mRNA_S-dermatodea_contig12255.1418.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
|
Overview
Homology
BLAST of mRNA_S-dermatodea_contig12255.1418.1 vs. uniprot
Match: A0A6H5L6A2_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6A2_9PHAE) HSP 1 Score: 339 bits (869), Expect = 1.060e-108 Identity = 177/303 (58.42%), Postives = 210/303 (69.31%), Query Frame = 3
Query: 3 DAAATDFCHEIKLQHYPTFMFFGSGKFHDHDPVSGVVLGPRPTEHDSSAKFPSGAMVYHEIMIDWVKAMHVVSGSNRLMEKINVFG--GGRK--ASSEERLVAEIEALERQNLQLQEAMLGGPMGTGEDLSQLPYGYGDPYKELSEVGYDLEFEPVMACVIDMAVQYCDIEGVKDQDPWCKTVESCIVTEFAGDECWPPSCPLSTEGCELASYCLTPELLETYVEFFQEAEDLEEAALTGTDGAVGGLGIG----------EEGDGEGAETAGASLPPFFGSRRPAASPGG----MDRAGDER 857
D A FC EI LQ YPTFMFFG+GKFHDHDP+SG+VLGPRPTEHDSSAKFP+GA+VYHE++ W K MH +SG NR+ME++NVFG GGRK A+SEERL+AEIEALER+N QLQ+AM GG S LPYG+GDPY EL +V YD EFEPVM+CVIDMA+QYCD+EGVK+ DPWC+T+ESCI TEF GDECWP SCP GC++ S+CLTPE+ + Y++ E AA + A G+G G A LPPFFG RPA S GG +DR DER
Sbjct: 114 DTTAAAFCQEINLQFYPTFMFFGAGKFHDHDPLSGMVLGPRPTEHDSSAKFPAGAVVYHEVLAGWTKTMHFISGYNRVMERLNVFGSRGGRKDRAASEERLLAEIEALERKNHQLQQAMTGGEA----QESSLPYGHGDPYNELWKVAYDAEFEPVMSCVIDMAMQYCDVEGVKESDPWCRTLESCIATEFVGDECWPSSCPFQEGGCQITSFCLTPEVFDAYMQLIDE----HGAAAAAEEEAGEGVGAGWAEXXXXXXXXXXXXXXXXAAAPGLPPFFG--RPAGSQGGGGVGVDRKSDER 406
BLAST of mRNA_S-dermatodea_contig12255.1418.1 vs. uniprot
Match: D7FNN2_ECTSI (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNN2_ECTSI) HSP 1 Score: 199 bits (505), Expect = 1.390e-56 Identity = 101/144 (70.14%), Postives = 117/144 (81.25%), Query Frame = 3
Query: 3 DAAATDFCHEIKLQHYPTFMFFGSGKFHDHDPVSGVVLGPRPTEHDSSAKFPSGAMVYHEIMIDWVKAMHVVSGSNRLMEKINVFGG--GRK--ASSEERLVAEIEALERQNLQLQEAMLGGPMGTGEDLSQLPYGYGDPYKEL 422
D A FC EI LQ YPTFMFFG+GKFHDHDP+SG+VLGPRPTEHDSSAKFP+GA+VYHE++ W K MH +SG NR+ME++NVFGG GRK A+SEERL+AEIEALER+N QLQ+AM GG T E S LPYG+GDPY EL
Sbjct: 114 DTTAAAFCQEINLQFYPTFMFFGAGKFHDHDPLSGMVLGPRPTEHDSSAKFPAGAVVYHEVLAGWTKTMHFISGYNRVMERLNVFGGRGGRKDRAASEERLLAEIEALERKNHQLQQAMTGGE--TQE--SSLPYGHGDPYNEL 253
BLAST of mRNA_S-dermatodea_contig12255.1418.1 vs. uniprot
Match: D7FNN1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNN1_ECTSI) HSP 1 Score: 115 bits (288), Expect = 2.660e-26 Identity = 44/65 (67.69%), Postives = 54/65 (83.08%), Query Frame = 3
Query: 459 MACVIDMAVQYCDIEGVKDQDPWCKTVESCIVTEFAGDECWPPSCPLSTEGCELASYCLTPELLE 653
M+CVIDMA+QYCD+EGVK+ DPWC T+ESCI TEF GDECWP SCP GC++ S+CLTPE+ +
Sbjct: 1 MSCVIDMAMQYCDVEGVKESDPWCSTLESCIATEFVGDECWPSSCPFQEGGCQITSFCLTPEMFD 65
BLAST of mRNA_S-dermatodea_contig12255.1418.1 vs. uniprot
Match: A0A1E7FPL8_9STRA (Thioredoxin domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FPL8_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 7.610e-5 Identity = 28/80 (35.00%), Postives = 45/80 (56.25%), Query Frame = 3
Query: 3 DAAATDFCHEIKLQHYPTFMFFGSGKFHDHDPVSGVVLGPRPTEH-------DSSAKFPSGAMVYHEIMIDWVKAMHVVS 221
+AA + C IK+ HYPT MF GSG F+D DP++ ++LG + ++ KF G Y + ++DW++ M +S
Sbjct: 121 NAAHMELCKSIKVTHYPTLMFIGSGPFYDTDPITKLLLGKDKSAGVMGESPVPNTVKF-QGNWQYTDSILDWIRTMQALS 199 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12255.1418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12255.1418.1 >prot_S-dermatodea_contig12255.1418.1 ID=prot_S-dermatodea_contig12255.1418.1|Name=mRNA_S-dermatodea_contig12255.1418.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=272bp MFFGSGKFHDHDPVSGVVLGPRPTEHDSSAKFPSGAMVYHEIMIDWVKAMback to top mRNA from alignment at S-dermatodea_contig12255:678..4331- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig12255.1418.1 ID=mRNA_S-dermatodea_contig12255.1418.1|Name=mRNA_S-dermatodea_contig12255.1418.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3654bp|location=Sequence derived from alignment at S-dermatodea_contig12255:678..4331- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig12255:678..4331- >mRNA_S-dermatodea_contig12255.1418.1 ID=mRNA_S-dermatodea_contig12255.1418.1|Name=mRNA_S-dermatodea_contig12255.1418.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1632bp|location=Sequence derived from alignment at S-dermatodea_contig12255:678..4331- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |