDGTPAPPGGPASGADSGTAXXXXXXXXXXXXXXXXXXXXGGGGVCGADAAPQFACVKATAILAVPPEVVYLLFADNSRVGEYNEHCREVKDLEILSPDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPVEHPLAPRSSRYVRSEILLAGNFMRPVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCASSPVNFIRRLESAA 1665
            +E EGE   + +  L    D +V+ V+ V+  DGWE V   SGVVV R+++                                 XXXXXXXXXX   G+    AA +FACVKA   L      +Y LF DN RV EYN++C+EV+DLE LS D+K++WA + R  PFKARDF T VH+RTL DGT+  ++RPVEHP A R  +YVR+EIL+A N MRP   DPS+T+F+ VTH+NPGG A++R GA +VN LCA +PVN +  LE +A
Sbjct:  233 KEEEGEVISAEMLALQAENDASVEAVLAVIESDGWERVTEKSGVVVVRKFVXX-------------------------------XXXXXXXXXXXXRGIVDEGAAAKFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVLNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSA 469
[Close]
BLAST of mRNA_S-dermatodea_contig12262.1421.1 vs. uniprot
Match: I2CRQ3_NANGC (Lipid transfer protein 5-like protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRQ3_NANGC)

HSP 1 Score: 197 bits (500), Expect = 9.180e-56
Identity = 90/154 (58.44%), Postives = 120/154 (77.92%), Query Frame = 1 
Query: 1150 GGVCGADAAPQFACVKATAILAVPPEVVYLLFADNSRVGEYNEHCREVKDLEILSPDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPVEHPLAPRSSRYVRSEILLAGNFMRPVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVN 1611
            GGV G     +FACVKA  ++  P + V+ LF D++RVGEYNEHCRE++D++ LS ++K+TW+ASGR GPFKARDFCT+VH+R L DG L  V+R  EH  APRS +YVRSEILLAGN MRP P DP++T  + +TH+NPGG+ +++AGA++VN
Sbjct:    6 GGVGGGRDGGRFACVKAVGVVDAPVDRVFDLFLDSARVGEYNEHCREIQDIDTLSANTKVTWSASGRYGPFKARDFCTVVHYRRLEDGRLVVVNRAAEHVRAPRSDKYVRSEILLAGNIMRPHPSDPNKTLLVTLTHINPGGSIDSKAGALMVN 159
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BLAST of mRNA_S-dermatodea_contig12262.1421.1 vs. uniprot
Match: A0A7S2V5A8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5A8_9STRA)

HSP 1 Score: 202 bits (513), Expect = 1.540e-54
Identity = 97/174 (55.75%), Postives = 125/174 (71.84%), Query Frame = 1 
Query: 1180 QFACVKATAILAVPPEVVYLLFADNSRVGEYNEHCREVKDLEILSPDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPVEHPLAPRSSRYVRSEILLAGNFMRPVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCASSPVNFIRRLESAAVKLM--HELQES 1695
            +FA +KA   +  P E V+ LF DNSRVGEYN+HC E+KDLE + P +K+TW+ASG+ GPFKARDFCTLVHF TL+DGT A VS P  HP AP +SRYVRSE+++AG+FMR  P DP++T F  +T VNPGG A +   A +VNSL    P+ F++++E AA + M  H  Q S
Sbjct:  219 KFAVIKAVGTIDAPIEEVHKLFVDNSRVGEYNDHCHEIKDLEWVGPRTKVTWSASGKYGPFKARDFCTLVHFATLADGTQAIVSVPFNHPQAPATSRYVRSEVIMAGHFMRRDPKDPNKTAFTTITQVNPGGIAGSAGAAKIVNSLSTQGPITFVKKVELAAQQTMKQHSRQHS 392
