mRNA_S-dermatodea_contig12233.1399.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12233.1399.1
Unique NamemRNA_S-dermatodea_contig12233.1399.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12233.1399.1 vs. uniprot
Match: A0A6H5JK27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK27_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 2.610e-44
Identity = 120/323 (37.15%), Postives = 172/323 (53.25%), Query Frame = 1 
Query:  178 LIAQFG-ATPAVFSLADAGVRLSVGPNCLKKEQVAGPVTVMTEKVYLVECRAQSYQVSVVVDCQPSGSKFDAP---LELDFRVGEPLDEEDEDSDPVGNRGTDLDDKQRQEYMSGLRDTYK--VLLRDESGDAWDVLGEEKTTVLYEHGMFFIRASIDHFSQGCLAKTIQPESAYHEETATWPFRPGKRELEFVNTTDRPLIFLVLPTSWSNKATHAVAMGLAWEGLEA-HVAISRAIEQSILAEATHPQVLQVPCTKRKGDPRAGQICPYATCRLAKSTGTEARVALITADSKTVAVWDYRIVRHKTRLAILPGQFSEGMIP 1125
            L+ QF   T   +  ADAGVRL V P+CLK+ +VAGP++V+T+K ++VE     + +S ++DCQPSG+ F  P   L LDF  GE      ED D  G   TD D +  +E ++ LR TYK  V  R E G  W++  +       +   +F+R  I HFS  CL   +   S+  +       R  KR+LEFVN TD+ ++F VLPT +S  AT ++  G+   G+    V + R  E  I++ AT P    VP  K+ G P+AG +CP  T  + K    EARV + T+D +    W   +   +T+L +LP  FS G  P
Sbjct:  781 LVDQFDWTTDETYFDADAGVRLVVRPDCLKEGEVAGPISVVTDKRHIVERGDGLFLLSTMIDCQPSGTIFQDPQNPLVLDFVFGE------EDEDSQGTDDTDEDTEDGKEDLAILRATYKARVFWRMEEGQPWELHEDGAWDFDDQLKKYFLRVKIRHFSDVCLGTELSLHSSC-DSCVVSRGRTKKRQLEFVNATDKKIVFKVLPTGYSTSATKSINAGVEVPGIVGVTVGLDRESETVIMSAATAPSTFSVPFKKKAGTPKAGDVCPAHTYNIPKKMRGEARVYMYTSDRQEP--WLNEVHPERTQLVVLPPMFSGGPTP 1094
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12233.1399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JK27_9PHAE2.610e-4437.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12233contigS-dermatodea_contig12233:4970..7244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1707
Cds size1017
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12233.1399.1prot_S-dermatodea_contig12233.1399.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12233 5264..6848 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924238.3790715-UTR-S-dermatodea_contig12233:4969..52631622924238.3790715-UTR-S-dermatodea_contig12233:4969..5263Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12233 4970..5263 +
1694079116.188784-UTR-S-dermatodea_contig12233:4969..52631694079116.188784-UTR-S-dermatodea_contig12233:4969..5263Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12233 4970..5263 +
