mRNA_S-dermatodea_contig12241.1409.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12241.1409.1
Unique NamemRNA_S-dermatodea_contig12241.1409.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12241.1409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12241contigS-dermatodea_contig12241:801..1443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size643
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12241.1409.1prot_S-dermatodea_contig12241.1409.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12241 969..1394 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924239.0453334-UTR-S-dermatodea_contig12241:800..9681622924239.0453334-UTR-S-dermatodea_contig12241:800..968Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12241 801..968 +
1694079116.6752458-UTR-S-dermatodea_contig12241:800..9681694079116.6752458-UTR-S-dermatodea_contig12241:800..968Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12241 801..968 +
1622924239.0675774-UTR-S-dermatodea_contig12241:1394..14431622924239.0675774-UTR-S-dermatodea_contig12241:1394..1443Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12241 1395..1443 +
1694079116.7144878-UTR-S-dermatodea_contig12241:1394..14431694079116.7144878-UTR-S-dermatodea_contig12241:1394..1443Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12241 1395..1443 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924239.056607-CDS-S-dermatodea_contig12241:968..13941622924239.056607-CDS-S-dermatodea_contig12241:968..1394Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12241 969..1394 +
1694079116.703374-CDS-S-dermatodea_contig12241:968..13941694079116.703374-CDS-S-dermatodea_contig12241:968..1394Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12241 969..1394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12241.1409.1

>prot_S-dermatodea_contig12241.1409.1 ID=prot_S-dermatodea_contig12241.1409.1|Name=mRNA_S-dermatodea_contig12241.1409.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=142bp
MVCIPYTTVWYKYTIYYGMVCHLLWYNMSYRKTAGMVGTIEYKYYILWYG
IPYTIGMWWVLRACLVQPVCVCVCVGRRKTPGSVTCPPTLHLTFSLRSRG
GRRMLSIVGDREIKAFSAVMESSFSFLFFLRGYVDGVAWRR*
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mRNA from alignment at S-dermatodea_contig12241:801..1443+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12241.1409.1 ID=mRNA_S-dermatodea_contig12241.1409.1|Name=mRNA_S-dermatodea_contig12241.1409.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=643bp|location=Sequence derived from alignment at S-dermatodea_contig12241:801..1443+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTCGCTAGGGAAAGGGCGCGCGTGCGCGGTGGGGGGGGCGGAGGGGGGA
CTTGGATGAGGCCGGTCTGTCATGTCGTACGCGAGTCATACACGCGACAC
GCACACCGTGATGGTGCAGGACACTCTTGTTGCGGGTCGAGGAGCGCACT
AAGCTTGTGCCATATACTATGGTTTGTATACCATACACTACGGTATGGTA
CAAGTATACCATATACTATGGTATGGTATGCCATCTACTGTGGTATAATA
TGTCATACCGTAAAACTGCAGGTATGGTGGGTACTATCGAATACAAGTAC
TATATACTATGGTATGGTATACCATATACCATTGGTATGTGGTGGGTGCT
TCGCGCGTGCTTGGTACAACCCGTGTGTGTGTGTGTGTGTGTTGGGAGGA
GGAAGACTCCTGGGTCGGTGACCTGTCCCCCCACCTTGCACTTAACGTTC
AGTTTGCGATCAAGAGGCGGTCGCCGCATGTTGAGTATCGTCGGCGATCG
CGAAATTAAAGCTTTTTCTGCGGTGATGGAATCGTCTTTTTCTTTTCTTT
TTTTTTTGCGAGGGTATGTAGACGGCGTGGCGTGGAGGCGTTGAGTCTGC
AATCCATTTATTCATTTTTTTTTTTTTTTTTCCTAAAATCTTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12241:801..1443+

>mRNA_S-dermatodea_contig12241.1409.1 ID=mRNA_S-dermatodea_contig12241.1409.1|Name=mRNA_S-dermatodea_contig12241.1409.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at S-dermatodea_contig12241:801..1443+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTTTGTATACCATACACTACGGTATGGTACAAGTATACCATATACTA
TGGTATGGTATGCCATCTACTGTGGTATAATATGTCATACCGTAAAACTG
CAGGTATGGTGGGTACTATCGAATACAAGTACTATATACTATGGTATGGT
ATACCATATACCATTGGTATGTGGTGGGTGCTTCGCGCGTGCTTGGTACA
ACCCGTGTGTGTGTGTGTGTGTGTTGGGAGGAGGAAGACTCCTGGGTCGG
TGACCTGTCCCCCCACCTTGCACTTAACGTTCAGTTTGCGATCAAGAGGC
GGTCGCCGCATGTTGAGTATCGTCGGCGATCGCGAAATTAAAGCTTTTTC
TGCGGTGATGGAATCGTCTTTTTCTTTTCTTTTTTTTTTGCGAGGGTATG
TAGACGGCGTGGCGTGGAGGCGTTGAATGGTTTGTATACCATACACTACG
GTATGGTACAAGTATACCATATACTATGGTATGGTATGCCATCTACTGTG
GTATAATATGTCATACCGTAAAACTGCAGGTATGGTGGGTACTATCGAAT
ACAAGTACTATATACTATGGTATGGTATACCATATACCATTGGTATGTGG
TGGGTGCTTCGCGCGTGCTTGGTACAACCCGTGTGTGTGTGTGTGTGTGT
TGGGAGGAGGAAGACTCCTGGGTCGGTGACCTGTCCCCCCACCTTGCACT
TAACGTTCAGTTTGCGATCAAGAGGCGGTCGCCGCATGTTGAGTATCGTC
GGCGATCGCGAAATTAAAGCTTTTTCTGCGGTGATGGAATCGTCTTTTTC
TTTTCTTTTTTTTTTGCGAGGGTATGTAGACGGCGTGGCGTGGAGGCGTT
GA
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