[Close]
BLAST of mRNA_S-dermatodea_contig12262.1421.1 vs. uniprot
Match: A0A6U4ZLH7_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4ZLH7_HEMAN)

HSP 1 Score: 193 bits (491), Expect = 2.970e-53
Identity = 89/163 (54.60%), Postives = 118/163 (72.39%), Query Frame = 1 
Query: 1174 APQFACVKATAILAVPPEVVYLLFADNSRVGEYNEHCREVKDLEILSPDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPVEHPLAPRSSRYVRSEILLAGNFMRPVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCASSPVNFIRRLESA 1662
            A +F CVKA A+L   P  VY LF DN+RV EYNE C++++DLE  +  +K+TW+AS R+GPFK RDF T VH+RTL D TL  V+R  +HP AP++ RY+R EI+L GN M+PVP DP +T F M+THVNPGG A TR G M++NS  A+ P++F++ L  A
Sbjct:   35 ASKFLCVKAEAVLDASPAQVYTLFVDNTRVREYNEFCKQIRDLEYKNSTTKVTWSASARIGPFKERDFVTRVHYRTLPDQTLLVVNRAEDHPAAPQTDRYLRMEIVLGGNVMKPVPSDPEKTMFTMLTHVNPGGVAGTRMGTMIMNSAAANGPISFVQGLRDA 197
[Close]
BLAST of mRNA_S-dermatodea_contig12262.1421.1 vs. uniprot
Match: A0A6H5JSI0_9PHAE (START domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI0_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 1.390e-52
Identity = 95/166 (57.23%), Postives = 122/166 (73.49%), Query Frame = 1 
Query: 1168 DAAPQFACVKATAILAVPPEVVYLLFADNSRVGEYNEHCREVKDLEILSPDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPVEHPLAPRSSRYVRSEILLAGNFMRPVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCASSPVNFIRRLESAA 1665
            +AA +FACVKA   L      +Y LF DN RV EYN++C+EV+DLE LS D+K++WA + R  PFKARDF T VH+RTL DGT+  V+RPVEHP A R  +YVR+EIL+A N MRP   DPS+T+F+ VTH+NPGG A++R GA +VN LCA +PVN +  LE +A
Sbjct:  239 EAAAKFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVVNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSA 404
[Close]
BLAST of mRNA_S-dermatodea_contig12262.1421.1 vs. uniprot
Match: A0A7S2RES9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RES9_9STRA)

HSP 1 Score: 194 bits (493), Expect = 1.570e-52
Identity = 92/165 (55.76%), Postives = 119/165 (72.12%), Query Frame = 1 
Query: 1171 AAPQFACVKATAILAVPPEVVYLLFADNSRVGEYNEHCREVKDLEILSPDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPVEHPLAPRSSRYVRSEILLAGNFMRPVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCASSPVNFIRRLESAA 1665
            AA +F+CVKATAIL   P  VY LF DNS+V EYNEHC++++D+E +S D+K+ W+ +   GPFK RDF T+VH+R   DGTL  ++RP  HP  P   ++ R+E+LLAGN MRPV GD S+TEF M+THVNPGG      GA +VN +C+  PV+FIRRLE AA
Sbjct:  132 AAAKFSCVKATAILNASPHDVYKLFLDNSQVHEYNEHCQKLEDVERVSKDTKVAWSVTAPFGPFKPRDFVTMVHYRREPDGTLMVLNRPCNHPDRPPVPQFQRAELLLAGNVMRPVQGDKSKTEFTMITHVNPGGVVNNALGAAIVNRICSQGPVDFIRRLERAA 296
[Close]
