mRNA_S-dermatodea_contig12247.1414.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12247.1414.1
Unique NamemRNA_S-dermatodea_contig12247.1414.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12247.1414.1 vs. uniprot
Match: D8LH91_ECTSI (Putative Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH91_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 7.000e-66
Identity = 89/97 (91.75%), Postives = 91/97 (93.81%), Query Frame = 1
Query:    1 VRPNYGFRGWIGRGKFPVESGRYHIYVGNTCPWCHRAVLAVVLRGLSPGVTFSYMDDNPDKASRGGWAFTAEEPDPVFSCNDLREVYETCSPGFTGR 291
            VRPNYGFRGWIGRG FPVE GRYH+YVGNTCPWCHRAVLAVVLRGLSP VTFSYMDDNPDKASRGGWAFT +EPDPVF CNDLREVYETCSPGF GR
Sbjct:  118 VRPNYGFRGWIGRGAFPVEPGRYHVYVGNTCPWCHRAVLAVVLRGLSPAVTFSYMDDNPDKASRGGWAFTRDEPDPVFGCNDLREVYETCSPGFKGR 214          
BLAST of mRNA_S-dermatodea_contig12247.1414.1 vs. uniprot
Match: A0A6H5JJJ6_9PHAE (GST C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ6_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 8.190e-64
Identity = 90/97 (92.78%), Postives = 92/97 (94.85%), Query Frame = 1
Query:    1 VRPNYGFRGWIGRGKFPVESGRYHIYVGNTCPWCHRAVLAVVLRGLSPGVTFSYMDDNPDKASRGGWAFTAEEPDPVFSCNDLREVYETCSPGFTGR 291
            VRPNYGFRGWIGRG FPVESGRYH+YVGNTCPWCHRAVLAVVLRGLSP VTFSYMDDNPDKASRGGWAFT +EPDPVF CNDLREVYETCSPGF GR
Sbjct:  118 VRPNYGFRGWIGRGAFPVESGRYHVYVGNTCPWCHRAVLAVVLRGLSPAVTFSYMDDNPDKASRGGWAFTRDEPDPVFGCNDLREVYETCSPGFKGR 214          
BLAST of mRNA_S-dermatodea_contig12247.1414.1 vs. uniprot
Match: A0A835ZE16_9STRA (Glutathione S-transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE16_9STRA)

HSP 1 Score: 149 bits (377), Expect = 7.710e-42
Identity = 62/98 (63.27%), Postives = 77/98 (78.57%), Query Frame = 1
Query:    1 VRPNYGFRGWIGRGKFPVESGRYHIYVGNTCPWCHRAVLAVVLRGLSPG-VTFSYMDDNPDKASRGGWAFTAEEPDPVFSCNDLREVYETCSPGFTGR 291
            VRP+Y F+G IG  +FP E GRYH+Y+G  CPWCHR  L + LR L+ G +TFSYM D+P++ASRGGW+FT E+PDPVF C DLREVY+ CSPG+ GR
Sbjct:   61 VRPSYDFKGVIGSPQFPAEPGRYHVYLGQACPWCHRVSLTLALRSLNNGGITFSYMCDDPERASRGGWSFTEEQPDPVFGCGDLREVYQRCSPGYEGR 158          
BLAST of mRNA_S-dermatodea_contig12247.1414.1 vs. uniprot
Match: A0A7S2V351_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V351_9STRA)

HSP 1 Score: 138 bits (348), Expect = 4.400e-37
Identity = 61/102 (59.80%), Postives = 71/102 (69.61%), Query Frame = 1
Query:    4 RPNYGFRGWIGRG-KFPVESGRYHIYVGNTCPWCHRAVLAVVLRGL-----SPGVTFSYMDDNPDKASRGGWAFTAEEPDPVFSCNDLREVYETCSPGFTGR 291
            RP+Y F G I    +FPVESGRYH+Y GN CPWCHR +L   LRGL      P +T S + D+P++ASRGGWAF    PDP F C DLREVY+ CSPGFTGR
Sbjct:  120 RPSYSFNGKISESSEFPVESGRYHLYTGNACPWCHRVLLVAKLRGLLDGEKGPFLTHSILSDDPERASRGGWAFDKSRPDPAFGCRDLREVYDLCSPGFTGR 221          
BLAST of mRNA_S-dermatodea_contig12247.1414.1 vs. uniprot
Match: A0A8J9WKW6_9CHLO (Glutathione S-transferase omega-like 2 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WKW6_9CHLO)

