mRNA_S-dermatodea_contig12242.1411.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12242.1411.1
Unique NamemRNA_S-dermatodea_contig12242.1411.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12242.1411.1 vs. uniprot
Match: A0A6H5L491_9PHAE (CN hydrolase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L491_9PHAE)

HSP 1 Score: 338 bits (867), Expect = 3.440e-114
Identity = 168/215 (78.14%), Postives = 183/215 (85.12%), Query Frame = 1
Query:    1 KVVVLPECWNGPYDTASFPVYAEPVPEP-GDASASL--AAEKSPSTAMLCRAAAENKVYLIGGS----------------------IMAKHRKVHLFDIDVPGGITFKESDTLSPGNAITTVETPFGVIGVGICYDIRFPELSMAMRAAGAVLVCFPGAFNMTTGPAHWELLQRARALDNQCYVVTASPARNPDSKYQAWGHSSVVDPWGVVVAT 570
            +VVVLPECWNGPYDTASFPVYAEPVP+P GD + +   +AE+SPS AMLCRAAAENKV+L+GGS                      I AKHRKVHLFDIDVPGGITFKESDTLSPG++ITTVETPFG IGVGICYD+RFPELSMAMRAAG+VL+CFPGAFNMTTGPAHWELLQRARALDNQCYVVTASPARNPDSKYQAWGHSS+VDPWG +VAT
Sbjct:  117 QVVVLPECWNGPYDTASFPVYAEPVPDPQGDETTAEMPSAEQSPSAAMLCRAAAENKVWLVGGSVPEAGKDGGVYNTCIIVEPSGRIAAKHRKVHLFDIDVPGGITFKESDTLSPGDSITTVETPFGTIGVGICYDMRFPELSMAMRAAGSVLLCFPGAFNMTTGPAHWELLQRARALDNQCYVVTASPARNPDSKYQAWGHSSIVDPWGTIVAT 331          
BLAST of mRNA_S-dermatodea_contig12242.1411.1 vs. uniprot
Match: A0A7S0DNW5_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DNW5_9EUKA)

HSP 1 Score: 281 bits (719), Expect = 4.220e-92
Identity = 139/211 (65.88%), Postives = 158/211 (74.88%), Query Frame = 1
Query:    4 VVVLPECWNGPYDTASFPVYAEPVPEPGDASASLAAEKSPSTAMLCRAAAENKVYLIGGSI----------------------MAKHRKVHLFDIDVPGGITFKESDTLSPGNAITTVETPFGVIGVGICYDIRFPELSMAMRAAGAVLVCFPGAFNMTTGPAHWELLQRARALDNQCYVVTASPARNPDSKYQAWGHSSVVDPWGVVVAT 570
            +V+LPECWN PYDT+ FPVYAEP+P    A+  ++AE SPST  L  AA +N +YLIGGSI                      +AKHRKVHLFDIDVPG ITFKESDTLSPGN +TT  TPFGV+GV ICYDIRFPELSM MR AGA L+ +PGAFNMTTGPAHWELLQRARA+DNQC+V   SPARNP S YQAWGHS++V PWG V+AT
Sbjct:  101 LVILPECWNSPYDTSCFPVYAEPIPS---AAREISAE-SPSTEFLVNAARKNNIYLIGGSIPEKDSTGKVFNTCIVINPEGDIIAKHRKVHLFDIDVPGKITFKESDTLSPGNTVTTFPTPFGVVGVAICYDIRFPELSMLMRRAGASLLVYPGAFNMTTGPAHWELLQRARAVDNQCFVAAVSPARNPSSSYQAWGHSTLVSPWGKVIAT 307          
BLAST of mRNA_S-dermatodea_contig12242.1411.1 vs. uniprot
Match: A0A7S1U3F9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3F9_9STRA)

HSP 1 Score: 262 bits (669), Expect = 2.890e-85
Identity = 132/213 (61.97%), Postives = 151/213 (70.89%), Query Frame = 1
Query:    1 KVVVLPECWNGPYDTASFPVYAEPVPEPGDASASLAAEKSPSTAMLCRAAAENKVYLIGGS-----------------------IMAKHRKVHLFDIDVPGGITFKESDTLSPGNAITTVETPFGVIGVGICYDIRFPELSMAMRAAGAVLVCFPGAFNMTTGPAHWELLQRARALDNQCYVVTASPARNPDSKYQAWGHSSVVDPWGVVVAT 570
