mRNA_S-dermatodea_contig12233.1398.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12233.1398.1
Unique NamemRNA_S-dermatodea_contig12233.1398.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig12233.1398.1 vs. uniprot
Match: D7G251_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G251_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 7.440e-38
Identity = 59/99 (59.60%), Postives = 79/99 (79.80%), Query Frame = 2 
Query:    2 MLGDGLEVLKHHPGRSKNFVSRIVRFLPDYGGSIVWDKLLPRPGSRRSKIPIKYIKEIELDQRVVWISAGDDRVGFETPKAEDADVIYRGICILVWEYH 298
            ML DGL+VLKHH   SK   SR++RF+PDYGG++VWDK L +PG++ S++P+  I ++EL+ R+VWISAGD+RVGFET K EDAD++Y+ ICILV   H
Sbjct:   83 MLADGLKVLKHHRRSSKKAASRVIRFVPDYGGALVWDKPLRQPGAKASRVPLDAITQVELEARIVWISAGDERVGFETSKTEDADLMYQAICILVDRCH 181
[Close]
BLAST of mRNA_S-dermatodea_contig12233.1398.1 vs. uniprot
Match: A0A6H5JPJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ4_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 6.630e-22
Identity = 48/97 (49.48%), Postives = 67/97 (69.07%), Query Frame = 2 
Query:    2 MLGDGLEVLKHHPGRSKNFVSRIVRFLPDY--GGSIVWDKLLPRPGSRRSKIPIKYIKEIELDQRVVWISAGDDRVGFETPKAEDADVIYRGICILV 286
            ML DGL+VLK      K   SR++RF+PDY  GGS+VW K +   G++ S++P+    ++EL+  +VWISA D+RVG ET K EDA+++Y  ICILV
Sbjct:  243 MLADGLKVLKQLRS-CKAACSRVIRFVPDYLFGGSLVWHKPVNPQGAKNSRVPLDVTTQVELEACIVWISASDERVGCETSKLEDAEIMYEAICILV 338
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12233.1398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G251_ECTSI7.440e-3859.60Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JPJ4_9PHAE6.630e-2249.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12233contigS-dermatodea_contig12233:3108..4120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size366
Cds size363
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12233.1398.1prot_S-dermatodea_contig12233.1398.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12233 3109..4120 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924238.3114715-UTR-S-dermatodea_contig12233:3107..31081622924238.3114715-UTR-S-dermatodea_contig12233:3107..3108Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12233 3108..3108 +
1694079116.1477616-UTR-S-dermatodea_contig12233:3107..31081694079116.1477616-UTR-S-dermatodea_contig12233:3107..3108Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12233 3108..3108 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924238.3232512-CDS-S-dermatodea_contig12233:3108..32911622924238.3232512-CDS-S-dermatodea_contig12233:3108..3291Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12233 3109..3291 +
1694079116.157719-CDS-S-dermatodea_contig12233:3108..32911694079116.157719-CDS-S-dermatodea_contig12233:3108..3291Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12233 3109..3291 +
1622924238.3320324-CDS-S-dermatodea_contig12233:3536..36521622924238.3320324-CDS-S-dermatodea_contig12233:3536..3652Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12233 3537..3652 +
1694079116.17011-CDS-S-dermatodea_contig12233:3536..36521694079116.17011-CDS-S-dermatodea_contig12233:3536..3652Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12233 3537..3652 +
1622924238.3407035-CDS-S-dermatodea_contig12233:4056..41201622924238.3407035-CDS-S-dermatodea_contig12233:4056..4120Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12233 4057..4120 +
1694079116.1804965-CDS-S-dermatodea_contig12233:4056..41201694079116.1804965-CDS-S-dermatodea_contig12233:4056..4120Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12233 4057..4120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12233.1398.1

>prot_S-dermatodea_contig12233.1398.1 ID=prot_S-dermatodea_contig12233.1398.1|Name=mRNA_S-dermatodea_contig12233.1398.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=121bp
MLGDGLEVLKHHPGRSKNFVSRIVRFLPDYGGSIVWDKLLPRPGSRRSKI
PIKYIKEIELDQRVVWISAGDDRVGFETPKAEDADVIYRGICILVWEYHR
GEVVNEWSAEENEFFATLVGQ
back to top