HSP 1 Score: 132 bits (333), Expect = 5.060e-35
Identity = 53/97 (54.64%), Postives = 73/97 (75.26%), Query Frame = 1
Query:    1 VRPNYGFRGWIGRGKFPVESGRYHIYVGNTCPWCHRAVLAVVLRGLSPGVTFSYMDDNPDKASRGGWAFTAEEPDPVFSCNDLREVYETCSPGFTGR 291
             RP Y  +G IG  +FP E+ RYH+YVGN CPWCHR +LA+++RGL P ++F+   D+P++ASRGGW F  ++P+PVF+  DLREVY+  SPG+ GR
Sbjct:  105 ARPTYNLKGVIGSPEFPAETARYHLYVGNACPWCHRVLLALIIRGLLPHISFTLAVDDPERASRGGWVF--DQPEPVFNAKDLREVYDAASPGYRGR 199          
BLAST of mRNA_S-dermatodea_contig12247.1414.1 vs. uniprot
Match: A0A2P6VFB3_9CHLO (Chlorophyll a-b binding protein, chloroplastic n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VFB3_9CHLO)

HSP 1 Score: 134 bits (338), Expect = 8.410e-35
Identity = 54/96 (56.25%), Postives = 72/96 (75.00%), Query Frame = 1
Query:    4 RPNYGFRGWIGRGKFPVESGRYHIYVGNTCPWCHRAVLAVVLRGLSPGVTFSYMDDNPDKASRGGWAFTAEEPDPVFSCNDLREVYETCSPGFTGR 291
            RP Y F G +G  +FP+E+GRYH+YVGN CPWCHR +LA+ + GL+  +++S   D+P++ASRGGW F   + DPVF C DLREVY+  SPGF+GR
Sbjct:  319 RPAYAFGGRLGTPEFPLEAGRYHLYVGNPCPWCHRVLLALAVTGLAGAISYSRATDDPERASRGGWVFDGPQGDPVFGCKDLREVYDLLSPGFSGR 414          
BLAST of mRNA_S-dermatodea_contig12247.1414.1 vs. uniprot
Match: A0A7S4FIS6_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FIS6_9EUGL)

HSP 1 Score: 130 bits (328), Expect = 1.120e-34
Identity = 59/98 (60.20%), Postives = 68/98 (69.39%), Query Frame = 1
Query:    4 RPNYGFRGWIGRGKFPVESGRYHIYVGNTCPWCHRAVLAVVLRGLSPG--VTFSYMDDNPDKASRGGWAFTAEEPDPVFSCNDLREVYETCSPGFTGR 291
            RP YGF+  IG    PVESGRYH+Y+GN CPWCHR  L   LRGL     VT S M D+P KASRGGWAF+ E PDP+F   DLR+VY+  SPG+ GR
Sbjct:  232 RPKYGFQEQIGSAAHPVESGRYHVYLGNPCPWCHRVALVSALRGLEEEGHVTTSLMLDDPIKASRGGWAFSDERPDPIFEAKDLRQVYDLLSPGYKGR 329          
BLAST of mRNA_S-dermatodea_contig12247.1414.1 vs. uniprot
Match: E1Z5X8_CHLVA (GST C-terminal domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z5X8_CHLVA)

HSP 1 Score: 133 bits (335), Expect = 1.280e-34
Identity = 56/96 (58.33%), Postives = 73/96 (76.04%), Query Frame = 1
Query:    4 RPNYGFRGWIGRGKFPVESGRYHIYVGNTCPWCHRAVLAVVLRGLSPGVTFSYMDDNPDKASRGGWAFTAEEPDPVFSCNDLREVYETCSPGFTGR 291
            RP+Y F+G +G  +FP+E GRYH+YVGN CPWCHR +LA+V+ GL   ++FS   D+P++ASRGGW F  +  DPVF C DLREVY+  SPGF+GR
Sbjct:   88 RPSYSFQGRVGSPEFPLEPGRYHLYVGNACPWCHRVLLALVVSGLEGHISFSRAVDDPERASRGGWVFDGK--DPVFGCRDLREVYDLLSPGFSGR 181          
BLAST of mRNA_S-dermatodea_contig12247.1414.1 vs. uniprot
Match: A0A6V1QE16_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QE16_HETAK)

