mRNA_S-dermatodea_contig12229.1391.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12229.1391.1
Unique NamemRNA_S-dermatodea_contig12229.1391.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12229.1391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12229contigS-dermatodea_contig12229:1324..1734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size411
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924237.8349793-CDS-S-dermatodea_contig12229:1323..17341622924237.8349793-CDS-S-dermatodea_contig12229:1323..1734Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12229 1324..1734 +
1694079115.7881718-CDS-S-dermatodea_contig12229:1323..17341694079115.7881718-CDS-S-dermatodea_contig12229:1323..1734Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12229 1324..1734 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12229.1391.1prot_S-dermatodea_contig12229.1391.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12229 1324..1734 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12229.1391.1

>prot_S-dermatodea_contig12229.1391.1 ID=prot_S-dermatodea_contig12229.1391.1|Name=mRNA_S-dermatodea_contig12229.1391.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=137bp
FSYFEVFTWVYEAVPVVNPTGLVFQQKPQQASCRKHTRDENPTKRRISWG
ATNTAPTHAYICTRRHQTRRLLARTHPAQDATEANQIVIIIPPTETSSLG
SPPQLAPHVARPLVPNSHRVDCCHRPSLPAVQHRTAR
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mRNA from alignment at S-dermatodea_contig12229:1324..1734+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12229.1391.1 ID=mRNA_S-dermatodea_contig12229.1391.1|Name=mRNA_S-dermatodea_contig12229.1391.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=411bp|location=Sequence derived from alignment at S-dermatodea_contig12229:1324..1734+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTTTCATACTTCGAAGTATTTACTTGGGTCTATGAAGCGGTGCCCGTTGT
CAATCCAACCGGACTGGTGTTCCAACAGAAACCGCAGCAAGCGAGCTGCA
GGAAACACACACGAGACGAAAACCCGACCAAACGCCGCATCAGCTGGGGA
GCAACGAATACGGCGCCAACGCACGCATATATATGTACAAGGCGCCACCA
GACGCGCAGACTACTGGCACGGACACATCCCGCACAGGACGCCACCGAGG
CGAACCAAATAGTCATTATAATCCCCCCCACAGAGACATCATCACTTGGG
TCTCCCCCGCAGTTGGCCCCGCACGTCGCACGCCCTCTTGTCCCGAACTC
CCATCGCGTCGACTGCTGTCACCGCCCCTCTCTCCCCGCCGTCCAGCATC
GAACGGCGAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12229:1324..1734+

>mRNA_S-dermatodea_contig12229.1391.1 ID=mRNA_S-dermatodea_contig12229.1391.1|Name=mRNA_S-dermatodea_contig12229.1391.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at S-dermatodea_contig12229:1324..1734+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTTTCATACTTCGAAGTATTTACTTGGGTCTATGAAGCGGTGCCCGTTGT
CAATCCAACCGGACTGGTGTTCCAACAGAAACCGCAGCAAGCGAGCTGCA
GGAAACACACACGAGACGAAAACCCGACCAAACGCCGCATCAGCTGGGGA
GCAACGAATACGGCGCCAACGCACGCATATATATGTACAAGGCGCCACCA
GACGCGCAGACTACTGGCACGGACACATCCCGCACAGGACGCCACCGAGG
CGAACCAAATAGTCATTATAATCCCCCCCACAGAGACATCATCACTTGGG
TCTCCCCCGCAGTTGGCCCCGCACGTCGCACGCCCTCTTGTCCCGAACTC
CCATCGCGTCGACTGCTGTCACCGCCCCTCTCTCCCCGCCGTCCAGCATC
GAACGGCGAGGTTTTCATACTTCGAAGTATTTACTTGGGTCTATGAAGCG
GTGCCCGTTGTCAATCCAACCGGACTGGTGTTCCAACAGAAACCGCAGCA
AGCGAGCTGCAGGAAACACACACGAGACGAAAACCCGACCAAACGCCGCA
TCAGCTGGGGAGCAACGAATACGGCGCCAACGCACGCATATATATGTACA
AGGCGCCACCAGACGCGCAGACTACTGGCACGGACACATCCCGCACAGGA
CGCCACCGAGGCGAACCAAATAGTCATTATAATCCCCCCCACAGAGACAT
CATCACTTGGGTCTCCCCCGCAGTTGGCCCCGCACGTCGCACGCCCTCTT
GTCCCGAACTCCCATCGCGTCGACTGCTGTCACCGCCCCTCTCTCCCCGC
CGTCCAGCATCGAACGGCGAGG
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