mRNA_S-dermatodea_contig1224.1406.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1224.1406.1
Unique NamemRNA_S-dermatodea_contig1224.1406.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1224.1406.1 vs. uniprot
Match: A0A6H5JHV3_9PHAE (GT1 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHV3_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 9.240e-15
Identity = 37/53 (69.81%), Postives = 42/53 (79.25%), Query Frame = 3 
Query:  120 ISGHLTWAGAHAARTHGLKNATHVAWPLDMLEECGFLPPRSLSSLASNTMRAL 278
            IS HLTWAGA+AAR  G+K+A HVAWPL MLE+CGFLP RSLSS+     RAL
Sbjct:   97 ISDHLTWAGANAARIVGVKHACHVAWPLFMLEQCGFLPARSLSSVLGAAARAL 149
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1224.1406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JHV3_9PHAE9.240e-1569.81GT1 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1224contigS-dermatodea_contig1224:4582..5501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size280
Cds size174
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1224.1406.1prot_S-dermatodea_contig1224.1406.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1224 4582..5396 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924238.7687294-CDS-S-dermatodea_contig1224:4581..46841622924238.7687294-CDS-S-dermatodea_contig1224:4581..4684Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1224 4582..4684 +
1694079116.4725084-CDS-S-dermatodea_contig1224:4581..46841694079116.4725084-CDS-S-dermatodea_contig1224:4581..4684Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1224 4582..4684 +
1622924238.7788782-CDS-S-dermatodea_contig1224:5325..53961622924238.7788782-CDS-S-dermatodea_contig1224:5325..5396Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1224 5326..5396 +
1694079116.4817843-CDS-S-dermatodea_contig1224:5325..53961694079116.4817843-CDS-S-dermatodea_contig1224:5325..5396Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1224 5326..5396 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924238.7891598-UTR-S-dermatodea_contig1224:5396..55011622924238.7891598-UTR-S-dermatodea_contig1224:5396..5501Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1224 5397..5501 +
1694079116.4954915-UTR-S-dermatodea_contig1224:5396..55011694079116.4954915-UTR-S-dermatodea_contig1224:5396..5501Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1224 5397..5501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1224.1406.1

>prot_S-dermatodea_contig1224.1406.1 ID=prot_S-dermatodea_contig1224.1406.1|Name=mRNA_S-dermatodea_contig1224.1406.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=58bp
AEGFKAAPGVVRGGEDDSAAGGIGQRKVSIPGHGVMQRRRSVATLPGRGH
TPRGHTA*
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mRNA from alignment at S-dermatodea_contig1224:4582..5501+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1224.1406.1 ID=mRNA_S-dermatodea_contig1224.1406.1|Name=mRNA_S-dermatodea_contig1224.1406.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=920bp|location=Sequence derived from alignment at S-dermatodea_contig1224:4582..5501+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGAAGGATTCAAAGCAGCACCCGGTGTGGTACGCGGAGGAGAAGATGA
CTCCGCCGCTGGTGGCATTGGTCAACGGAAAGTATCGATCCCCGGACATG
GTGGTGAGTTTCAGTTGTGGCTTGAGCACCCGGGTTGGCTTCTGTAGCCC
CTAGCCTAACGGAGTTACTTATGTTGTTACATTGTTAGAAATACGAGGAA
AAACGCGGTGAGTCGTTAGCTCGTCTTCCAGGATAGCGAGTAGCAAAACG
CACGAATTCGATGTCCGGCGCTAACACGCGTGCTTTAAACATGCACAGGA
ATCGTCGGCGTAGAATATGGAGTACGTTGCGATATCGTCGGAGTACGTCG
CGGACCTTTTGCACGAAGTGCTTGCATGGCTGCGTCCGCCATCGTGTTTC
CAATCGCCCTCACTTTAGTGTGCAGCTTCCGACAGCCTCGTGCTTTATCC
TACACCAATCCGGTACCGCGCATCACAGTTGACACCCCCCCCCCCCCCGG
CCTGAGAATGCGATAATTGCTGTAGACAGGGCAGGAATGTCGGTTTTGGC
CCACCTTTGGCTAAGTAGAAACTAACGATTAGCCATTGGCGATCGGTTCT
GTGAGAAAAATGCTCCGCCCCCCCGCGGTCGCGTGGTTAATCGCCTACCA
GCTGCATGCAAACCTTGGGTACGACCCCCCCTCCCCTTCCGGAAGCCCAT
TCGATGCCTGAGCTTCCACCCCCGCCAACCTCCCGGCTATCCAGTGATGC
AACGACGAAGATCAGTGGCCACCTTACCTGGGCGGGGGCACACGCCGCGA
GGACACACGGCCTGAAAAACGCGACCCACGTCGCCTGGCCGCTCGACATG
CTGGAGGAATGCGGCTTCCTACCACCGCGCTCCCTCTCGAGCCTCGCGTC
CAACACGATGCGCGCTCTCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig1224:4582..5501+

>mRNA_S-dermatodea_contig1224.1406.1 ID=mRNA_S-dermatodea_contig1224.1406.1|Name=mRNA_S-dermatodea_contig1224.1406.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at S-dermatodea_contig1224:4582..5501+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGAAGGATTCAAAGCAGCACCCGGTGTGGTACGCGGAGGAGAAGATGA
CTCCGCCGCTGGTGGCATTGGTCAACGGAAAGTATCGATCCCCGGACATG
GTGGCCGAAGGATTCAAAGCAGCACCCGGTGTGGTACGCGGAGGAGAAGA
TGACTCCGCCGCTGGTGGCATTGGTCAACGGAAAGTATCGATCCCCGGAC
ATGGTGTGATGCAACGACGAAGATCAGTGGCCACCTTACCTGGGCGGGGG
CACACGCCGCGAGGACACACGGCCTGATGATGCAACGACGAAGATCAGTG
GCCACCTTACCTGGGCGGGGGCACACGCCGCGAGGACACACGGCCTGA
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