1622924238.4051993-UTR-S-dermatodea_contig12233:6848..72441622924238.4051993-UTR-S-dermatodea_contig12233:6848..7244Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12233 6849..7244 +
1694079116.2190766-UTR-S-dermatodea_contig12233:6848..72441694079116.2190766-UTR-S-dermatodea_contig12233:6848..7244Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12233 6849..7244 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924238.3877583-CDS-S-dermatodea_contig12233:5263..54971622924238.3877583-CDS-S-dermatodea_contig12233:5263..5497Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12233 5264..5497 +
1694079116.196938-CDS-S-dermatodea_contig12233:5263..54971694079116.196938-CDS-S-dermatodea_contig12233:5263..5497Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12233 5264..5497 +
1622924238.3962665-CDS-S-dermatodea_contig12233:6065..68481622924238.3962665-CDS-S-dermatodea_contig12233:6065..6848Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12233 6066..6848 +
1694079116.205856-CDS-S-dermatodea_contig12233:6065..68481694079116.205856-CDS-S-dermatodea_contig12233:6065..6848Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12233 6066..6848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12233.1399.1

>prot_S-dermatodea_contig12233.1399.1 ID=prot_S-dermatodea_contig12233.1399.1|Name=mRNA_S-dermatodea_contig12233.1399.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=339bp
MTEKVYLVECRAQSYQVSVVVDCQPSGSKFDAPLELDFRVGEPLDEEDED
SDPVGNRGTDLDDKQRQEYMSGLRDTYKVLLRDESGDAWDVLGEEKTTVL
YEHGMFFIRASIDHFSQGCLAKTIQPESAYHEETATWPFRPGKRELEFVN
TTDRPLIFLVLPTSWSNKATHAVAMGLAWEGLEAHVAISRAIEQSILAEA
THPQVLQVPCTKRKGDPRAGQICPYATCRLAKSTGTEARVALITADSKTV
AVWDYRIVRHKTRLAILPGQFSEGMIPILGEHKRDELAKGPLCLMDVALM
ATVKGLRLSNTQAPVSTISSGTSNAEAGGRLTTAVDNS*
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mRNA from alignment at S-dermatodea_contig12233:4970..7244+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12233.1399.1 ID=mRNA_S-dermatodea_contig12233.1399.1|Name=mRNA_S-dermatodea_contig12233.1399.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2275bp|location=Sequence derived from alignment at S-dermatodea_contig12233:4970..7244+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGCAAAGGCTGGAGAACGAGAACCCGCGCAAGCCCGACTCGGACATTAG
CGTGCCGGCTGGGATCTCAAGTCAGCGAGAGCTCGGCCGGCAAGTGACAG
TCGAGAAGGCAGCTGTTACAGACATCCCGTGGACCCTCCCCGCGGATGGC