BLAST of mRNA_S-dermatodea_contig12262.1421.1 vs. uniprot
Match: A0A7S0QTI7_9CRYP (Hypothetical protein (Fragment) n=2 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QTI7_9CRYP)

HSP 1 Score: 184 bits (468), Expect = 7.250e-50
Identity = 87/161 (54.04%), Postives = 117/161 (72.67%), Query Frame = 1 
Query: 1174 APQFACVKATAILAVPPEVVYLLFADNSRVGEYNEHCREVKDLEILSPDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPVEHPLAPRSS-RYVRSEILLAGNFMRPVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCASSPVNFIRRL 1653
            A +F C+KA  +L  PP  V+ LF DN+R GEYNE CRE++D+E +   +K+TW+ASGR+GPFK RDF T VH+R+L DGTL  V+R  + PL   SS RY+R E+ L G+ +RP+PG+P+RT +  + HVNPGG AETR GAML+N+  AS PV  ++RL
Sbjct:   38 AAKFDCIKAAGVLDAPPAEVFELFIDNARAGEYNEFCRELRDVEFIDNATKVTWSASGRVGPFKERDFVTRVHYRSLPDGTLLVVNRAEDAPLTAASSDRYLRMEMYLGGSVLRPLPGNPNRTIYTTLAHVNPGGVAETRIGAMLMNAAAASGPVKLVQRL 198
[Close]
BLAST of mRNA_S-dermatodea_contig12262.1421.1 vs. uniprot
Match: A0A7S4NFJ2_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NFJ2_GUITH)

HSP 1 Score: 184 bits (467), Expect = 1.700e-49
Identity = 90/169 (53.25%), Postives = 116/169 (68.64%), Query Frame = 1 
Query: 1180 QFACVKATAILAVPPEVVYLLFADNSRVGEYNEHCREVKDLEILSPDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPVEHPLAPRSSRYVRSEILLAGNFMRPVPG-----DPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCASSPVNFIRRLESAAVK 1671
            +F CV ++ IL  PPE VY  F DNSRV EYNE C++VKDLE L  ++KITW+ASGR+GPFK RDF T VH+RT SDG+L   +R  +HP AP + R++R EI++ GN +RP        D SRT   ++THVNPGG AETR G M++NS  AS P+ FI+ L    V+
Sbjct:   58 KFFCVMSSGILDAPPEQVYTYFVDNSRVHEYNEFCKQVKDLEYLDANTKITWSASGRVGPFKERDFVTRVHYRTASDGSLIIANRAEKHPKAPETERFLRMEIMIGGNVLRPAREADGSLDHSRTNITVLTHVNPGGIAETRLGTMILNSAAASGPIKFIQGLRQCIVR 226
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12262.1421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLJ0_ECTSI1.000e-13651.35START domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5J623_9PHAE1.670e-13551.78START domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LAW9_ECTSI7.110e-5646.64START domain-containing protein n=1 Tax=Ectocarpus... [more]
I2CRQ3_NANGC9.180e-5658.44Lipid transfer protein 5-like protein (Fragment) n... [more]
A0A7S2V5A8_9STRA1.540e-5455.75Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6U4ZLH7_HEMAN2.970e-5354.60Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A6H5JSI0_9PHAE1.390e-5257.23START domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S2RES9_9STRA1.570e-5255.76Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0QTI7_9CRYP7.250e-5054.04Hypothetical protein (Fragment) n=2 Tax=Cryptomona... [more]
A0A7S4NFJ2_GUITH1.700e-4953.25Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12262contigS-dermatodea_contig12262:2298..5839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.4
Seed ortholog evalue5.6e-30
Seed eggNOG ortholog2880.D7G2E9
KEGG koko:K10779
EggNOG free text desc.lipid binding
EggNOG OGsKOG2761@1,KOG2761@2759
EC3.6.4.12
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03000,ko03036
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionSTART domain
Ec32 orthologEc-22_001140.1
Exons5
Model size2132
Cds size1863
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924240.4048195-UTR-S-dermatodea_contig12262:2297..24941622924240.4048195-UTR-S-dermatodea_contig12262:2297..2494Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12262 2298..2494 -
1694079117.6914926-UTR-S-dermatodea_contig12262:2297..24941694079117.6914926-UTR-S-dermatodea_contig12262:2297..2494Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12262 2298..2494 -
1622924240.4668074-UTR-S-dermatodea_contig12262:5767..58391622924240.4668074-UTR-S-dermatodea_contig12262:5767..5839Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12262 5768..5839 -
1694079117.763317-UTR-S-dermatodea_contig12262:5767..58391694079117.763317-UTR-S-dermatodea_contig12262:5767..5839Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12262 5768..5839 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924240.4157512-CDS-S-dermatodea_contig12262:2494..30641622924240.4157512-CDS-S-dermatodea_contig12262:2494..3064Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12262 2495..3064 -
1694079117.710463-CDS-S-dermatodea_contig12262:2494..30641694079117.710463-CDS-S-dermatodea_contig12262:2494..3064Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12262 2495..3064 -
1622924240.425764-CDS-S-dermatodea_contig12262:4228..44641622924240.425764-CDS-S-dermatodea_contig12262:4228..4464Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12262 4229..4464 -
1694079117.7224135-CDS-S-dermatodea_contig12262:4228..44641694079117.7224135-CDS-S-dermatodea_contig12262:4228..4464Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12262 4229..4464 -
1622924240.4359045-CDS-S-dermatodea_contig12262:4542..49711622924240.4359045-CDS-S-dermatodea_contig12262:4542..4971Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12262 4543..4971 -
1694079117.7381012-CDS-S-dermatodea_contig12262:4542..49711694079117.7381012-CDS-S-dermatodea_contig12262:4542..4971Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12262 4543..4971 -