mRNA from alignment at S-dermatodea_contig12233:3108..4120+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12233.1398.1 ID=mRNA_S-dermatodea_contig12233.1398.1|Name=mRNA_S-dermatodea_contig12233.1398.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1013bp|location=Sequence derived from alignment at S-dermatodea_contig12233:3108..4120+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GATGCTGGGGGACGGCCTGGAGGTATTGAAGCACCACCCCGGTAGGTCCA
AGAATTTCGTGAGCCGCATCGTCCGGTTTTTGCCGGACTACGGAGGAAGT
ATCGTGTGGGACAAGCTCCTTCCCCGGCCCGGTTCCAGGCGTAGCAAGAT
CCCGATCAAATATATCAAAGAGATCGAGCTTGATGTGAGAGAACATCGCC
TTGTGATCTAGGTAACGCATCCCGCAAATCTGCGATAGAGACGGGCTTAC
CTTTTGTAGTCAAGACTGTGCCGGCAGTCCCTCTCTCGCTCATCGGTTTT
GTGAAAATGTACCAATGTTCACTATGGAACCGTTACACCTCTCTCAACAC
TCGTGTACCATTACTGATCGTTTTTCACATCTTGTTTTGACCGGTATGAT
TCGTGTTCCTCCCTTATGATTCCATCCAGCAACGCGTGGTGTGGATTTCG
GCGGGAGATGATCGCGTTGGATTTGAGACGCCTAAGGCGGAAGACGCCGA
CGTCATTTATCGGGGGATCTGCATCCTGGTCTGGGAGTACCACAGGTGAT
TAACCGCGAAACGCTGTTTAATAGTGTCTTAAATAGCTCTGAATAAGCCG
TGCCGAAGGCGAGCCATGTGCAGCAGCAGCAGCAGCAGCCAGCAGGTGAG
TTATGTCCTTCAAAAGGGGACCAAAACGACGGTACGTTGGCTGATACCTG
TCTCGTAAGTTGACGACGGGCTGGTGTAGGACTCTTCGGCGTCGTTCCGC
CTCTTGTTGCGTCATCAAAGGGTGAACGTGCTTCATTTGGTTGCGAAAAA
AGAGCGCAAGACGGATAGAGCTTATCGAAACCGCATAACCACCCGTTCAA
GAGAGCAGAAGGCCATAATGTCGCTCTGCGGCCGGAACGTCACATCCCCT
CGCTGCACCTCTCGTGATGAGAGACACAACGTCCCGATAATGTGCGCAGG
GGTGAAGTGGTGAATGAGTGGAGCGCGGAAGAGAACGAATTTTTCGCGAC
GCTCGTTGGTCAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12233:3108..4120+

>mRNA_S-dermatodea_contig12233.1398.1 ID=mRNA_S-dermatodea_contig12233.1398.1|Name=mRNA_S-dermatodea_contig12233.1398.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at S-dermatodea_contig12233:3108..4120+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTGGGGGACGGCCTGGAGGTATTGAAGCACCACCCCGGTAGGTCCAA
GAATTTCGTGAGCCGCATCGTCCGGTTTTTGCCGGACTACGGAGGAAGTA
TCGTGTGGGACAAGCTCCTTCCCCGGCCCGGTTCCAGGCGTAGCAAGATC
CCGATCAAATATATCAAAGAGATCGAGCTTGATATGCTGGGGGACGGCCT
GGAGGTATTGAAGCACCACCCCGGTAGGTCCAAGAATTTCGTGAGCCGCA
TCGTCCGGTTTTTGCCGGACTACGGAGGAAGTATCGTGTGGGACAAGCTC
CTTCCCCGGCCCGGTTCCAGGCGTAGCAAGATCCCGATCAAATATATCAA
AGAGATCGAGCTTGATCAACGCGTGGTGTGGATTTCGGCGGGAGATGATC
GCGTTGGATTTGAGACGCCTAAGGCGGAAGACGCCGACGTCATTTATCGG
GGGATCTGCATCCTGGTCTGGGAGTACCACAGCAACGCGTGGTGTGGATT
TCGGCGGGAGATGATCGCGTTGGATTTGAGACGCCTAAGGCGGAAGACGC
CGACGTCATTTATCGGGGGATCTGCATCCTGGTCTGGGAGTACCACAGGG
GTGAAGTGGTGAATGAGTGGAGCGCGGAAGAGAACGAATTTTTCGCGACG
CTCGTTGGTCAGGGGTGAAGTGGTGAATGAGTGGAGCGCGGAAGAGAACG
AATTTTTCGCGACGCTCGTTGGTCAG
back to top