GATACGCCAGAGGAACCCGGTATCGAACTGATTGCTCAGTTTGGCGCCAC
CCCAGCCGTATTCTCGTTGGCAGATGCCGGTGTGAGGCTGAGCGTGGGGC
CTAATTGTCTCAAAAAGGAACAAGTAGCCGGGCCGGTTACGGTCATGACC
GAAAAGGTCTACCTTGTCGAATGTCGGGCCCAGAGTTATCAGGTATCCGT
GGTGGTGGATTGCCAGCCGTCGGGCAGCAAGTTTGACGCTCCCTTGGAGC
TCGATTTCCGCGTCGGAGAGCCTTTGGACGAGGAGGATGAAGACAGCGAC
CCGGTCGGCAACCGAGGGACTGATCTAGATGACAAGCAGCGTCAAGAGTA
CATGAGCGGCCTCCGGGACACTTACAAGGTGATCTGATTAGAGCGACATG
TTTTACGTGAGAGCTGAACTGCATGCCTTAGTTTTCCCTGTTCTGGCGTT
ACGGCTGGCACCGATGCACGGACAACGCTGCACGCTTGCAGCATGAGCGC
AAGCAATACCCCAAAACGTCCCCCCCGAAACCTGTAGGCTCTGCCACGGC
GTGGCCGGATCTAGTGCACTTGTCCTCGTGTACTATCATCCCCCGAGGAA
GAGCCCATGTGATGCATTAACTAATTCCCGCAACGGGTTCTTCTTTGGTT
GTGTGAACGCCTTCGTTGCGAGAATCAGCCCGTGTTTGAGATATATATGT
ATATATGAGGTGTACTGGTATCAAGGCGTGTTGAAGGTGTCGTTTGGAAT
GGGGGCAGTTTGCAAACCATAACCATGCTGCCTCGACGCGGAATTGTGGG
GGTTGTGTTTCAGATGTCGGATTGGTTTTGCGGAAAACACGCCGTGTTGA
GCTAGATTTGACGGAAGCTTTGTAACACCGCACGGGTTGGATATGCAGTC
GGATGGTGATACGATTCCCGTTGTAATTCCGTCACTCACACATCAGGTCC
TACTGCGAGACGAGAGCGGCGACGCCTGGGATGTCCTCGGAGAAGAAAAG
ACAACCGTTTTGTACGAGCACGGAATGTTCTTCATCCGGGCAAGCATTGA
CCACTTCAGCCAAGGCTGTCTCGCGAAAACCATTCAACCCGAATCTGCTT
ACCACGAAGAGACGGCGACGTGGCCGTTTCGTCCGGGGAAGAGGGAGCTA
GAATTTGTGAATACGACGGACAGGCCGCTAATATTTCTCGTTCTGCCGAC
GTCTTGGTCTAACAAGGCCACACACGCGGTTGCTATGGGCCTGGCGTGGG
AAGGGTTAGAGGCACACGTGGCGATATCGAGAGCGATTGAACAATCCATT
CTTGCCGAGGCAACGCACCCCCAGGTCTTGCAAGTTCCGTGCACCAAGCG
AAAAGGAGACCCGAGAGCAGGCCAGATCTGTCCCTATGCGACATGCCGCC
TAGCGAAAAGCACGGGGACCGAGGCGAGGGTTGCGTTGATCACGGCCGAC
AGCAAGACTGTTGCGGTGTGGGACTACCGCATTGTCAGACACAAGACAAG
ATTGGCGATACTTCCGGGACAGTTTTCCGAAGGGATGATCCCTATCCTGG
GGGAGCACAAACGCGACGAGCTCGCGAAAGGCCCTCTGTGCCTCATGGAC
GTGGCTTTGATGGCCACGGTCAAGGGTCTACGGCTGTCCAACACGCAGGC
TCCGGTTTCGACTATTTCGAGTGGCACAAGCAATGCCGAGGCGGGAGGGC
GGCTCACTACAGCAGTAGACAACAGTTGATTCGCGAATGTGAAAATACTT
CTAATAGACTAGAAGTCTGGTGGGCTAGTATTGGATCATGTATCCATGCT
TGAGGTGGAATGCATTGTATAGCGGGGTGTAGGGAGGGAAGGCAGTAGCA
TTGCTGTGTGCCATCTTTAGACTGGTTATGGAAACATGTTATCTTGTGAT
TTATGCCGAGTTGGATGCCCACGGTGGGACCTTCTCTATCTGTAGCGTCG
GCCGGTTGTGTAAGCTCTGTTAGTGAGTGCGTGCACCATGTCTTCCTACG
CTTGGGTTGCCAGGTTAGGTTTGGGGGCTGCTTAACCCTTTTGGGACTAA
AACTGTTTTCGGGTAACTGTTTGCTAGTGTTATATATCCTTTTGTTTTGG
GACTAAGGCTGTTTTCGGGTAACCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12233:4970..7244+