HSP 1 Score: 129 bits (324), Expect = 4.280e-34
Identity = 58/101 (57.43%), Postives = 71/101 (70.30%), Query Frame = 1
Query:    1 VRPNYGFRGWIGRG--KFPVESGRYHIYVGNTCPWCHRAVLAVVLRGLSPGVTFSYMDDNPDKASRGGWAFTAEEP--DPVFSCNDLREVYETCSPGFTGR 291
            VRP+Y F+GWI     +FP E GRYH+Y+G  CPWCHR  LAV LRGL P V+ SY+ D+P++ASRGGWAF    P  DP F   DLRE+Y+   PG+TGR
Sbjct:   34 VRPSYDFKGWISYDSKEFPGEEGRYHLYLGQPCPWCHRVSLAVALRGLGPWVSSSYLVDDPERASRGGWAFDRAGPRRDPAFGRADLRELYDLLEPGYTGR 134          
BLAST of mRNA_S-dermatodea_contig12247.1414.1 vs. uniprot
Match: I0Z7E8_COCSC (Putative glutathione S-transferase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z7E8_COCSC)

HSP 1 Score: 127 bits (320), Expect = 1.010e-33
Identity = 52/97 (53.61%), Postives = 71/97 (73.20%), Query Frame = 1
Query:    1 VRPNYGFRGWIGRGKFPVESGRYHIYVGNTCPWCHRAVLAVVLRGLSPGVTFSYMDDNPDKASRGGWAFTAEEPDPVFSCNDLREVYETCSPGFTGR 291
             RP Y  +G IG  + P ESGRYH+YVGN CPWCHR +LA+++ GL P V+++   D+P++ASRGGW F  ++ +PVF+  DLREVY+  SPG+ GR
Sbjct:   24 ARPTYNLKGVIGSPELPAESGRYHLYVGNACPWCHRVLLALIVHGLLPHVSYTMAVDDPERASRGGWVF--DQAEPVFNAKDLREVYDAASPGYRGR 118          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12247.1414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH91_ECTSI7.000e-6691.75Putative Glutathione S-transferase n=1 Tax=Ectocar... [more]
A0A6H5JJJ6_9PHAE8.190e-6492.78GST C-terminal domain-containing protein n=1 Tax=E... [more]
A0A835ZE16_9STRA7.710e-4263.27Glutathione S-transferase n=1 Tax=Tribonema minus ... [more]
A0A7S2V351_9STRA4.400e-3759.80Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A8J9WKW6_9CHLO5.060e-3554.64Glutathione S-transferase omega-like 2 n=1 Tax=Coc... [more]
A0A2P6VFB3_9CHLO8.410e-3556.25Chlorophyll a-b binding protein, chloroplastic n=1... [more]
A0A7S4FIS6_9EUGL1.120e-3460.20Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
E1Z5X8_CHLVA1.280e-3458.33GST C-terminal domain-containing protein n=1 Tax=C... [more]
A0A6V1QE16_HETAK4.280e-3457.43Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
I0Z7E8_COCSC1.010e-3353.61Putative glutathione S-transferase n=1 Tax=Coccomy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12247contigS-dermatodea_contig12247:257..1172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score134.4
Seed ortholog evalue2.8e-29
Seed eggNOG ortholog554065.XP_005850654.1
KEGG koko:K07393
EggNOG free text desc.glutathione s-transferase
EggNOG OGs34JWM@3041,37JC9@33090,COG0435@1,KOG2903@2759
EC1.8.5.7
COG Functional cat.O
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size294
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924239.4258885-CDS-S-dermatodea_contig12247:256..4281622924239.4258885-CDS-S-dermatodea_contig12247:256..428Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12247 257..428 +
1694079116.9352946-CDS-S-dermatodea_contig12247:256..4281694079116.9352946-CDS-S-dermatodea_contig12247:256..428Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12247 257..428 +
1622924239.435189-CDS-S-dermatodea_contig12247:1050..11721622924239.435189-CDS-S-dermatodea_contig12247:1050..1172Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12247 1051..1172 +
1694079116.946967-CDS-S-dermatodea_contig12247:1050..11721694079116.946967-CDS-S-dermatodea_contig12247:1050..1172Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12247 1051..1172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12247.1414.1prot_S-dermatodea_contig12247.1414.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12247 257..1172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12247.1414.1

