mRNA_S-dermatodea_contig12232.1397.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12232.1397.1
Unique NamemRNA_S-dermatodea_contig12232.1397.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12232.1397.1 vs. uniprot
Match: A0A6H5K090_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K090_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 6.900e-22
Identity = 48/68 (70.59%), Postives = 56/68 (82.35%), Query Frame = 1
Query:    4 RAIDVYARVDEDLQVKTEAGAFVTIGFWALMVVLVVGEIQAFLRTPPPIERVVVDSTMGHRLRINADV 207
            + +DVYARVDEDLQV+TE GA VTIGFW LMVVL VGE+QA+ +   P ERVVVDSTMG +LRIN D+
Sbjct:   45 KQLDVYARVDEDLQVRTETGAAVTIGFWVLMVVLCVGEVQAYRKVQAPTERVVVDSTMGQKLRINIDM 112          
BLAST of mRNA_S-dermatodea_contig12232.1397.1 vs. uniprot
Match: A0A836CGD9_9STRA (Endoplasmic reticulum vesicle transporter-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGD9_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 4.130e-10
Identity = 33/69 (47.83%), Postives = 50/69 (72.46%), Query Frame = 1
Query:    4 RAIDVYARVDEDLQVKTEAGAFVTIGFWALMVVLVVGEIQAFLRTPPPIERVV-VDSTMGHRLRINADV 207
            R +D+YARV+EDL VKTE+GA VT+ FW L+V+LV  E++ FL T    E ++ VD+++G +L I  ++
Sbjct:   42 RRMDLYARVNEDLTVKTESGATVTVVFWVLLVLLVTSEVRTFLATRTSREELMRVDTSLGRKLEIGLNM 110          
BLAST of mRNA_S-dermatodea_contig12232.1397.1 vs. uniprot
Match: A0A8B8HSZ8_9NEOP (endoplasmic reticulum-Golgi intermediate compartment protein 3 isoform X2 n=1 Tax=Vanessa tameamea TaxID=334116 RepID=A0A8B8HSZ8_9NEOP)

HSP 1 Score: 56.6 bits (135), Expect = 1.060e-7
Identity = 29/70 (41.43%), Postives = 47/70 (67.14%), Query Frame = 1
Query:    1 WRAIDVYARVDEDLQVKTEAGAFVTIGFWALMVVLVVGEIQAFLRTPPPIERVVVDSTMGHRLRINADVV 210
            ++  D YA+  ED +VKT  GAF+TI    +MV+L++ E+  +L +P   E + VD++ GH+LRIN D++
Sbjct:    9 FKQFDAYAKTLEDFRVKTATGAFITITGAVIMVLLILSEMHTYL-SPNISEELFVDTSRGHKLRINFDII 77          
BLAST of mRNA_S-dermatodea_contig12232.1397.1 vs. uniprot
Match: A0A8B8HSE8_9NEOP (endoplasmic reticulum-Golgi intermediate compartment protein 3 isoform X1 n=4 Tax=Nymphalinae TaxID=40040 RepID=A0A8B8HSE8_9NEOP)

HSP 1 Score: 56.6 bits (135), Expect = 1.130e-7
Identity = 29/70 (41.43%), Postives = 47/70 (67.14%), Query Frame = 1
Query:    1 WRAIDVYARVDEDLQVKTEAGAFVTIGFWALMVVLVVGEIQAFLRTPPPIERVVVDSTMGHRLRINADVV 210
            ++  D YA+  ED +VKT  GAF+TI    +MV+L++ E+  +L +P   E + VD++ GH+LRIN D++
Sbjct:    9 FKQFDAYAKTLEDFRVKTATGAFITITGAVIMVLLILSEMHTYL-SPNISEELFVDTSRGHKLRINFDII 77          
BLAST of mRNA_S-dermatodea_contig12232.1397.1 vs. uniprot
Match: A0A6J1PBG8_BICAN (endoplasmic reticulum-Golgi intermediate compartment protein 3 n=5 Tax=Satyrini TaxID=127320 RepID=A0A6J1PBG8_BICAN)