1622924240.4461524-CDS-S-dermatodea_contig12262:5082..53071622924240.4461524-CDS-S-dermatodea_contig12262:5082..5307Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12262 5083..5307 -
1694079117.748201-CDS-S-dermatodea_contig12262:5082..53071694079117.748201-CDS-S-dermatodea_contig12262:5082..5307Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12262 5083..5307 -
1622924240.4573462-CDS-S-dermatodea_contig12262:5364..57671622924240.4573462-CDS-S-dermatodea_contig12262:5364..5767Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12262 5365..5767 -
1694079117.7559178-CDS-S-dermatodea_contig12262:5364..57671694079117.7559178-CDS-S-dermatodea_contig12262:5364..5767Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12262 5365..5767 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12262.1421.1prot_S-dermatodea_contig12262.1421.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12262 2495..5767 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12262.1421.1

>prot_S-dermatodea_contig12262.1421.1 ID=prot_S-dermatodea_contig12262.1421.1|Name=mRNA_S-dermatodea_contig12262.1421.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=621bp
MLGERVAILAATLLFFKWFPRQGACLAAAAAAAGAATAQPRSQQRNWHTR
HRLEAPTARPPTFTLIVASGRPPRAEDFASHLPHSGRFGPQHKSGPKVAA
AAFVGEAGGVEESWSTALAALAASATALAHETRPCHDQQEQRQNQPQGKD
HRDQRPLQPQHRRHHDDRARSPAFPLLQRLQEDLSSNLHALSGWNSERRD
RLQRRRAAAPEWAAHLSGLTAGAGRLAGGAFSAAVVSGGSELRKIRVRVT
RYALRNAALDGAADGAEEPEGEYEGSRLARLTDMTVQNVVDVVARDGWEH
VATTSGVVVHRQYIALGPDGTPAPPGGPASGADSGTAATAAAASAAPPMA
AAKVAAVGGGGVCGADAAPQFACVKATAILAVPPEVVYLLFADNSRVGEY
NEHCREVKDLEILSPDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLA
QVSRPVEHPLAPRSSRYVRSEILLAGNFMRPVPGDPSRTEFLMVTHVNPG
GAAETRAGAMLVNSLCASSPVNFIRRLESAAVKLMHELQESAHAHDAAAT
GVKAAGREDKASPDSARPTPLQPTPPPPSKPPEGNTSGDRVGDIEEPSGA
ARVLPEQELSPGSSGGVGGR*
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mRNA from alignment at S-dermatodea_contig12262:2298..5839-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12262.1421.1 ID=mRNA_S-dermatodea_contig12262.1421.1|Name=mRNA_S-dermatodea_contig12262.1421.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3542bp|location=Sequence derived from alignment at S-dermatodea_contig12262:2298..5839- (Saccorhiza dermatodea SderLu1190fm monoicous)
CACACAGCCCAGGAAGACGCACAGGGGGTTTTTCCTCCTGGGCAACCGGT
GGGAGAAGGCGGCCGAGGTTTCATGCTCGGGGAGCGGGTGGCCATCCTGG
CCGCAACGCTCCTCTTTTTCAAATGGTTCCCTCGGCAAGGAGCATGCTTA
GCAGCAGCAGCAGCAGCGGCGGGAGCAGCGACGGCGCAACCCCGTTCTCA
