mRNA_S-dermatodea_contig12239.1405.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12239.1405.1
Unique NamemRNA_S-dermatodea_contig12239.1405.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12239.1405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12239contigS-dermatodea_contig12239:4937..5676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size555
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12239.1405.1prot_S-dermatodea_contig12239.1405.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12239 5071..5370 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924238.7098238-UTR-S-dermatodea_contig12239:4936..50701622924238.7098238-UTR-S-dermatodea_contig12239:4936..5070Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12239 4937..5070 -
1694079116.4257722-UTR-S-dermatodea_contig12239:4936..50701694079116.4257722-UTR-S-dermatodea_contig12239:4936..5070Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12239 4937..5070 -
1622924238.7272804-UTR-S-dermatodea_contig12239:5370..54431622924238.7272804-UTR-S-dermatodea_contig12239:5370..5443Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12239 5371..5443 -
1694079116.4438741-UTR-S-dermatodea_contig12239:5370..54431694079116.4438741-UTR-S-dermatodea_contig12239:5370..5443Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12239 5371..5443 -
1622924238.735729-UTR-S-dermatodea_contig12239:5628..56761622924238.735729-UTR-S-dermatodea_contig12239:5628..5676Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12239 5629..5676 -
1694079116.4608052-UTR-S-dermatodea_contig12239:5628..56761694079116.4608052-UTR-S-dermatodea_contig12239:5628..5676Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12239 5629..5676 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924238.7191637-CDS-S-dermatodea_contig12239:5070..53701622924238.7191637-CDS-S-dermatodea_contig12239:5070..5370Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12239 5071..5370 -
1694079116.4342394-CDS-S-dermatodea_contig12239:5070..53701694079116.4342394-CDS-S-dermatodea_contig12239:5070..5370Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12239 5071..5370 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12239.1405.1

>prot_S-dermatodea_contig12239.1405.1 ID=prot_S-dermatodea_contig12239.1405.1|Name=mRNA_S-dermatodea_contig12239.1405.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=100bp
MAGSKRFQQIGEALFSSRKNWFKRLPKLSSRASKMLLYRAPPVLLSEWPR
FVLYDPAKGRNPFDSFDTKNANARASPTWLQITRHLRCTATTGRRTPRF*
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mRNA from alignment at S-dermatodea_contig12239:4937..5676-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12239.1405.1 ID=mRNA_S-dermatodea_contig12239.1405.1|Name=mRNA_S-dermatodea_contig12239.1405.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=740bp|location=Sequence derived from alignment at S-dermatodea_contig12239:4937..5676- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGAGCCGTTTAAGACCGCCGAGAAGGCCATCCGTGGCTTGGAAGCAGGC
AAGCTTACGCCTGTATCCATGGCGATCTGGGCAGTATTGCTAGCGTACAT
TTTGGGCTAGAACAGACAGTATTCAGCATCCTGCAGCCTAGGAAAGAGTT
AAGGTAGTTGGTGCTGTGCGGTTGTGCTACTATTTAGCGGATCCCCTTGG
TCCGGGTCTATTGGCCGTGTATTCCAAACGCAGGCGGTCTCTAGGAGCTT
CTGTGCAAGACATAGCCCTTGATTGGCGTTGTCCGGCTAGCAGAGCCGGG
CTTGAGATGGCGGGGAGCAAGCGTTTTCAGCAGATCGGAGAAGCACTATT
CAGCAGCCGCAAAAACTGGTTTAAGCGACTACCGAAGCTTTCCTCACGGG
CGTCGAAGATGCTACTATATCGAGCACCGCCCGTGCTCCTTTCTGAATGG
CCTCGATTTGTTCTGTACGATCCTGCCAAGGGAAGAAATCCATTCGACAG
CTTCGATACGAAAAATGCGAATGCGAGAGCTAGCCCAACTTGGCTTCAAA
TCACGAGACACCTCCGCTGCACGGCCACAACTGGACGGCGCACCCCGCGC
TTCTAACATCACCACCGCCAACCCTTCCGTTGGGGTGTACGTTCGTCGCC
GCGAGTCTTGGCAGATCCAGCGCCGTGGTTGGAGCTCGAGTTCTGGGACT
CCTTAGCAGAGGCGTTCATGCGGTACTACGGCAAGTCCAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig12239:4937..5676-

>mRNA_S-dermatodea_contig12239.1405.1 ID=mRNA_S-dermatodea_contig12239.1405.1|Name=mRNA_S-dermatodea_contig12239.1405.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at S-dermatodea_contig12239:4937..5676- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGGGGAGCAAGCGTTTTCAGCAGATCGGAGAAGCACTATTCAGCAG
CCGCAAAAACTGGTTTAAGCGACTACCGAAGCTTTCCTCACGGGCGTCGA
AGATGCTACTATATCGAGCACCGCCCGTGCTCCTTTCTGAATGGCCTCGA
TTTGTTCTGTACGATCCTGCCAAGGGAAGAAATCCATTCGACAGCTTCGA
TACGAAAAATGCGAATGCGAGAGCTAGCCCAACTTGGCTTCAAATCACGA
GACACCTCCGCTGCACGGCCACAACTGGACGGCGCACCCCGCGCTTCTAA
ATGGCGGGGAGCAAGCGTTTTCAGCAGATCGGAGAAGCACTATTCAGCAG
CCGCAAAAACTGGTTTAAGCGACTACCGAAGCTTTCCTCACGGGCGTCGA
AGATGCTACTATATCGAGCACCGCCCGTGCTCCTTTCTGAATGGCCTCGA
TTTGTTCTGTACGATCCTGCCAAGGGAAGAAATCCATTCGACAGCTTCGA
TACGAAAAATGCGAATGCGAGAGCTAGCCCAACTTGGCTTCAAATCACGA
GACACCTCCGCTGCACGGCCACAACTGGACGGCGCACCCCGCGCTTCTAA
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