>mRNA_S-dermatodea_contig12233.1399.1 ID=mRNA_S-dermatodea_contig12233.1399.1|Name=mRNA_S-dermatodea_contig12233.1399.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2034bp|location=Sequence derived from alignment at S-dermatodea_contig12233:4970..7244+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACCGAAAAGGTCTACCTTGTCGAATGTCGGGCCCAGAGTTATCAGGT
ATCCGTGGTGGTGGATTGCCAGCCGTCGGGCAGCAAGTTTGACGCTCCCT
TGGAGCTCGATTTCCGCGTCGGAGAGCCTTTGGACGAGGAGGATGAAGAC
AGCGACCCGGTCGGCAACCGAGGGACTGATCTAGATGACAAGCAGCGTCA
AGAGTACATGAGCGGCCTCCGGGACACTTACAAGATGACCGAAAAGGTCT
ACCTTGTCGAATGTCGGGCCCAGAGTTATCAGGTATCCGTGGTGGTGGAT
TGCCAGCCGTCGGGCAGCAAGTTTGACGCTCCCTTGGAGCTCGATTTCCG
CGTCGGAGAGCCTTTGGACGAGGAGGATGAAGACAGCGACCCGGTCGGCA
ACCGAGGGACTGATCTAGATGACAAGCAGCGTCAAGAGTACATGAGCGGC
CTCCGGGACACTTACAAGGTCCTACTGCGAGACGAGAGCGGCGACGCCTG
GGATGTCCTCGGAGAAGAAAAGACAACCGTTTTGTACGAGCACGGAATGT
TCTTCATCCGGGCAAGCATTGACCACTTCAGCCAAGGCTGTCTCGCGAAA
ACCATTCAACCCGAATCTGCTTACCACGAAGAGACGGCGACGTGGCCGTT
TCGTCCGGGGAAGAGGGAGCTAGAATTTGTGAATACGACGGACAGGCCGC
TAATATTTCTCGTTCTGCCGACGTCTTGGTCTAACAAGGCCACACACGCG
GTTGCTATGGGCCTGGCGTGGGAAGGGTTAGAGGCACACGTGGCGATATC
GAGAGCGATTGAACAATCCATTCTTGCCGAGGCAACGCACCCCCAGGTCT
TGCAAGTTCCGTGCACCAAGCGAAAAGGAGACCCGAGAGCAGGCCAGATC
TGTCCCTATGCGACATGCCGCCTAGCGAAAAGCACGGGGACCGAGGCGAG
GGTTGCGTTGATCACGGCCGACAGCAAGACTGTTGCGGTGTGGGACTACC
GCATTGTCAGACACAAGACAAGATTGGCGATACTTCCGGGACAGTTTTCC
GAAGGGATGATCCCTATCCTGGGGGAGCACAAACGCGACGAGCTCGCGAA
AGGCCCTCTGTGCCTCATGGACGTGGCTTTGATGGCCACGGTCAAGGGTC
TACGGCTGTCCAACACGCAGGCTCCGGTTTCGACTATTTCGAGTGGCACA
AGCAATGCCGAGGCGGGAGGGCGGCTCACTACAGCAGTAGACAACAGTTG
AGTCCTACTGCGAGACGAGAGCGGCGACGCCTGGGATGTCCTCGGAGAAG
AAAAGACAACCGTTTTGTACGAGCACGGAATGTTCTTCATCCGGGCAAGC
ATTGACCACTTCAGCCAAGGCTGTCTCGCGAAAACCATTCAACCCGAATC
TGCTTACCACGAAGAGACGGCGACGTGGCCGTTTCGTCCGGGGAAGAGGG
AGCTAGAATTTGTGAATACGACGGACAGGCCGCTAATATTTCTCGTTCTG
CCGACGTCTTGGTCTAACAAGGCCACACACGCGGTTGCTATGGGCCTGGC
GTGGGAAGGGTTAGAGGCACACGTGGCGATATCGAGAGCGATTGAACAAT
CCATTCTTGCCGAGGCAACGCACCCCCAGGTCTTGCAAGTTCCGTGCACC
AAGCGAAAAGGAGACCCGAGAGCAGGCCAGATCTGTCCCTATGCGACATG
CCGCCTAGCGAAAAGCACGGGGACCGAGGCGAGGGTTGCGTTGATCACGG
CCGACAGCAAGACTGTTGCGGTGTGGGACTACCGCATTGTCAGACACAAG
ACAAGATTGGCGATACTTCCGGGACAGTTTTCCGAAGGGATGATCCCTAT
CCTGGGGGAGCACAAACGCGACGAGCTCGCGAAAGGCCCTCTGTGCCTCA
TGGACGTGGCTTTGATGGCCACGGTCAAGGGTCTACGGCTGTCCAACACG
CAGGCTCCGGTTTCGACTATTTCGAGTGGCACAAGCAATGCCGAGGCGGG
AGGGCGGCTCACTACAGCAGTAGACAACAGTTGA
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