GCAGAGGAACTGGCACACCCGGCATCGCCTAGAAGCTCCCACTGCAAGGC
CTCCAACTTTCACCCTGATCGTCGCGAGTGGAAGGCCCCCGAGGGCGGAG
GACTTCGCGAGCCACCTGCCTCATTCTGGACGGTTTGGACCGCAACACAA
GAGCGGGCCAAAGGTTGCTGCGGCGGCATTTGTGGGAGAGGCAGGGGGGG
TGGAGGAGTCATGGAGCACAGCCCTGGCAGCGTTGGCCGCTTCCGCGACC
GCGCTCGCACACGAAACACGCCCATGTTCCTGCCCTCCCCGCCTTGGCGA
GGAAGCAGACGGCGATCGATCGTCGCGGAGAGGCCACGATCAACAAGAAC
AACGGCAAAACCAGCCGCAGGGCAAGGACCATCGCGACCAGCGGCCGCTG
CAACCCCAACACCGAAGACATCACGACGACCGCGCCAGGTCGCCAGCATT
CCCTCTGCTCCAACGACTACAGGAAGACCTTTCCTCAAACCTGCATGCCC
TCTCAGGCTGGAACAGCGAGCGCCGCGATCGGCTGCAGCGGCGAAGAGCC
GCAGCACGTCGTCGTCCACTCTCGATTGTCGCCCGCCTGCCAGCCCTGGG
AACGGCCGGAGGGTTGCGCGCGGTCGATTCCGCCTCGGAGGCCGCCCTCG
GCGCGTGCTCGGAGCTAGCCGAGTGGGCCGCGCACCTCTCGGGACTAACA
GCCGGAGCAGGCCGCCTCGCGGGGGGCGCGTTCTCCGCCGCGGTCGTGTC
CGGAGGCTCCGAGCTCCGAAAAATCCGCGTTCGAGTCACCCGTTACGCGC
TTCGGAACGCTGCCCTGGACGGGGCCGCCGACGGTGCGGAGGAGCCCGAG
GGGGAGTACGAAGGGTCGCGGCTGGCCAGGCTCACCGACATGACCGTGCA
AAATGTCGTGGACGTCGTCGCGCGGGACGGGTGGGAGCACGTGGCCACGA
CGAGCGGGGTCGTTGTGCACCGGCAGTACATCGCGCTAGGCCCCGACGGC
ACCCCCGCCCCCCCTGGGGGACCTGCGAGCGGGGCTGATTCTGGCACCGC
CGCTACTGCAGCCGCGGCCTCGGCTGCGCCTCCGATGGCGGCGGCAAGTG
GAGGGGAAGGCGGAGAGCGAGGAGTGTCGGTGAGCGATGGGGCAACGGCT
TCGGTGGTGGCTGTGGTGGCAACAGAGGTGGCGGCTGTCGGGGGGGGGGG
GGTTTGCGGGGCGGACGCGGCGCCGCAGTTCGCGTGCGTGAAAGCGACGG
CGATCCTGGCGGTGCCGCCGGAGGTCGTGTACCTCCTGTTCGCGGATAAC
TCTCGCGTCGGGGAGTACAACGAGCACTGCAGGGAGGTGAAGGACCTGGA
GATTCTGTCGCCGGACAGCAAGATCACCTGGGCCGCCAGCGGGAGGATGG
GTCCGTTTAAGGTGAGGGGGTTGCCGTGACATTTTAATACTTTCTCTCTC
TGGCAAGCTGAGCTCTTTCTTTGATGGTTTTTATGGAAGCGCGGCCATGA
TGAGAACGACCGAGTTTCGGCAGGTTAACTGCTGTACGAAAAGCTGTGTG
TGCATGTTGGCTGGTTTTGAGGTCATGAGCGGGGCGGTCAAGTTTCGTTC
GCTTGGGTCCAATCCTAGTCCCCTGCTCACAAGAAGCTTGCAGAGATGAT
GCGTATTGCTGCTGTGTATAAAAAATACTGCTGTGCAGAGTTTCAGTATC
TCCATCGTTGCTCATTCTGTCAACTGAAGGTGATATGCTGAGAGGTATAC
AGTATTGTATCATATTAATACTGTAGTCGTCTTCGAAAATCGGCCGGGCC
TTCTGTTTCACGTTTGTTTTTAGTGCCCCGTTGGATGCTAAATTGTGTGC
GTCAATCAACCTCTCGATTCTACCGCAATCTTCATCCAGCCTCTTTCGCG
ATGTGGGTGGCGACAGTCCTACTCCAACCCCCACAGTCCACGAAAACGCC
TTTTGTTTTTTTAATACCTCCCATCGCTTGACACTTAGATACGGCTCGTA
CGAGCTATGTAGTTGTTCATGTGTAGATGCAAGGTCAACACCCTTGCCGA
CAGCAGCATGCGTCGTAACTCAAAACCCCCTGCTCCCCCAGAATGCATGC
ATAGAAAAACGGAGCTTCGAGATGGTTTTGGGACCCTTTTTTTTCGTTTT
TTATTGTTGCAAGAAGGCCCCAATCAAGCGTTCCTGGAAATTAAGTGTGA
AGAACCGATCTCAAGAGATGCAGAGATGCCCCCGAAACAACAATTATTTC
AAAAGCATAGAGCGAGCGTGCGGGTTCAACATTGTTGAAAGGGGGAAAAT
GTGGTCAAGCTACGTACGCTGGAGCTTTGCGTTTACGTATGATGCTATTA
TATTGTTGCGTCATTTGTGATGCTATGGAGTCGTTTAGGAAATGTCCTCG
TCTTGGCGATATCTTGGTATTATAGTGTAATTGTGAAATGGTGTGCATCG
TGAGGCAATAAAGCTTGTCGTGACACCCCCCCCCCCGCGCGCGCGCCCTC