HSP 1 Score: 55.1 bits (131), Expect = 3.950e-7
Identity = 26/70 (37.14%), Postives = 47/70 (67.14%), Query Frame = 1
Query:    1 WRAIDVYARVDEDLQVKTEAGAFVTIGFWALMVVLVVGEIQAFLRTPPPIERVVVDSTMGHRLRINADVV 210
            ++ +D YA+  ED +VKT  GA +T+    +MV+L++ E+  ++ +P   E + VD++ GH+LRIN D++
Sbjct:    9 FKQLDAYAKTLEDFRVKTATGAIITVSGAVIMVLLILSELHTYM-SPNISEELFVDTSRGHKLRINFDII 77          
BLAST of mRNA_S-dermatodea_contig12232.1397.1 vs. uniprot
Match: A0A7S2Y179_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y179_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 5.370e-7
Identity = 26/66 (39.39%), Postives = 45/66 (68.18%), Query Frame = 1
Query:   10 IDVYARVDEDLQVKTEAGAFVTIGFWALMVVLVVGEIQAFLRTPPPIERVVVDSTMGHRLRINADV 207
            +DVY++V++D ++KT  G  V++  W L+VVLVV E   +++     E +VVD T+G +LRI+ ++
Sbjct:   31 LDVYSKVEDDFKIKTSQGGTVSVMVWVLVVVLVVTETLQYMKREQR-EHMVVDQTLGQKLRIDLNI 95          
BLAST of mRNA_S-dermatodea_contig12232.1397.1 vs. uniprot
Match: A0A182FV96_ANOAL (U4/U6 small nuclear ribonucleoprotein Prp31 n=1 Tax=Anopheles albimanus TaxID=7167 RepID=A0A182FV96_ANOAL)

HSP 1 Score: 54.7 bits (130), Expect = 5.610e-7
Identity = 28/67 (41.79%), Postives = 46/67 (68.66%), Query Frame = 1
Query:    4 RAIDVYARVDEDLQVKTEAGAFVTIGFWALMVVLVVGEIQAFLRTPPPIERVVVDSTMGHRLRINAD 204
            R +D Y ++D +  ++T +GA +T+    ++VVLV+GEI A+L +P   E + VD+T GH+L+IN D
Sbjct:    8 RRLDAYPKIDNEFSIRTVSGAALTLVSSIVIVVLVIGEINAYL-SPNISEELFVDTTRGHKLQINLD 73          
BLAST of mRNA_S-dermatodea_contig12232.1397.1 vs. uniprot
Match: A0A8J9YHC1_9NEOP ((lesser marbled fritillary) hypothetical protein (Fragment) n=1 Tax=Brenthis ino TaxID=405034 RepID=A0A8J9YHC1_9NEOP)

HSP 1 Score: 53.5 bits (127), Expect = 1.200e-6
Identity = 25/70 (35.71%), Postives = 47/70 (67.14%), Query Frame = 1
Query:    1 WRAIDVYARVDEDLQVKTEAGAFVTIGFWALMVVLVVGEIQAFLRTPPPIERVVVDSTMGHRLRINADVV 210
            ++ +D YA+  ED +VKT  GA +T+    +M++L++ E+  ++ +P   E + VD++ GH+LRIN D++
Sbjct:    9 FKQLDAYAKTLEDFRVKTATGAIITVTGSIIMILLILSELHTYM-SPNISEELFVDTSRGHKLRINFDII 77          
BLAST of mRNA_S-dermatodea_contig12232.1397.1 vs. uniprot
Match: A0A1E1WGK1_PECGO (ERGIC_N domain-containing protein n=1 Tax=Pectinophora gossypiella TaxID=13191 RepID=A0A1E1WGK1_PECGO)

HSP 1 Score: 52.4 bits (124), Expect = 1.310e-6
Identity = 28/70 (40.00%), Postives = 44/70 (62.86%), Query Frame = 1
Query:    1 WRAIDVYARVDEDLQVKTEAGAFVTIGFWALMVVLVVGEIQAFLRTPPPIERVVVDSTMGHRLRINADVV 210
            +R +D YA+  ED +VKT  GA VT+    +M+ L + E+  ++ +P   E + VD++ GH+LRIN D V
Sbjct:    9 FRQLDAYAKTLEDFRVKTATGAAVTVSGVVIMIFLFLSELHTYM-SPNISEELFVDTSRGHKLRINLDFV 77          
BLAST of mRNA_S-dermatodea_contig12232.1397.1 vs. uniprot
Match: A0A182YRI8_ANOST (Uncharacterized protein n=1 Tax=Anopheles stephensi TaxID=30069 RepID=A0A182YRI8_ANOST)

