mRNA_S-dermatodea_contig1225.1415.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig1225.1415.1 vs. uniprot
Match: A0A6H5KHA4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KHA4_9PHAE) HSP 1 Score: 367 bits (942), Expect = 2.380e-119 Identity = 186/264 (70.45%), Postives = 216/264 (81.82%), Query Frame = 2
Query: 221 MATLGVYFTLPEQGVTSPEILTRCSATPVRLTAESPLRFLAAGHAVLPWAFPGYFGDSKSWLKFLNETHVRYYAELRNPSEGTVLAKHELISLAQHPSRDVAALGLKD------ESRALDDFRSQGLPFTPLVLRQKLLGREDSLRIVGYEVRERPGA-EQGGDPNMVMIRAKGELAARTAKQAFVRTDHATLNPGMCGGAVLDDNLELCGCVEGVVPTAPPEAQVDDQMRALQGMPCVVEWKDLDELLRATVDAADVHDGSSS 991
MATLGV+FTLP+QGV +PEILTRCSATPVR T SPLRFLAA HAV+PWAFPGY +S +WLKF++ET+VRYYAELR+P G VLA+HELISLA+HPSRD+AALGLK ESR L D S+G+PF+PL LR++L+ +SLRIVGYEVRE+PG QG DP M+M+RAKG+LAARTA QAFV T+HATLNPGMCG AVLD + ELCGCVEGVVPTAPPEA V+ +RALQGMPCVVEWKDLD LL AT+ D D + S
Sbjct: 1 MATLGVFFTLPDQGVNTPEILTRCSATPVRQTTSSPLRFLAAAHAVVPWAFPGYHDESHAWLKFIDETNVRYYAELRDPFTGAVLAQHELISLARHPSRDMAALGLKGGDDGDGESRFLRDVGSKGIPFSPLPLRRRLIEPSESLRIVGYEVREQPGGLGQGEDPGMMMVRAKGDLAARTAMQAFVGTEHATLNPGMCGAAVLDSDFELCGCVEGVVPTAPPEAAVEAHVRALQGMPCVVEWKDLDTLLTATMGDKDDGDVAGS 264
BLAST of mRNA_S-dermatodea_contig1225.1415.1 vs. uniprot
Match: D7G6F8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6F8_ECTSI) HSP 1 Score: 183 bits (464), Expect = 1.140e-50 Identity = 91/131 (69.47%), Postives = 107/131 (81.68%), Query Frame = 2
Query: 602 LRQKLLGREDSLRIVGYEVRERPGA-EQGGDPNMVMIRAKGELAARTAKQAFVRTDHATLNPGMCGGAVLDDNLELCGCVEGVVPTAPPEAQVDDQMRALQGMPCVVEWKDLDELLRATVDAADVHDGSSS 991
LR++L+ +SLRIVGYEVRE+PG QG DP M+++RAKG+LAARTA QAFV T+HATLNPGMCG AVLD + ELCGCVEGVVPTAPPEA+V+ +RALQGMPCVVEWKDLD LL AT+ D D + S
Sbjct: 25 LRRRLIDPSESLRIVGYEVREQPGGLGQGEDPGMMIVRAKGDLAARTAMQAFVGTEHATLNPGMCGAAVLDSDFELCGCVEGVVPTAPPEAEVEAHVRALQGMPCVVEWKDLDTLLTATMGDKDDGDAAGS 155
BLAST of mRNA_S-dermatodea_contig1225.1415.1 vs. uniprot
Match: A0A7S2CK26_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CK26_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 7.610e-16 Identity = 69/245 (28.16%), Postives = 116/245 (47.35%), Query Frame = 2
Query: 221 MATLGVYFTLPEQGVTSPEILTRCSATPVRLTAESPLRFLAAGHAVLPWAFPGYFGDSKSWLKFLNETHVRYYAELRNPSEGTVLAKHEL-ISLAQHPSRDVAALGLKDESRALDDFRSQGLPFTPLVLRQKLLGREDSLRIVGYEVRERPGAEQGGDPNMVMIRAKGELAARTAKQAFVRTDHATLNPGMCGGAVLDDNLELCGCVEGVVPTAPPEAQVDDQMRALQGMPCVVEWKDLDELLRA 952
+ ++ +F + E + EIL+R SA V FL + H V PW + Y+ + W++ +N ++ +Y E+R+ G V H L + H + D+A L + S D+ + PL L + L +R++G+E+ + PG + + G + RT+ ++F++T L GMCGG VLD +L+ G +EG+VP P + D L G VE +L LR+
Sbjct: 3 VCSISAWFRVAEH-MAEHEILSRSSACLV--PHGDKCVFLTSSHVVAPWKWRNYY--PQDWIEHVNASNTKYSIEIRDRETGRVRLSHSLELPAVCHETLDIAMLEHQPWS---DEVMAH---MEPLQLASRQLEEGQDVRVMGHEIVDEPGDDIDDVREQLPRDVPGRMLRRTSGRSFIKTA-TVLGDGMCGGPVLDPDLQCHGVIEGIVP--PSNLALGD----LAGAAAFVEATELTSWLRS 229
BLAST of mRNA_S-dermatodea_contig1225.1415.1 vs. uniprot