CCCCTTCACGCGCCCCCGCACCCCTCCCCGCCCTCTCGGCGCACGCTTAC
CCCCTGTCGTTGCTCCCGACAACAGGCGCGAGACTTTTGCACGCTCGTGC
ACTTCCGAACCCTCAGCGACGGCACCCTCGCTCAGGTGTCTCGCCCCGTG
GAGCACCCCCTGGCTCCGCGCTCGAGTCGCTACGTTCGCAGCGAGATCTT
GCTGGCGGGGAACTTCATGCGCCCGGTCCCCGGAGACCCTTCGCGGACGG
AGTTCTTGATGGTGACGCATGTCAACCCGGGAGGTGCGGCCGAGACACGG
GCCGGAGCCATGCTCGTGAACTCGCTCTGCGCGAGCTCGCCCGTCAACTT
CATCCGCAGGCTGGAGTCGGCCGCGGTGAAGCTCATGCACGAGCTGCAGG
AAAGCGCCCACGCGCACGATGCGGCGGCGACGGGGGTGAAAGCGGCGGGG
AGAGAGGATAAAGCTTCGCCGGACAGTGCCCGTCCGACACCGCTGCAGCC
GACGCCTCCGCCGCCGTCGAAACCCCCAGAGGGGAACACGTCCGGGGATA
GGGTCGGGGATATAGAGGAGCCTTCTGGGGCCGCGAGGGTATTGCCTGAG
CAAGAGCTCTCGCCGGGTTCGTCAGGAGGCGTCGGCGGGCGATGACGGGA
GCCGCAGTGTTTGTGGAAAGCGCTGCCCTGGCGGCGACCTCTTTTAACGT
TGGCAGTTCAGCCCGTTTGCGAGGAGGGCGGTTGGTCTCGCGGGTACGGA
GTCGTGCGTGCTTTGTGCACTGTTTTTCGCCCGCGTTTTGTGTTTGAAGT
GGCGTTTGTAACGGTGTTTAGGTGCACATGACCGGAGCAGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12262:2298..5839-

>mRNA_S-dermatodea_contig12262.1421.1 ID=mRNA_S-dermatodea_contig12262.1421.1|Name=mRNA_S-dermatodea_contig12262.1421.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3726bp|location=Sequence derived from alignment at S-dermatodea_contig12262:2298..5839- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTCGGGGAGCGGGTGGCCATCCTGGCCGCAACGCTCCTCTTTTTCAA
ATGGTTCCCTCGGCAAGGAGCATGCTTAGCAGCAGCAGCAGCAGCGGCGG
GAGCAGCGACGGCGCAACCCCGTTCTCAGCAGAGGAACTGGCACACCCGG
CATCGCCTAGAAGCTCCCACTGCAAGGCCTCCAACTTTCACCCTGATCGT
CGCGAGTGGAAGGCCCCCGAGGGCGGAGGACTTCGCGAGCCACCTGCCTC
ATTCTGGACGGTTTGGACCGCAACACAAGAGCGGGCCAAAGGTTGCTGCG
GCGGCATTTGTGGGAGAGGCAGGGGGGGTGGAGGAGTCATGGAGCACAGC
CCTGGCAGCGTTGGCCGCTTCCGCGACCGCGCTCGCACACGAAACACGCC
CATATGCTCGGGGAGCGGGTGGCCATCCTGGCCGCAACGCTCCTCTTTTT
CAAATGGTTCCCTCGGCAAGGAGCATGCTTAGCAGCAGCAGCAGCAGCGG
CGGGAGCAGCGACGGCGCAACCCCGTTCTCAGCAGAGGAACTGGCACACC
CGGCATCGCCTAGAAGCTCCCACTGCAAGGCCTCCAACTTTCACCCTGAT
CGTCGCGAGTGGAAGGCCCCCGAGGGCGGAGGACTTCGCGAGCCACCTGC
CTCATTCTGGACGGTTTGGACCGCAACACAAGAGCGGGCCAAAGGTTGCT
GCGGCGGCATTTGTGGGAGAGGCAGGGGGGGTGGAGGAGTCATGGAGCAC
AGCCCTGGCAGCGTTGGCCGCTTCCGCGACCGCGCTCGCACACGAAACAC
GCCCATGCCACGATCAACAAGAACAACGGCAAAACCAGCCGCAGGGCAAG
GACCATCGCGACCAGCGGCCGCTGCAACCCCAACACCGAAGACATCACGA
CGACCGCGCCAGGTCGCCAGCATTCCCTCTGCTCCAACGACTACAGGAAG
ACCTTTCCTCAAACCTGCATGCCCTCTCAGGCTGGAACAGCGAGCGCCGC
GATCGGCTGCAGCGGCGAAGAGCCGCAGCACGCCACGATCAACAAGAACA
ACGGCAAAACCAGCCGCAGGGCAAGGACCATCGCGACCAGCGGCCGCTGC
AACCCCAACACCGAAGACATCACGACGACCGCGCCAGGTCGCCAGCATTC
CCTCTGCTCCAACGACTACAGGAAGACCTTTCCTCAAACCTGCATGCCCT
CTCAGGCTGGAACAGCGAGCGCCGCGATCGGCTGCAGCGGCGAAGAGCCG
CAGCACCCGAGTGGGCCGCGCACCTCTCGGGACTAACAGCCGGAGCAGGC