            K+V LPECWN PY T++FP YAE VP  G A+   A   SPS A +   A EN ++L+GGS                       I+A+HRKVHLFDIDVPGGITFKESDTLSPG + T  +TP G +GVGICYDIRFPELSM MR+ GAVL+ FPGAFNMTTGP HWELL RARA+DNQC+V   SPAR P + YQAWGHSSVVDPWG VV+T
Sbjct:   62 KLVSLPECWNSPYATSAFPEYAEVVPGVGGAADPAA---SPSAAAIIAMAKENNIFLVGGSVPERDEATGKIYNTCIVVDPDGNIVARHRKVHLFDIDVPGGITFKESDTLSPGESATMFDTPMGKVGVGICYDIRFPELSMLMRSRGAVLLLFPGAFNMTTGPRHWELLARARAVDNQCFVAVTSPARVPGADYQAWGHSSVVDPWGEVVST 271          
BLAST of mRNA_S-dermatodea_contig12242.1411.1 vs. uniprot
Match: A0A7S1G4D5_9STRA (Hypothetical protein n=2 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G4D5_9STRA)

HSP 1 Score: 259 bits (661), Expect = 9.510e-84
Identity = 133/212 (62.74%), Postives = 154/212 (72.64%), Query Frame = 1
Query:    1 KVVVLPECWNGPYDTASFPVYAEPVPEPGDASASLA-AEKSPSTAMLCRAAAENKVYLIGGSI---------------------MAKHRKVHLFDIDVPGGITFKESDTLSPGNAITTVETPFGVIGVGICYDIRFPELSMAMRAAGAVLVCFPGAFNMTTGPAHWELLQRARALDNQCYVVTASPARNPDSKYQAWGHSSVVDPWGVVVAT 570
            +VVVLPEC+N PY T  FPVYAEPV +P    AS+   EK PSTAML  AA E+ VYL+GGSI                     +A+HRK+HLFDI VPGGITF+ESDTLS G A+TT +TP+   GVGICYDIRFP L+  MR AG  ++ +PGAFN TTGPAHWELLQR RA+DNQ YV TASPARNP+S YQAWGHSS+V+PWG VVAT
Sbjct:   51 QVVVLPECFNSPYATDQFPVYAEPVNDPASDGASVIDEEKQPSTAMLRDAAKEHGVYLVGGSIPERDGDRVFNTCTVWGPDGGMLARHRKMHLFDISVPGGITFRESDTLSAGAALTTFDTPYCRFGVGICYDIRFPLLAALMRKAGCKVLLYPGAFNTTTGPAHWELLQRGRAVDNQVYVATASPARNPESAYQAWGHSSLVNPWGEVVAT 262          
BLAST of mRNA_S-dermatodea_contig12242.1411.1 vs. uniprot
Match: A0A2R5GC91_9STRA (Omega-amidase NIT2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GC91_9STRA)

HSP 1 Score: 258 bits (659), Expect = 1.120e-83
Identity = 130/213 (61.03%), Postives = 155/213 (72.77%), Query Frame = 1
Query:    1 KVVVLPECWNGPYDTASFPVYAEPVPEPGDASAS-LAAEKSPSTAMLCRAAAENKVYLIGGS----------------------IMAKHRKVHLFDIDVPGGITFKESDTLSPGNAITTVETPFGVIGVGICYDIRFPELSMAMRAAGAVLVCFPGAFNMTTGPAHWELLQRARALDNQCYVVTASPARNPDSKYQAWGHSSVVDPWGVVVAT 570
            +++ LPEC+N PY T  FPVYAE +P    ASAS L AEK PSTAML  AA E+KV+L+GGS                      ++AKHRKVHLFDIDVPGG+TFKESDTLS G+ +T  +TP+  +GVGICYDIRF E +M +R  G  L+ +PGAFN TTGPAHWELLQRARA+DNQ +  TASPARNPDSKYQAWGHSS++ PWG V+AT
Sbjct:   45 QLISLPECFNSPYATDQFPVYAEEIP----ASASELDAEKHPSTAMLVEAAKESKVFLVGGSFPEKDAEGKVYNTCLVISPEGEVLAKHRKVHLFDIDVPGGVTFKESDTLSAGDQVTVFDTPYCKVGVGICYDIRFAEYAMLLRQQGCKLIVWPGAFNTTTGPAHWELLQRARAVDNQLFCATASPARNPDSKYQAWGHSSIISPWGEVLAT 253          
BLAST of mRNA_S-dermatodea_contig12242.1411.1 vs. uniprot
Match: H3G890_PHYRM (CN hydrolase domain-containing protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=H3G890_PHYRM)

HSP 1 Score: 257 bits (656), Expect = 2.540e-83
Identity = 129/212 (60.85%), Postives = 150/212 (70.75%), Query Frame = 1