>prot_S-dermatodea_contig12247.1414.1 ID=prot_S-dermatodea_contig12247.1414.1|Name=mRNA_S-dermatodea_contig12247.1414.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=98bp
VRPNYGFRGWIGRGKFPVESGRYHIYVGNTCPWCHRAVLAVVLRGLSPGV
TFSYMDDNPDKASRGGWAFTAEEPDPVFSCNDLREVYETCSPGFTGR*
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mRNA from alignment at S-dermatodea_contig12247:257..1172+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12247.1414.1 ID=mRNA_S-dermatodea_contig12247.1414.1|Name=mRNA_S-dermatodea_contig12247.1414.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=916bp|location=Sequence derived from alignment at S-dermatodea_contig12247:257..1172+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCAGGCCTAATTACGGGTTTCGAGGTTGGATAGGGCGAGGGAAATTTCC CGTGGAATCCGGCCGGTACCACATCTACGTCGGAAACACGTGTCCCTGGT GCCACCGCGCCGTGTTGGCGGTGGTCCTGAGGGGGCTATCCCCGGGCGTG ACATTCTCCTATATGGACGACAGTGAGTGCCGCTGCGCGCGTGCCCTGGC AGTCTGTGAAGTTGGCCTGTGCTACGCCCTGCCTTTCGAGGGTTGATCCG TGTGTGCGTGATGTGTCGATACCTCCTATAATACCCTCCGGTGTTGTTGA TATCAATTGTTTGGAAGAAGGAAGGAGAAGATCACGTAGTCAAGGTGTGT ATTGGTACACCTAGTGTGCCCGCACGCACATGTGCAGGAGGGAAGACTCG TGTGGAGGTGCGTGTGGACGAGTTGCATCTACTGCGTTCGGCGTGAGCTG TTTGTTCCGTCGAAGGGTCAGGGCAGGTCGGCAGCAGCGAAAATAGTTCG GAGAATTCTTGAAGCCTTGTCAGGGGCGTGCGCGCAAGTCCTTCGAAACA ATGCCAACGGATCAGTGTACAGCCAACAAGGAGATGAAACATGGCGGTGA CGCTTGCCCTGGGATCAATTCATTATTTGCATAAGTGGTGGAACAGGTAA CAACCAACCGTGGGCACTTTTTTCATGGGGCACTTTCTCAGCGAGTTTTG CAACTCTCTTGAGAAGATAAACGGTGGCAGCGCTGCAGCCAGTCGTTTCA CCCACCTTAGACACGAACCTTTGTATCGCTGATGCTCGGCCCAGACCCGG ACAAGGCCTCGCGGGGCGGTTGGGCATTCACTGCGGAGGAACCCGATCCA GTGTTCAGCTGCAACGATCTCCGCGAGGTGTACGAAACGTGCAGCCCGGG ATTCACTGGGAGGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12247:257..1172+

>mRNA_S-dermatodea_contig12247.1414.1 ID=mRNA_S-dermatodea_contig12247.1414.1|Name=mRNA_S-dermatodea_contig12247.1414.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at S-dermatodea_contig12247:257..1172+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCAGGCCTAATTACGGGTTTCGAGGTTGGATAGGGCGAGGGAAATTTCC
CGTGGAATCCGGCCGGTACCACATCTACGTCGGAAACACGTGTCCCTGGT
GCCACCGCGCCGTGTTGGCGGTGGTCCTGAGGGGGCTATCCCCGGGCGTG
ACATTCTCCTATATGGACGACAGTCAGGCCTAATTACGGGTTTCGAGGTT
GGATAGGGCGAGGGAAATTTCCCGTGGAATCCGGCCGGTACCACATCTAC
GTCGGAAACACGTGTCCCTGGTGCCACCGCGCCGTGTTGGCGGTGGTCCT
GAGGGGGCTATCCCCGGGCGTGACATTCTCCTATATGGACGACAACCCGG
ACAAGGCCTCGCGGGGCGGTTGGGCATTCACTGCGGAGGAACCCGATCCA
GTGTTCAGCTGCAACGATCTCCGCGAGGTGTACGAAACGTGCAGCCCGGG
ATTCACTGGGAGGTAGACCCGGACAAGGCCTCGCGGGGCGGTTGGGCATT
CACTGCGGAGGAACCCGATCCAGTGTTCAGCTGCAACGATCTCCGCGAGG
TGTACGAAACGTGCAGCCCGGGATTCACTGGGAGGTAG
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