CGCCTCGCGGGGGGCGCGTTCTCCGCCGCGGTCGTGTCCGGAGGCTCCGA
GCTCCGAAAAATCCGCGTTCGAGTCACCCGTTACGCGCTTCGGAACGCTG
CCCTGGACGGGGCCGCCGACGGTGCGGAGGAGCCCGAGGGGGAGTACGAA
GGGTCGCGGCTGGCCAGGCTCACCGACATGACCGTGCAAAATGTCGTGGA
CGTCGTCGCGCGGGACGGGTGGGAGCACGTGGCCACGACGAGCGGGGTCG
TTGTGCACCGGCAGTACATCGCGCTAGGCCCCGACGGCACCCCCGCCCCC
CCTGGGGGACCTGCGAGCGGGGCTGATTCTGGCACCGCCGCTACTGCAGC
CGCGGCCTCGGCTGCGCCTCCGATGGCGGCGGCAACCGAGTGGGCCGCGC
ACCTCTCGGGACTAACAGCCGGAGCAGGCCGCCTCGCGGGGGGCGCGTTC
TCCGCCGCGGTCGTGTCCGGAGGCTCCGAGCTCCGAAAAATCCGCGTTCG
AGTCACCCGTTACGCGCTTCGGAACGCTGCCCTGGACGGGGCCGCCGACG
GTGCGGAGGAGCCCGAGGGGGAGTACGAAGGGTCGCGGCTGGCCAGGCTC
ACCGACATGACCGTGCAAAATGTCGTGGACGTCGTCGCGCGGGACGGGTG
GGAGCACGTGGCCACGACGAGCGGGGTCGTTGTGCACCGGCAGTACATCG
CGCTAGGCCCCGACGGCACCCCCGCCCCCCCTGGGGGACCTGCGAGCGGG
GCTGATTCTGGCACCGCCGCTACTGCAGCCGCGGCCTCGGCTGCGCCTCC
GATGGCGGCGGCAAAGGTGGCGGCTGTCGGGGGGGGGGGGGTTTGCGGGG
CGGACGCGGCGCCGCAGTTCGCGTGCGTGAAAGCGACGGCGATCCTGGCG
GTGCCGCCGGAGGTCGTGTACCTCCTGTTCGCGGATAACTCTCGCGTCGG
GGAGTACAACGAGCACTGCAGGGAGGTGAAGGACCTGGAGATTCTGTCGC
CGGACAGCAAGATCACCTGGGCCGCCAGCGGGAGGATGGGTCCGTTTAAG
AGGTGGCGGCTGTCGGGGGGGGGGGGGTTTGCGGGGCGGACGCGGCGCCG
CAGTTCGCGTGCGTGAAAGCGACGGCGATCCTGGCGGTGCCGCCGGAGGT
CGTGTACCTCCTGTTCGCGGATAACTCTCGCGTCGGGGAGTACAACGAGC
ACTGCAGGGAGGTGAAGGACCTGGAGATTCTGTCGCCGGACAGCAAGATC
ACCTGGGCCGCCAGCGGGAGGATGGGTCCGTTTAAGGCGCGAGACTTTTG
CACGCTCGTGCACTTCCGAACCCTCAGCGACGGCACCCTCGCTCAGGTGT
CTCGCCCCGTGGAGCACCCCCTGGCTCCGCGCTCGAGTCGCTACGTTCGC
AGCGAGATCTTGCTGGCGGGGAACTTCATGCGCCCGGTCCCCGGAGACCC
TTCGCGGACGGAGTTCTTGATGGTGACGCATGTCAACCCGGGAGGTGCGG
CCGAGACACGGGCCGGAGCCATGCTCGTGAACTCGCTCTGCGCGAGCTCG
CCCGTCAACTTCATCCGCAGGCTGGAGTCGGCCGCGGTGAAGCTCATGCA
CGAGCTGCAGGAAAGCGCCCACGCGCACGATGCGGCGGCGACGGGGGTGA
AAGCGGCGGGGAGAGAGGATAAAGCTTCGCCGGACAGTGCCCGTCCGACA
CCGCTGCAGCCGACGCCTCCGCCGCCGTCGAAACCCCCAGAGGGGAACAC
GTCCGGGGATAGGGTCGGGGATATAGAGGAGCCTTCTGGGGCCGCGAGGG
TATTGCCTGAGCAAGAGCTCTCGCCGGGTTCGTCAGGAGGCGTCGGCGGG
CGATGAGCGCGAGACTTTTGCACGCTCGTGCACTTCCGAACCCTCAGCGA
CGGCACCCTCGCTCAGGTGTCTCGCCCCGTGGAGCACCCCCTGGCTCCGC
GCTCGAGTCGCTACGTTCGCAGCGAGATCTTGCTGGCGGGGAACTTCATG
CGCCCGGTCCCCGGAGACCCTTCGCGGACGGAGTTCTTGATGGTGACGCA
TGTCAACCCGGGAGGTGCGGCCGAGACACGGGCCGGAGCCATGCTCGTGA
ACTCGCTCTGCGCGAGCTCGCCCGTCAACTTCATCCGCAGGCTGGAGTCG
GCCGCGGTGAAGCTCATGCACGAGCTGCAGGAAAGCGCCCACGCGCACGA
TGCGGCGGCGACGGGGGTGAAAGCGGCGGGGAGAGAGGATAAAGCTTCGC
CGGACAGTGCCCGTCCGACACCGCTGCAGCCGACGCCTCCGCCGCCGTCG
AAACCCCCAGAGGGGAACACGTCCGGGGATAGGGTCGGGGATATAGAGGA
GCCTTCTGGGGCCGCGAGGGTATTGCCTGAGCAAGAGCTCTCGCCGGGTT
CGTCAGGAGGCGTCGGCGGGCGATGA
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