HSP 1 Score: 53.5 bits (127), Expect = 1.340e-6
Identity = 27/67 (40.30%), Postives = 45/67 (67.16%), Query Frame = 1
Query:    4 RAIDVYARVDEDLQVKTEAGAFVTIGFWALMVVLVVGEIQAFLRTPPPIERVVVDSTMGHRLRINAD 204
            R +D Y ++D +  ++T +GA +T+    ++V LV+GEI A+L +P   E + VD+T GH+L+IN D
Sbjct:    8 RRLDAYPKIDNEFSIRTVSGAALTLISTIVIVTLVIGEINAYL-SPNISEELFVDTTRGHKLKINLD 73          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12232.1397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K090_9PHAE6.900e-2270.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CGD9_9STRA4.130e-1047.83Endoplasmic reticulum vesicle transporter-domain-c... [more]
A0A8B8HSZ8_9NEOP1.060e-741.43endoplasmic reticulum-Golgi intermediate compartme... [more]
A0A8B8HSE8_9NEOP1.130e-741.43endoplasmic reticulum-Golgi intermediate compartme... [more]
A0A6J1PBG8_BICAN3.950e-737.14endoplasmic reticulum-Golgi intermediate compartme... [more]
A0A7S2Y179_9STRA5.370e-739.39Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A182FV96_ANOAL5.610e-741.79U4/U6 small nuclear ribonucleoprotein Prp31 n=1 Ta... [more]
A0A8J9YHC1_9NEOP1.200e-635.71(lesser marbled fritillary) hypothetical protein (... [more]
A0A1E1WGK1_PECGO1.310e-640.00ERGIC_N domain-containing protein n=1 Tax=Pectinop... [more]
A0A182YRI8_ANOST1.340e-640.30Uncharacterized protein n=1 Tax=Anopheles stephens... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12232contigS-dermatodea_contig12232:6782..6991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue2.1e-18
Seed eggNOG ortholog2880.D7FQQ1
Preferred nameERGIC3
KEGG koko:K20365,ko:K20367
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016192,GO:0030134,GO:0030135,GO:0030173,GO:0030176,GO:0031090,GO:0031224,GO:0031227,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0033036,GO:0034613,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098791,GO:0098827
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsCOG0445@1,KOG2667@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categorysignal anchor
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924238.2821722-CDS-S-dermatodea_contig12232:6781..69911622924238.2821722-CDS-S-dermatodea_contig12232:6781..6991Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12232 6782..6991 +
1694079116.1370263-CDS-S-dermatodea_contig12232:6781..69911694079116.1370263-CDS-S-dermatodea_contig12232:6781..6991Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12232 6782..6991 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12232.1397.1prot_S-dermatodea_contig12232.1397.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12232 6782..6991 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12232.1397.1

>prot_S-dermatodea_contig12232.1397.1 ID=prot_S-dermatodea_contig12232.1397.1|Name=mRNA_S-dermatodea_contig12232.1397.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=70bp
WRAIDVYARVDEDLQVKTEAGAFVTIGFWALMVVLVVGEIQAFLRTPPPI
ERVVVDSTMGHRLRINADVV
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mRNA from alignment at S-dermatodea_contig12232:6782..6991+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12232.1397.1 ID=mRNA_S-dermatodea_contig12232.1397.1|Name=mRNA_S-dermatodea_contig12232.1397.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at S-dermatodea_contig12232:6782..6991+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGCGCGCCATTGACGTCTACGCGAGAGTCGATGAGGACCTCCAAGTAAA GACAGAAGCGGGAGCGTTCGTCACGATAGGTTTCTGGGCGCTGATGGTGG TGCTGGTTGTCGGCGAGATCCAAGCCTTTCTGAGGACGCCGCCACCGATC GAGAGAGTCGTGGTGGACTCAACAATGGGGCATCGGTTGCGGATCAACGC CGATGTTGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12232:6782..6991+

>mRNA_S-dermatodea_contig12232.1397.1 ID=mRNA_S-dermatodea_contig12232.1397.1|Name=mRNA_S-dermatodea_contig12232.1397.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at S-dermatodea_contig12232:6782..6991+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGCGCGCCATTGACGTCTACGCGAGAGTCGATGAGGACCTCCAAGTAAA
GACAGAAGCGGGAGCGTTCGTCACGATAGGTTTCTGGGCGCTGATGGTGG
TGCTGGTTGTCGGCGAGATCCAAGCCTTTCTGAGGACGCCGCCACCGATC
GAGAGAGTCGTGGTGGACTCAACAATGGGGCATCGGTTGCGGATCAACGC
CGATGTTGTGTGGCGCGCCATTGACGTCTACGCGAGAGTCGATGAGGACC
TCCAAGTAAAGACAGAAGCGGGAGCGTTCGTCACGATAGGTTTCTGGGCG
CTGATGGTGGTGCTGGTTGTCGGCGAGATCCAAGCCTTTCTGAGGACGCC
GCCACCGATCGAGAGAGTCGTGGTGGACTCAACAATGGGGCATCGGTTGC
GGATCAACGCCGATGTTGTG
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