mRNA_S-dermatodea_contig1224.1407.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1224.1407.1
Unique NamemRNA_S-dermatodea_contig1224.1407.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1224.1407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1224contigS-dermatodea_contig1224:5764..6358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size595
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1224.1407.1prot_S-dermatodea_contig1224.1407.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1224 5767..6105 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924238.8228037-UTR-S-dermatodea_contig1224:5763..57661622924238.8228037-UTR-S-dermatodea_contig1224:5763..5766Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1224 5764..5766 +
1694079116.5062265-UTR-S-dermatodea_contig1224:5763..57661694079116.5062265-UTR-S-dermatodea_contig1224:5763..5766Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1224 5764..5766 +
1622924238.8515651-UTR-S-dermatodea_contig1224:6105..63581622924238.8515651-UTR-S-dermatodea_contig1224:6105..6358Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1224 6106..6358 +
1694079116.525056-UTR-S-dermatodea_contig1224:6105..63581694079116.525056-UTR-S-dermatodea_contig1224:6105..6358Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1224 6106..6358 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924238.8366387-CDS-S-dermatodea_contig1224:5766..61051622924238.8366387-CDS-S-dermatodea_contig1224:5766..6105Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1224 5767..6105 +
1694079116.5160728-CDS-S-dermatodea_contig1224:5766..61051694079116.5160728-CDS-S-dermatodea_contig1224:5766..6105Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1224 5767..6105 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1224.1407.1

>prot_S-dermatodea_contig1224.1407.1 ID=prot_S-dermatodea_contig1224.1407.1|Name=mRNA_S-dermatodea_contig1224.1407.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=113bp
MLNACRIHTYVDHASQQCRDGVICRVFASQASFYKDDTRCWSSSLRLQRQ
TVCHGLIGHTDQSHVAHSVGVAILQVPQRDFDHRANAKASPAHNTHDRVC
VIHSDYNLLMEY*
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mRNA from alignment at S-dermatodea_contig1224:5764..6358+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1224.1407.1 ID=mRNA_S-dermatodea_contig1224.1407.1|Name=mRNA_S-dermatodea_contig1224.1407.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=595bp|location=Sequence derived from alignment at S-dermatodea_contig1224:5764..6358+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTATGTTAAACGCATGTCGTATCCATACATATGTAGACCACGCGTCCCA
GCAATGCCGGGACGGAGTGATATGCCGGGTTTTCGCCAGTCAGGCTTCGT
TTTACAAGGATGATACCCGCTGCTGGTCATCATCCTTGCGTTTGCAACGC
CAAACGGTATGCCATGGGTTGATAGGACATACGGACCAATCACATGTTGC
ACATTCAGTAGGCGTGGCTATACTCCAAGTACCGCAAAGGGACTTTGATC
ACCGTGCGAATGCAAAAGCATCGCCCGCACACAACACACACGACCGTGTA
TGTGTGATACACTCGGACTATAATCTGCTCATGGAGTACTAGTCATAAAT
TAATGGTTGCTCTAGAGCGTTCCAACAATCCAATGTTCAGCAGGCGTCCT
ATATGATGTGGTCGTTTCGCCCCTCTGGGGAGATACAAGACTCTTCGACC
GAGGTCTCCGAGTTCACAGGACATACTGCATGAACCACCCCATGCCCTAT
AAATAGCAGTTTCACAGCTCGATGCAACAAGAGCCCACCCTACCTCGACC
AACCCCACCCATGAACCTTGAAGGCAGGGGGGTTGTAGGTCTCAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1224:5764..6358+

>mRNA_S-dermatodea_contig1224.1407.1 ID=mRNA_S-dermatodea_contig1224.1407.1|Name=mRNA_S-dermatodea_contig1224.1407.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at S-dermatodea_contig1224:5764..6358+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTAAACGCATGTCGTATCCATACATATGTAGACCACGCGTCCCAGCA
ATGCCGGGACGGAGTGATATGCCGGGTTTTCGCCAGTCAGGCTTCGTTTT
ACAAGGATGATACCCGCTGCTGGTCATCATCCTTGCGTTTGCAACGCCAA
ACGGTATGCCATGGGTTGATAGGACATACGGACCAATCACATGTTGCACA
TTCAGTAGGCGTGGCTATACTCCAAGTACCGCAAAGGGACTTTGATCACC
GTGCGAATGCAAAAGCATCGCCCGCACACAACACACACGACCGTGTATGT
GTGATACACTCGGACTATAATCTGCTCATGGAGTACTAGATGTTAAACGC
ATGTCGTATCCATACATATGTAGACCACGCGTCCCAGCAATGCCGGGACG
GAGTGATATGCCGGGTTTTCGCCAGTCAGGCTTCGTTTTACAAGGATGAT
ACCCGCTGCTGGTCATCATCCTTGCGTTTGCAACGCCAAACGGTATGCCA
TGGGTTGATAGGACATACGGACCAATCACATGTTGCACATTCAGTAGGCG
TGGCTATACTCCAAGTACCGCAAAGGGACTTTGATCACCGTGCGAATGCA
AAAGCATCGCCCGCACACAACACACACGACCGTGTATGTGTGATACACTC
GGACTATAATCTGCTCATGGAGTACTAG
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