mRNA_S-dermatodea_contig12239.1404.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12239.1404.1
Unique NamemRNA_S-dermatodea_contig12239.1404.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12239.1404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12239contigS-dermatodea_contig12239:3825..4136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size314
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924238.670482-CDS-S-dermatodea_contig12239:3824..41361622924238.670482-CDS-S-dermatodea_contig12239:3824..4136Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12239 3825..4136 +
1694079116.4178104-CDS-S-dermatodea_contig12239:3824..41361694079116.4178104-CDS-S-dermatodea_contig12239:3824..4136Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12239 3825..4136 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12239.1404.1prot_S-dermatodea_contig12239.1404.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12239 3825..4136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12239.1404.1

>prot_S-dermatodea_contig12239.1404.1 ID=prot_S-dermatodea_contig12239.1404.1|Name=mRNA_S-dermatodea_contig12239.1404.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=104bp
GSNRHVGGGGALGQHTIRTKERDRGNPTCPSCAHRADGSPFDTEASMKHF
KSTTSTAATAAASSAYKQQDLPCARQKSRCSASTLFSKDTVFLMMPSRSA
LPR*
back to top

mRNA from alignment at S-dermatodea_contig12239:3825..4136+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12239.1404.1 ID=mRNA_S-dermatodea_contig12239.1404.1|Name=mRNA_S-dermatodea_contig12239.1404.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=312bp|location=Sequence derived from alignment at S-dermatodea_contig12239:3825..4136+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGAGCAATCGCCACGTGGGGGGGGGGGGGGCGTTGGGTCAACACACAAT
ACGAACTAAAGAAAGGGACCGCGGAAACCCAACATGCCCATCTTGCGCTC
ATCGCGCTGATGGCTCGCCCTTTGACACGGAAGCGTCTATGAAACACTTC
AAGAGCACCACCAGCACCGCCGCTACCGCCGCCGCCAGCAGCGCATACAA
GCAGCAGGACCTACCCTGCGCAAGACAGAAGAGCCGTTGCAGCGCCAGCA
CCCTCTTCTCGAAGGACACCGTTTTCCTGATGATGCCCAGCCGATCCGCC
CTGCCAAGGTGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12239:3825..4136+

>mRNA_S-dermatodea_contig12239.1404.1 ID=mRNA_S-dermatodea_contig12239.1404.1|Name=mRNA_S-dermatodea_contig12239.1404.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at S-dermatodea_contig12239:3825..4136+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGAGCAATCGCCACGTGGGGGGGGGGGGGGCGTTGGGTCAACACACAAT
ACGAACTAAAGAAAGGGACCGCGGAAACCCAACATGCCCATCTTGCGCTC
ATCGCGCTGATGGCTCGCCCTTTGACACGGAAGCGTCTATGAAACACTTC
AAGAGCACCACCAGCACCGCCGCTACCGCCGCCGCCAGCAGCGCATACAA
GCAGCAGGACCTACCCTGCGCAAGACAGAAGAGCCGTTGCAGCGCCAGCA
CCCTCTTCTCGAAGGACACCGTTTTCCTGATGATGCCCAGCCGATCCGCC
CTGCCAAGGTGAGGGAGCAATCGCCACGTGGGGGGGGGGGGGGCGTTGGG
TCAACACACAATACGAACTAAAGAAAGGGACCGCGGAAACCCAACATGCC
CATCTTGCGCTCATCGCGCTGATGGCTCGCCCTTTGACACGGAAGCGTCT
ATGAAACACTTCAAGAGCACCACCAGCACCGCCGCTACCGCCGCCGCCAG
CAGCGCATACAAGCAGCAGGACCTACCCTGCGCAAGACAGAAGAGCCGTT
GCAGCGCCAGCACCCTCTTCTCGAAGGACACCGTTTTCCTGATGATGCCC
AGCCGATCCGCCCTGCCAAGGTGA
back to top