Query:    1 KVVVLPECWNGPYDTASFPVYAEPVPEPGDASASLAAEKSPSTAMLCRAAAENKVYLIGGSI----------------------MAKHRKVHLFDIDVPGGITFKESDTLSPGNAITTVETPFGVIGVGICYDIRFPELSMAMRAAGAVLVCFPGAFNMTTGPAHWELLQRARALDNQCYVVTASPARNPDSKYQAWGHSSVVDPWGVVVAT 570
            +VV LPECWN PY T SFP YAE +PE     A L  +  PST  L + AA+ ++YL+GGSI                      + KHRKVHLFDIDVPG ITFKESDTLSPGN++T  +TP+G IGVGICYDIRFPELSM M+  GA ++ FPGAFN+TTGPAHWELLQRARA+DNQ YV   SPAR P+  YQAWGHS+V+ PWG VVAT
Sbjct:   41 QVVSLPECWNSPYATTSFPQYAEEIPEK---KALLNEKDHPSTFALSQLAAKLEIYLVGGSIPEKDAAGKVYNTSVIFSPEGEILGKHRKVHLFDIDVPGKITFKESDTLSPGNSMTLFDTPYGKIGVGICYDIRFPELSMLMKKQGAKVLLFPGAFNLTTGPAHWELLQRARAVDNQLYVAATSPARGPEGGYQAWGHSTVISPWGEVVAT 249          
BLAST of mRNA_S-dermatodea_contig12242.1411.1 vs. uniprot
Match: A0A2D4BS29_PYTIN (Nitrilase/cyanide hydratase and apolipo protein N-acyltransferase-like protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BS29_PYTIN)

HSP 1 Score: 258 bits (658), Expect = 3.590e-83
Identity = 129/211 (61.14%), Postives = 150/211 (71.09%), Query Frame = 1
Query:    1 KVVVLPECWNGPYDTASFPVYAEPVPEPGDASASLAAEKSPSTAMLCRAAAENKVYLIGGSI---------------------MAKHRKVHLFDIDVPGGITFKESDTLSPGNAITTVETPFGVIGVGICYDIRFPELSMAMRAAGAVLVCFPGAFNMTTGPAHWELLQRARALDNQCYVVTASPARNPDSKYQAWGHSSVVDPWGVVVAT 570
            KV+ LPECWN PY T SFP YAE +P      A L  +  PST+ L + A ++++YLIGGSI                     +AKHRKVHLFDIDVPG ITF+ESDTLS GN+IT  +TP+  IGVGICYDIRFPELSM MR  GA L+ FPGAFN+TTGPAHWELLQRARA+DNQ YV  ASPAR P+  YQAWGHS+VV PWG +V+T
Sbjct:   75 KVISLPECWNSPYATTSFPQYAEAIPTE---KAQLTPDAHPSTSALSQLAKQHQIYLIGGSIPEREGENVYNTCVIFSPEGEILAKHRKVHLFDIDVPGQITFRESDTLSAGNSITVFDTPYCKIGVGICYDIRFPELSMLMRRQGAKLLVFPGAFNLTTGPAHWELLQRARAVDNQLYVAAASPARGPEGGYQAWGHSTVVSPWGEIVST 282          
BLAST of mRNA_S-dermatodea_contig12242.1411.1 vs. uniprot
Match: A0A484E7E3_BRELC (CN hydrolase domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7E3_BRELC)

HSP 1 Score: 256 bits (655), Expect = 3.970e-83
Identity = 129/212 (60.85%), Postives = 150/212 (70.75%), Query Frame = 1
Query:    1 KVVVLPECWNGPYDTASFPVYAEPVPEPGDASASLAAEKSPSTAMLCRAAAENKVYLIGGSI----------------------MAKHRKVHLFDIDVPGGITFKESDTLSPGNAITTVETPFGVIGVGICYDIRFPELSMAMRAAGAVLVCFPGAFNMTTGPAHWELLQRARALDNQCYVVTASPARNPDSKYQAWGHSSVVDPWGVVVAT 570
            +VV LPECWN PY TASFP YAE +PE     A+L     PST  L + AA+ ++YL+GGSI                      + KHRKVHLFDIDVPG ITFKESDTLSPG+++T  +TP+  IGVGICYDIRFPELSM M+  GA ++ FPGAFN+TTGPAHWELLQRARA+DNQ YV   SPAR P+  YQAWGHSSV+ PWG VVAT
Sbjct:   41 QVVSLPECWNSPYSTASFPQYAESIPE---TKANLNENDHPSTFALSQLAAKFQIYLVGGSIPEKDTADKFYNTSVIFSPEGEILGKHRKVHLFDIDVPGKITFKESDTLSPGDSVTLFDTPYCKIGVGICYDIRFPELSMLMKKHGAKVLLFPGAFNLTTGPAHWELLQRARAVDNQLYVAATSPARGPEGGYQAWGHSSVISPWGEVVAT 249          
BLAST of mRNA_S-dermatodea_contig12242.1411.1 vs. uniprot
Match: A0A8K1CGL7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGL7_PYTOL)

HSP 1 Score: 256 bits (655), Expect = 7.250e-83
Identity = 130/211 (61.61%), Postives = 148/211 (70.14%), Query Frame = 1
Query:    1 KVVVLPECWNGPYDTASFPVYAEPVPEPGDASASLAAEKSPSTAMLCRAAAENKVYLIGGSI---------------------MAKHRKVHLFDIDVPGGITFKESDTLSPGNAITTVETPFGVIGVGICYDIRFPELSMAMRAAGAVLVCFPGAFNMTTGPAHWELLQRARALDNQCYVVTASPARNPDSKYQAWGHSSVVDPWGVVVAT 570
            KV+ LPECWN PY T SFP YAE +P   +A   L +   PST  L + A ++ +YLIGGSI                     +AKHRKVHLFDIDVPG ITFKESDTLS GN +T V+TP+  IGV ICYDIRFPELSM M+  GA ++ FPGAFN+TTGPAHWELLQRARA+DNQ YV  ASPAR P+  YQAWGHSSVV PWG VVAT
Sbjct:   64 KVISLPECWNSPYATTSFPQYAEEIPTKKEA---LNSNDHPSTFALSQLAKQHAIYLIGGSIPEKDNGKVYNTSVIFSPEGEILAKHRKVHLFDIDVPGRITFKESDTLSAGNTVTVVDTPYCKIGVAICYDIRFPELSMLMKNQGAKVIVFPGAFNLTTGPAHWELLQRARAVDNQLYVAAASPARGPEGGYQAWGHSSVVSPWGEVVAT 271          
BLAST of mRNA_S-dermatodea_contig12242.1411.1 vs. uniprot
Match: A0A3R7NN19_9STRA (CN hydrolase domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7NN19_9STRA)

HSP 1 Score: 255 bits (651), Expect = 4.000e-82
Identity = 128/213 (60.09%), Postives = 151/213 (70.89%), Query Frame = 1
Query:    1 KVVVLPECWNGPYDTASFPVYAEPVPEPGDASASLAAEKS-PSTAMLCRAAAENKVYLIGGSI----------------------MAKHRKVHLFDIDVPGGITFKESDTLSPGNAITTVETPFGVIGVGICYDIRFPELSMAMRAAGAVLVCFPGAFNMTTGPAHWELLQRARALDNQCYVVTASPARNPDSKYQAWGHSSVVDPWGVVVAT 570
            +VV LPECWN PY T SFP YAE +PE  +    L  EK  PST  L + AA+ +++L+GGSI                      + KHRKVHLFDIDVPG ITFKESDTLSPGN++T  +TP+G +GVGICYDIRFPELSM M+  GA ++ FPGAFN+TTGPAHWELLQRARA+DNQ YV   SPAR P+  YQAWGHS+V+ PWG VVAT
Sbjct:   66 QVVSLPECWNSPYATTSFPQYAEEIPEKKE----LLNEKDHPSTFALSQLAAKLQIFLVGGSIPEKDAAGKVYNTCVIYSPQGEILGKHRKVHLFDIDVPGKITFKESDTLSPGNSMTLFDTPYGKVGVGICYDIRFPELSMLMKKQGAKMLLFPGAFNLTTGPAHWELLQRARAVDNQLYVAATSPARGPEGGYQAWGHSTVISPWGEVVAT 274          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12242.1411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L491_9PHAE3.440e-11478.14CN hydrolase domain-containing protein n=2 Tax=Ect... [more]
A0A7S0DNW5_9EUKA4.220e-9265.88Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S1U3F9_9STRA2.890e-8561.97Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S1G4D5_9STRA9.510e-8462.74Hypothetical protein n=2 Tax=Bicosoecida sp. CB-20... [more]
A0A2R5GC91_9STRA1.120e-8361.03Omega-amidase NIT2 n=1 Tax=Hondaea fermentalgiana ... [more]
H3G890_PHYRM2.540e-8360.85CN hydrolase domain-containing protein n=22 Tax=Pe... [more]
A0A2D4BS29_PYTIN3.590e-8361.14Nitrilase/cyanide hydratase and apolipo protein N-... [more]
A0A484E7E3_BRELC3.970e-8360.85CN hydrolase domain-containing protein n=1 Tax=Bre... [more]
A0A8K1CGL7_PYTOL7.250e-8361.61Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3R7NN19_9STRA4.000e-8260.09CN hydrolase domain-containing protein n=2 Tax=Phy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12242contigS-dermatodea_contig12242:4897..6331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score339.3
Seed ortholog evalue1.1e-90
Seed eggNOG ortholog2880.D7FVW3
Preferred nameNIT2
KEGG rclassRC00010,RC00021,RC00053,RC00315,RC00325,RC00617,RC00959,RC02811
KEGG koko:K00797,ko:K01501,ko:K13101,ko:K13566
KEGG ReactionR00269,R00348,R00540,R01887,R01920,R02869,R03093,R03542,R05591,R07855,R08359
KEGG Pathwayko00250,ko00270,ko00330,ko00380,ko00410,ko00460,ko00480,ko00627,ko00643,ko00910,ko01100,ko01120,map00250,map00270,map00330,map00380,map00410,map00460,map00480,map00627,map00643,map00910,map01100,map01120
KEGG ModuleM00034,M00133
GOsGO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006082,GO:0006107,GO:0006108,GO:0006520,GO:0006528,GO:0006541,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0008152,GO:0008270,GO:0009064,GO:0009066,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009636,GO:0009987,GO:0012505,GO:0015630,GO:0016192,GO:0016787,GO:0016810,GO:0016811,GO:0019752,GO:0030141,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032787,GO:0032940,GO:0034641,GO:0034774,GO:0035580,GO:0036230,GO:0042119,GO:0042221,GO:0042581,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043436,GO:0043603,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044430,GO:0044433,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046872,GO:0046903,GO:0046914,GO:0050152,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0060205,GO:0070013,GO:0070820,GO:0070887,GO:0071704,GO:0097237,GO:0097708,GO:0098754,GO:0099503,GO:1901564,GO:1901605,GO:1904724,GO:1990748
EggNOG free text desc.hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
EggNOG OGsCOG0388@1,KOG0806@2759
Ec32 ortholog descriptionCarbon-nitrogen hydrolase
Ec32 orthologEc-01_002370.1
EC2.5.1.16,3.5.1.3,3.5.5.1
COG Functional cat.DU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Hectar predicted targeting categoryother localisation
Exons4
Model size570
Cds size570
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12242.1411.1prot_S-dermatodea_contig12242.1411.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12242 4897..6331 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924239.13535-CDS-S-dermatodea_contig12242:4896..49981622924239.13535-CDS-S-dermatodea_contig12242:4896..4998Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12242 4897..4998 -
1694079116.7435937-CDS-S-dermatodea_contig12242:4896..49981694079116.7435937-CDS-S-dermatodea_contig12242:4896..4998Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12242 4897..4998 -
1622924239.1490495-CDS-S-dermatodea_contig12242:5381..56011622924239.1490495-CDS-S-dermatodea_contig12242:5381..5601Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12242 5382..5601 -
1694079116.7576642-CDS-S-dermatodea_contig12242:5381..56011694079116.7576642-CDS-S-dermatodea_contig12242:5381..5601Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12242 5382..5601 -
1622924239.1618607-CDS-S-dermatodea_contig12242:6017..60821622924239.1618607-CDS-S-dermatodea_contig12242:6017..6082Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12242 6018..6082 -
1694079116.7668018-CDS-S-dermatodea_contig12242:6017..60821694079116.7668018-CDS-S-dermatodea_contig12242:6017..6082Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12242 6018..6082 -
1622924239.1744623-CDS-S-dermatodea_contig12242:6148..63311622924239.1744623-CDS-S-dermatodea_contig12242:6148..6331Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12242 6149..6331 -
1694079116.775566-CDS-S-dermatodea_contig12242:6148..63311694079116.775566-CDS-S-dermatodea_contig12242:6148..6331Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12242 6149..6331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12242.1411.1

>prot_S-dermatodea_contig12242.1411.1 ID=prot_S-dermatodea_contig12242.1411.1|Name=mRNA_S-dermatodea_contig12242.1411.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=190bp
KVVVLPECWNGPYDTASFPVYAEPVPEPGDASASLAAEKSPSTAMLCRAA
AENKVYLIGGSIMAKHRKVHLFDIDVPGGITFKESDTLSPGNAITTVETP
FGVIGVGICYDIRFPELSMAMRAAGAVLVCFPGAFNMTTGPAHWELLQRA
RALDNQCYVVTASPARNPDSKYQAWGHSSVVDPWGVVVAT
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mRNA from alignment at S-dermatodea_contig12242:4897..6331-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12242.1411.1 ID=mRNA_S-dermatodea_contig12242.1411.1|Name=mRNA_S-dermatodea_contig12242.1411.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1435bp|location=Sequence derived from alignment at S-dermatodea_contig12242:4897..6331- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGTGGTCGTTTTACCCGAGTGCTGGAACGGACCGTACGACACTGCCTC TTTTCCCGTCTACGCCGAACCGGTACCAGAACCGGGAGATGCATCAGCCT CGCTGGCCGCGGAAAAAAGCCCCTCCACGGCCATGCTCTGCCGTGCGGCC GCAGAGAATAAGGTGTACCTTATCGGAGGTTCTGTCCCGGAAGCGGGGAA GGATGGCGGCGTTTACAACACATGCGTCGTGGTGGATCCCGCAGGGAAGA TCATGGCGAAGCATCGCAAGGTGCACCTGTTCGACATCGACGTACCAGGG GGAATAACGTTCAAGTGAGACAGCTGCTGTGTCCTTCCAGCGGCCCACCG