mRNA_S-dermatodea_contig12238.1403.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12238.1403.1
Unique NamemRNA_S-dermatodea_contig12238.1403.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12238.1403.1 vs. uniprot
Match: A0A6H5JKS8_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKS8_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 4.680e-17
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:   61 GSVRRVIWHVLRRLETIFRVAWMVNLLLFLRQGKYATPVDRVIRMRMV 204
            G  RRV WHVL RLET+FR+AWMVNLLLFL+ GKYATPVDR++RMRMV
Sbjct:  235 GRARRVAWHVLGRLETLFRLAWMVNLLLFLKSGKYATPVDRLVRMRMV 282
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BLAST of mRNA_S-dermatodea_contig12238.1403.1 vs. uniprot
Match: W7TYI4_9STRA (Peroxin-2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYI4_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.530e-5
Identity = 23/58 (39.66%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   37 RTAGKTRQGSVRRVIWHVLRRLETIFRVAWMVNLLLFLRQGKYATPVDRVIRMRMVRG 210
            R++G    G  +R  +  L R E++FR+AW++N L+FLR G Y + + R++ MR+V G
Sbjct:  244 RSSGTRGGGQWKRRAYRALTRAESLFRLAWLINFLVFLRVGSYPSLLQRLVGMRLVYG 301
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BLAST of mRNA_S-dermatodea_contig12238.1403.1 vs. uniprot
Match: A0A4D9D9T6_9STRA (Pex2_Pex12 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9T6_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 4.720e-5
Identity = 23/58 (39.66%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   37 RTAGKTRQGSVRRVIWHVLRRLETIFRVAWMVNLLLFLRQGKYATPVDRVIRMRMVRG 210
            R++G    G  +R  +  L R E++FR+AW++N L+FLR G Y + + R++ MR+V G
Sbjct:  249 RSSGTQGGGQWKRRAYRALTRAESLFRLAWLLNFLVFLRVGSYPSLLQRLVGMRLVYG 306
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BLAST of mRNA_S-dermatodea_contig12238.1403.1 vs. uniprot
Match: A0A1D2A1X3_AUXPR (Pex2_Pex12 domain-containing protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A1X3_AUXPR)

HSP 1 Score: 48.5 bits (114), Expect = 8.790e-5
Identity = 26/63 (41.27%), Postives = 36/63 (57.14%), Query Frame = 1 
Query:   16 ARLFPPSRTAGKTRQGSVRRVIWHVLRRLETIFRVAWMVNLLLFLRQGKYATPVDRVIRMRMV 204
            AR    + + G    G  R   W V+RR ET +R+A +VN + FLR GKY T ++R+I  R V
Sbjct:  170 ARAGHAAASGGSDGDGGWRATAWQVMRRAETAYRLAALVNAIAFLRAGKYRTLLERLIGARPV 232
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12238.1403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JKS8_9PHAE4.680e-1779.17RING-type domain-containing protein n=2 Tax=Ectoca... [more]
W7TYI4_9STRA2.530e-539.66Peroxin-2 n=1 Tax=Nannochloropsis gaditana TaxID=7... [more]
A0A4D9D9T6_9STRA4.720e-539.66Pex2_Pex12 domain-containing protein n=1 Tax=Nanno... [more]
A0A1D2A1X3_AUXPR8.790e-541.27Pex2_Pex12 domain-containing protein n=2 Tax=Auxen... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12238contigS-dermatodea_contig12238:6503..6718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue3.8e-15
Seed eggNOG ortholog2880.D8LL84
Preferred namePEX2
KEGG koko:K06664
KEGG TC3.A.20.1
KEGG Pathwayko04146,map04146
GOsGO:0000003,GO:0000038,GO:0000122,GO:0000151,GO:0000152,GO:0000209,GO:0000280,GO:0000428,GO:0000910,GO:0001764,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0005829,GO:0005911,GO:0006082,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006635,GO:0006694,GO:0006699,GO:0006807,GO:0006810,GO:0006886,GO:0006928,GO:0006996,GO:0007031,GO:0007049,GO:0007112,GO:0007140,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007285,GO:0007286,GO:0007399,GO:0008023,GO:0008104,GO:0008150,GO:0008152,GO:0008202,GO:0008206,GO:0008270,GO:0008285,GO:0008610,GO:0009056,GO:0009057,GO:0009058,GO:0009062,GO:0009314,GO:0009416,GO:0009506,GO:0009628,GO:0009639,GO:0009640,GO:0009791,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010498,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015919,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016049,GO:0016053,GO:0016054,GO:0016477,GO:0016558,GO:0016567,GO:0016591,GO:0016593,GO:0016740,GO:0017038,GO:0019216,GO:0019218,GO:0019219,GO:0019222,GO:0019395,GO:0019538,GO:0019752,GO:0019787,GO:0019941,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0030054,GO:0030154,GO:0030163,GO:0030258,GO:0030880,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031400,GO:0031647,GO:0031648,GO:0031903,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032787,GO:0032991,GO:0033036,GO:0033206,GO:0033233,GO:0033234,GO:0033365,GO:0033768,GO:0034440,GO:0034613,GO:0036211,GO:0040007,GO:0040011,GO:0042127,GO:0042579,GO:0042592,GO:0042632,GO:0042886,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043574,GO:0043632,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044743,GO:0045184,GO:0045540,GO:0045892,GO:0045934,GO:0046394,GO:0046395,GO:0046872,GO:0046890,GO:0046907,GO:0046914,GO:0048137,GO:0048145,GO:0048147,GO:0048232,GO:0048285,GO:0048468,GO:0048515,GO:0048519,GO:0048523,GO:0048588,GO:0048589,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0048878,GO:0050678,GO:0050680,GO:0050789,GO:0050794,GO:0050810,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051301,GO:0051321,GO:0051603,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0055029,GO:0055044,GO:0055085,GO:0055088,GO:0055092,GO:0055114,GO:0060255,GO:0061630,GO:0061640,GO:0061659,GO:0061695,GO:0062012,GO:0065002,GO:0065007,GO:0065008,GO:0070013,GO:0070647,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072329,GO:0072330,GO:0072594,GO:0072662,GO:0072663,GO:0080090,GO:0090181,GO:0098588,GO:0098805,GO:0106118,GO:0140013,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901615,GO:1901617,GO:1902494,GO:1902679,GO:1902930,GO:1903046,GO:1903320,GO:1903321,GO:1903506,GO:1903507,GO:1990234,GO:1990351,GO:1990415,GO:1990429,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.protein import into peroxisome matrix
EggNOG OGsKOG2879@1,KOG2879@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04121
Hectar predicted targeting categorymitochondrion
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924238.635348-CDS-S-dermatodea_contig12238:6502..67181622924238.635348-CDS-S-dermatodea_contig12238:6502..6718Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12238 6503..6718 +
1694079116.4072044-CDS-S-dermatodea_contig12238:6502..67181694079116.4072044-CDS-S-dermatodea_contig12238:6502..6718Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12238 6503..6718 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12238.1403.1prot_S-dermatodea_contig12238.1403.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12238 6503..6718 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12238.1403.1

>prot_S-dermatodea_contig12238.1403.1 ID=prot_S-dermatodea_contig12238.1403.1|Name=mRNA_S-dermatodea_contig12238.1403.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=72bp
PIRVLARLFPPSRTAGKTRQGSVRRVIWHVLRRLETIFRVAWMVNLLLFL
RQGKYATPVDRVIRMRMVRGGR
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mRNA from alignment at S-dermatodea_contig12238:6503..6718+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12238.1403.1 ID=mRNA_S-dermatodea_contig12238.1403.1|Name=mRNA_S-dermatodea_contig12238.1403.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at S-dermatodea_contig12238:6503..6718+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTATTCGCGTGCTGGCTCGTCTTTTCCCCCCTTCTCGGACGGCGGGGAA
AACTCGACAGGGGAGCGTGCGCCGCGTGATCTGGCACGTCCTGCGCCGGC
TGGAGACTATATTTCGCGTCGCCTGGATGGTGAACCTCCTGCTCTTCCTG
AGGCAGGGGAAGTACGCCACACCGGTGGACCGGGTCATTCGAATGCGGAT
GGTGAGGGGAGGGAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12238:6503..6718+

>mRNA_S-dermatodea_contig12238.1403.1 ID=mRNA_S-dermatodea_contig12238.1403.1|Name=mRNA_S-dermatodea_contig12238.1403.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at S-dermatodea_contig12238:6503..6718+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTATTCGCGTGCTGGCTCGTCTTTTCCCCCCTTCTCGGACGGCGGGGAA
AACTCGACAGGGGAGCGTGCGCCGCGTGATCTGGCACGTCCTGCGCCGGC
TGGAGACTATATTTCGCGTCGCCTGGATGGTGAACCTCCTGCTCTTCCTG
AGGCAGGGGAAGTACGCCACACCGGTGGACCGGGTCATTCGAATGCGGAT
GGTGAGGGGAGGGAGGCCTATTCGCGTGCTGGCTCGTCTTTTCCCCCCTT
CTCGGACGGCGGGGAAAACTCGACAGGGGAGCGTGCGCCGCGTGATCTGG
CACGTCCTGCGCCGGCTGGAGACTATATTTCGCGTCGCCTGGATGGTGAA
CCTCCTGCTCTTCCTGAGGCAGGGGAAGTACGCCACACCGGTGGACCGGG
TCATTCGAATGCGGATGGTGAGGGGAGGGAGG
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