mRNA_S-dermatodea_contig12241.1410.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12241.1410.1
Unique NamemRNA_S-dermatodea_contig12241.1410.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12241.1410.1 vs. uniprot
Match: A0A6H5LBS4_9PHAE (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LBS4_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 3.390e-10
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = -1 
Query:  312 CYKCGIAKELVPELR--GKAGAGAPPSQYADQIKELHKFKAKTAKEITAES 458
            CYKCG+  +L+PELR  G++G  +  S YADQIKELHK KAKTA E+ AES
Sbjct:  148 CYKCGVVADLLPELRPKGESGGASSRSIYADQIKELHKLKAKTADEVAAES 198
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12241.1410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LBS4_9PHAE3.390e-1062.75UBC core domain-containing protein n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12241contigS-dermatodea_contig12241:5270..5727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size459
Cds size456
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924239.0997896-CDS-S-dermatodea_contig12241:5269..57251622924239.0997896-CDS-S-dermatodea_contig12241:5269..5725Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12241 5270..5725 +
1694079116.725625-CDS-S-dermatodea_contig12241:5269..57251694079116.725625-CDS-S-dermatodea_contig12241:5269..5725Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12241 5270..5725 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924239.109249-UTR-S-dermatodea_contig12241:5725..57271622924239.109249-UTR-S-dermatodea_contig12241:5725..5727Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12241 5726..5727 +
1694079116.7340264-UTR-S-dermatodea_contig12241:5725..57271694079116.7340264-UTR-S-dermatodea_contig12241:5725..5727Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12241 5726..5727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12241.1410.1prot_S-dermatodea_contig12241.1410.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12241 5270..5725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12241.1410.1

>prot_S-dermatodea_contig12241.1410.1 ID=prot_S-dermatodea_contig12241.1410.1|Name=mRNA_S-dermatodea_contig12241.1410.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=152bp
TAPRAAAPPDDASPPPLRKDDSPPPRPPPPTEEPDPPTTSPAGSDDSVTA
ACETAPLSPLVSPIGQSAVGSVVARAASPGVSPLRSVPSADESSSAAAAA
AASADSAVISFAVFALNLCSSLIWSAYWLGGAPAPAFPRSSGTSSFAMPH
L*
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mRNA from alignment at S-dermatodea_contig12241:5270..5727+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12241.1410.1 ID=mRNA_S-dermatodea_contig12241.1410.1|Name=mRNA_S-dermatodea_contig12241.1410.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=458bp|location=Sequence derived from alignment at S-dermatodea_contig12241:5270..5727+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACCGCACCGCGAGCAGCAGCGCCACCAGACGATGCATCACCACCACCACT
ACGAAAGGATGATTCGCCTCCGCCCCGCCCACCACCACCTACGGAAGAAC
CTGATCCGCCTACAACTTCCCCGGCGGGATCTGACGATTCCGTAACCGCC
GCCTGTGAAACGGCACCACTTTCTCCGCTGGTCTCGCCGATCGGGCAATC
CGCGGTCGGATCGGTAGTCGCTCGCGCGGCATCGCCGGGCGTCTCACCGC
TTCGGTCGGTGCCTTCGGCGGATGAATCATCATCTGCAGCAGCAGCAGCA
GCAGCATCAGCAGATTCGGCGGTAATTTCCTTTGCGGTTTTTGCCTTGAA
CTTGTGCAGCTCCTTGATCTGGTCGGCGTACTGGCTGGGGGGGGCGCCCG
CGCCGGCCTTCCCGCGGAGCTCCGGGACGAGCTCCTTCGCGATGCCGCAC
TTGTAGCA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12241:5270..5727+

>mRNA_S-dermatodea_contig12241.1410.1 ID=mRNA_S-dermatodea_contig12241.1410.1|Name=mRNA_S-dermatodea_contig12241.1410.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at S-dermatodea_contig12241:5270..5727+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACCGCACCGCGAGCAGCAGCGCCACCAGACGATGCATCACCACCACCACT
ACGAAAGGATGATTCGCCTCCGCCCCGCCCACCACCACCTACGGAAGAAC
CTGATCCGCCTACAACTTCCCCGGCGGGATCTGACGATTCCGTAACCGCC
GCCTGTGAAACGGCACCACTTTCTCCGCTGGTCTCGCCGATCGGGCAATC
CGCGGTCGGATCGGTAGTCGCTCGCGCGGCATCGCCGGGCGTCTCACCGC
TTCGGTCGGTGCCTTCGGCGGATGAATCATCATCTGCAGCAGCAGCAGCA
GCAGCATCAGCAGATTCGGCGGTAATTTCCTTTGCGGTTTTTGCCTTGAA
CTTGTGCAGCTCCTTGATCTGGTCGGCGTACTGGCTGGGGGGGGCGCCCG
CGCCGGCCTTCCCGCGGAGCTCCGGGACGAGCTCCTTCGCGATGCCGCAC
TTGTAGACCGCACCGCGAGCAGCAGCGCCACCAGACGATGCATCACCACC
ACCACTACGAAAGGATGATTCGCCTCCGCCCCGCCCACCACCACCTACGG
AAGAACCTGATCCGCCTACAACTTCCCCGGCGGGATCTGACGATTCCGTA
ACCGCCGCCTGTGAAACGGCACCACTTTCTCCGCTGGTCTCGCCGATCGG
GCAATCCGCGGTCGGATCGGTAGTCGCTCGCGCGGCATCGCCGGGCGTCT
CACCGCTTCGGTCGGTGCCTTCGGCGGATGAATCATCATCTGCAGCAGCA
GCAGCAGCAGCATCAGCAGATTCGGCGGTAATTTCCTTTGCGGTTTTTGC
CTTGAACTTGTGCAGCTCCTTGATCTGGTCGGCGTACTGGCTGGGGGGGG
CGCCCGCGCCGGCCTTCCCGCGGAGCTCCGGGACGAGCTCCTTCGCGATG
CCGCACTTGTAG
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