CGTTTTGTGTTTTTGTGCTCTGCGTACACTTTTATATATATGTTTGCCGT CTAGGAATATTTTGCTGTACAAGTAGATCTATTTTTATCGATGCTGCAGG TTGGGCTTAGCGCGAGCCTTCACTTGGATAATCTCAACAATTTTGGACGT ACAACACCGCAGATATTGCACGCTGCGGCTTCGTTGGATTACGGAAGGGA GAGCTGCAGCACATTCTATAGAAACGTCTCGCTCGAAAAGTGTACCACGT CAACCAGCGGCGCCTAGCTTTTCATTGCAAAAGCTGCAACAAAAAGAGCC CAGGCAATGTATGTGGGCAACCCCGAACTTGGTGCGTGCGCACTCCTCCT GGTATACATTTGTGTTCCACGCCGCTGCAGGGAGTCGGACACCCTGAGTC CTGGCAACGCCATCACCACGGTGGAAACCCCTTTCGGCGTTATCGGGGTT GGCATCTGCTACGACATTCGATTTCCGGAGCTGAGCATGGCCATGCGGGC TGCGGGGGCCGTGCTCGTCTGCTTCCCAGGCGCTTTTAACATGACCACCG GGCCGGCACACTGGGAGCTTTTGCAACGCGCTCGCGCGTTAGATAACCAG GTAGAATTCGACGCCGCCAAGGCAGTCCGTGCCGAGTAGGTGGACAATGC GTGAAAAAATTAGACAAACTTGGCGATGCGTCGCTTTCGTTTGTTCGCCC TTTACAGTCTCTCTTTGCCTTGTGGACGAAGTTGGGGTCAATACAGGCTG CTCCGTGCGCCACCTTTCTCAAGAAGCGTTCCGCATTTGATTGTATACAT GGCGCAGCATATGATAAAAGCCTCTTATCGTGCTTGCGTACAGCGTGGTG TCCTGCCCAACCCACCTTGTTTGGCGCGGAACAAGTTCATAACATTGCTG CACCTGGTGGTAATACACGCTTCACTGGCCCAAGACCTGATAATCCCAAC CTGCATTTCCCCCCCCGCCTCTCTTGCCGACAGTGCTATGTGGTGACGGC GTCACCCGCGCGAAATCCCGATTCCAAGTACCAGGCATGGGGTCACAGCT CGGTAGTCGATCCGTGGGGAGTAGTAGTCGCTACG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12242:4897..6331-

>mRNA_S-dermatodea_contig12242.1411.1 ID=mRNA_S-dermatodea_contig12242.1411.1|Name=mRNA_S-dermatodea_contig12242.1411.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at S-dermatodea_contig12242:4897..6331- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGTGGTCGTTTTACCCGAGTGCTGGAACGGACCGTACGACACTGCCTC
TTTTCCCGTCTACGCCGAACCGGTACCAGAACCGGGAGATGCATCAGCCT
CGCTGGCCGCGGAAAAAAGCCCCTCCACGGCCATGCTCTGCCGTGCGGCC
GCAGAGAATAAGGTGTACCTTATCGGAGGTTCTAAGGTGGTCGTTTTACC
CGAGTGCTGGAACGGACCGTACGACACTGCCTCTTTTCCCGTCTACGCCG
AACCGGTACCAGAACCGGGAGATGCATCAGCCTCGCTGGCCGCGGAAAAA
AGCCCCTCCACGGCCATGCTCTGCCGTGCGGCCGCAGAGAATAAGGTGTA
CCTTATCGGAGGTTCTATCATGGCGAAGCATCGCAAGGTGCACCTGTTCG
ACATCGACGTACCAGGGGGAATAACGTTCAAATCATGGCGAAGCATCGCA
AGGTGCACCTGTTCGACATCGACGTACCAGGGGGAATAACGTTCAAGGAG
TCGGACACCCTGAGTCCTGGCAACGCCATCACCACGGTGGAAACCCCTTT
CGGCGTTATCGGGGTTGGCATCTGCTACGACATTCGATTTCCGGAGCTGA
GCATGGCCATGCGGGCTGCGGGGGCCGTGCTCGTCTGCTTCCCAGGCGCT
TTTAACATGACCACCGGGCCGGCACACTGGGAGCTTTTGCAACGCGCTCG
CGCGTTAGATAACCAGGGAGTCGGACACCCTGAGTCCTGGCAACGCCATC
ACCACGGTGGAAACCCCTTTCGGCGTTATCGGGGTTGGCATCTGCTACGA
CATTCGATTTCCGGAGCTGAGCATGGCCATGCGGGCTGCGGGGGCCGTGC
TCGTCTGCTTCCCAGGCGCTTTTAACATGACCACCGGGCCGGCACACTGG
GAGCTTTTGCAACGCGCTCGCGCGTTAGATAACCAGTGCTATGTGGTGAC
GGCGTCACCCGCGCGAAATCCCGATTCCAAGTACCAGGCATGGGGTCACA
GCTCGGTAGTCGATCCGTGGGGAGTAGTAGTCGCTACGTGCTATGTGGTG
ACGGCGTCACCCGCGCGAAATCCCGATTCCAAGTACCAGGCATGGGGTCA
CAGCTCGGTAGTCGATCCGTGGGGAGTAGTAGTCGCTACG
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