Match: A0A6U0VMV8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0VMV8_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 1.040e-12 Identity = 75/256 (29.30%), Postives = 113/256 (44.14%), Query Frame = 2
Query: 239 YFTLPEQGVTSPEILTRCSATPVRLTAESPLRFLAAGHAVLPWAFPGYFGDSKSWLKFLNETHVRYYAELRNPSEGTVLAKHEL-ISLAQHPSRDVAALGLKDESRALDDFRSQGLPFTPLVLRQKLL------GREDSLRIVGYEVRERPGA-----------------EQGGDPNMVMIRAKGELAARTAKQAFVRTDHATLNP--------GMCGGAVLDDNLELCGCVEGVVPTAPPEAQV-DDQMRALQGM 907
YF LPEQG++SPE+L+R T + L L + H P+ +P Y+GD WL + + V Y ELR+ +G V+ L S+ H SRD+ +GL ++ L+ PLV RQ L G E I G+EV E G E+ G ++ + L + FV T+ GMCG ++D + ++ G VEGV+ AQ+ ++Q +AL+ M
Sbjct: 35 YFFLPEQGMSSPELLSRTGCTILDGKRSGSLVMLTSSHVAAPFRWPQYYGDVP-WLHHVRQDCVTYALELRD-LQGEVVDTAPLPASVVHHESRDICVMGLPEDLPFLEHLE-------PLV-RQDLSQDAASQGAEKVYYIHGFEVGEMAGEDEEKTXXXXXXXXXXXEERTGQGSVSTEDDRRPLKPLNVEARFVAAKGDTIYARPAMELPFGMCGSPMVDADGKVAGVVEGVIQGPAANAQITEEQRQALEKM 280
BLAST of mRNA_S-dermatodea_contig1225.1415.1 vs. uniprot
Match: A0A1Z5K530_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K530_FISSO) HSP 1 Score: 66.2 bits (160), Expect = 9.890e-8 Identity = 56/192 (29.17%), Postives = 88/192 (45.83%), Query Frame = 2
Query: 329 LRFLAAGHAVLPWAFPGYFGDSKSWLKFLNETHVRYYAELRNPSEGT-VLAKHELI-SLAQHPS-RDVAALGLKDESRALDDFRSQGLPFTPLVLRQKLLGREDSLRIVGYEVRER---------PGAEQGGDPN-----MVMIRAKGELAARTAKQAFVRTDHATLNPGMCGGAVLDDNLELCGCVEGVVP 853
+ +A+ H + P+ + Y+ + WLK + H Y E+ +P++ LAK L + HP RD+A + L++E +L R G+ L KL + + L G+ V ER A + + N +G+LA T + F T L G+CG VLD + +LCG VEG+VP
Sbjct: 108 VHIVASSHVLAPYLWQDYY--PQEWLKRVRAEHCTYSLEVFDPNKPQEALAKLALNRDVFHHPEGRDIALIHLQEEHSSLKLLRRLGVAMHRLRDPDKLYQKGEDLLFDGFVVSERNVADSESFSAAASKQNNTNEDTRVFYPYTEQGKLAFHTNDRFFATTPEP-LPEGLCGAPVLDQDGDLCGTVEGIVP 296 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1225.1415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1225.1415.1 >prot_S-dermatodea_contig1225.1415.1 ID=prot_S-dermatodea_contig1225.1415.1|Name=mRNA_S-dermatodea_contig1225.1415.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=326bp MEPLVRALVRGLVPPLGSHASRATLLVGGSGCNKGRRSLSSSSSDSDYELback to top mRNA from alignment at S-dermatodea_contig1225:2941..6257+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig1225.1415.1 ID=mRNA_S-dermatodea_contig1225.1415.1|Name=mRNA_S-dermatodea_contig1225.1415.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3317bp|location=Sequence derived from alignment at S-dermatodea_contig1225:2941..6257+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig1225:2941..6257+ >mRNA_S-dermatodea_contig1225.1415.1 ID=mRNA_S-dermatodea_contig1225.1415.1|Name=mRNA_S-dermatodea_contig1225.1415.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1956bp|location=Sequence derived from alignment at S-dermatodea_contig1225:2941..6257+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |