mRNA_S-dermatodea_contig12229.1392.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12229.1392.1
Unique NamemRNA_S-dermatodea_contig12229.1392.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12229.1392.1 vs. uniprot
Match: A0A6H5JN11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN11_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 6.690e-6
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:  130 DEDEGDDTPALFVTGMPRDVWANPSLGALAALIDEAQDE 246
            ++++ +D  ALF T MPRDVWANPSL ALAA+IDE  +E
Sbjct:    8 EQEKDEDVCALFATSMPRDVWANPSLAALAAMIDEDAEE 46
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12229.1392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JN11_9PHAE6.690e-661.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12229contigS-dermatodea_contig12229:1736..3397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size563
Cds size561
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924237.7804585-CDS-S-dermatodea_contig12229:1735..20221622924237.7804585-CDS-S-dermatodea_contig12229:1735..2022Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12229 1736..2022 -
1694079115.7704155-CDS-S-dermatodea_contig12229:1735..20221694079115.7704155-CDS-S-dermatodea_contig12229:1735..2022Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12229 1736..2022 -
1622924237.792771-CDS-S-dermatodea_contig12229:3123..33971622924237.792771-CDS-S-dermatodea_contig12229:3123..3397Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12229 3124..3397 -
1694079115.7794383-CDS-S-dermatodea_contig12229:3123..33971694079115.7794383-CDS-S-dermatodea_contig12229:3123..3397Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12229 3124..3397 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12229.1392.1prot_S-dermatodea_contig12229.1392.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12229 1736..3397 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12229.1392.1

>prot_S-dermatodea_contig12229.1392.1 ID=prot_S-dermatodea_contig12229.1392.1|Name=mRNA_S-dermatodea_contig12229.1392.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=187bp
AESLDTPAANTIELPDTMDMELSEAVGVSSKPGLSIDASKDARDEDEGDD
TPALFVTGMPRDVWANPSLGALAALIDEAQDEEGDGREVHQGDGSPTNAA
SDSDSAGDAEAVSGKALPTTGQAGQEHGGHSNGMDGVGSGATPSGDGAES
FASAPGDLSSSRSSSVKGSGAGRQHREDLRARRRDRR
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mRNA from alignment at S-dermatodea_contig12229:1736..3397-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12229.1392.1 ID=mRNA_S-dermatodea_contig12229.1392.1|Name=mRNA_S-dermatodea_contig12229.1392.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1662bp|location=Sequence derived from alignment at S-dermatodea_contig12229:1736..3397- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGAGAGTCTCGACACGCCTGCAGCCAACACGATTGAGCTACCAGATAC
TATGGACATGGAGCTTTCGGAAGCCGTTGGCGTCTCCTCGAAGCCAGGGC
TATCAATAGATGCATCAAAAGATGCACGAGATGAAGACGAGGGAGACGAC
ACGCCGGCATTGTTTGTCACCGGCATGCCTCGAGACGTGTGGGCGAACCC
GTCCTTGGGAGCTCTGGCTGCGCTTATTGACGAGGCTCAGGACGAGGAGG
GGGACGGTCGTGAGGTGCACCAAGGTATGAGAGCATATGCGTACTTGTGC
ATTTAACTGCCATTCACTATTGTAGTGAGTATCCACGGCTGCGCACGTGA
GGTGTGCGTGGGCATGACGATGTTTGGGTTAGGAGGGCACGGTGGTGAAA
GTACCCACGGCAGGGTTCACCCACGGACGAAGCCAAGCATGCGGGGGCGG
GAACAAAAGTGTATAGAACAAAATGACTCTGCTTATTCTATATGTTTAGC
ATCAGCAAATTTTTGGCATCAAGGCTCTACTTTAAACTCTAAATAAAAAT
CGTACAAAACGCTACAAGTATTACTATTAATTGATAAAAGATACCACACA
TACTTCACGAAGAACAACAGTGCGACACTTGAGATCAACTAGAACTGCTG
GGGCTCTTGCGGTGTTGGGTATCAAACTGTCAACACGGTTTACCTCCTCC
GTTGGAAAGCGACGCCAAGATGGTTGGGTCGAGAGGGCCAGCGCTCCTGC
AATCGAAGTCGCATCGGTGTCGGTCCGCCTGGCTGTTGGGTAGCTTTCTT
CGCATATATGCGAAGCCTGGACCTTTGATTCGCACACCGCGTTGGGCGTA
AGAAATCCGCGTCTAACATATTACCTACTGGTGTGCGTTTTTCATTTTCT
CGATTGCTCATCTGACCACGAGCGGCATCGGCAACCATTTGGCGGGCCGG
TCGGGTGCAAGTGAGATAGTCAATCAATCGGTCAAGCAATCAGCCGTATG
TGTAGTGTACGCTCGCTGCAGCAGGTCAGAGAAAGTAAAGATGGAGTGCG
TCATTTCGAGTCCCTCGGGTGAAGAGAGCACATAATACGCACGCCGAGTG
CCAAACACATGTTGATGGCATTTTGCGGGCATTAATGGTGCACGGTACAG
CGCACTATTAATATTGTCTGAAGAAGAACATAATGTGATGCGATAGCAGT
AAAACACGGTCCGTCCGAAAAAAAGTGTTCGACGTTCTACAGGTTAAATC
CTTGCAAATATTACATTTCGAGCGGATGTTGGCGCCCAAAAAAATAGACA
TGTCTAGGTACATACTACCGCGAGCTTTATTAAAGTTCACCACCGTCCTG
TGTTACCATCTTCTCGGCAATGCAGGCGATGGATCACCAACGAACGCAGC
AAGCGATAGCGACTCTGCTGGCGATGCTGAAGCCGTATCCGGCAAAGCCC
TCCCGACCACGGGACAGGCCGGCCAGGAGCACGGCGGTCATAGTAACGGT
ATGGATGGCGTCGGCTCAGGAGCTACGCCCAGCGGTGATGGTGCAGAAAG
CTTTGCAAGTGCACCAGGCGACCTCAGCAGCAGCAGAAGTAGCAGTGTTA
AGGGTTCCGGGGCGGGGAGGCAGCACCGGGAGGACTTGAGAGCAAGACGC
CGCGATCGGAGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12229:1736..3397-

>mRNA_S-dermatodea_contig12229.1392.1 ID=mRNA_S-dermatodea_contig12229.1392.1|Name=mRNA_S-dermatodea_contig12229.1392.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1122bp|location=Sequence derived from alignment at S-dermatodea_contig12229:1736..3397- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGAGAGTCTCGACACGCCTGCAGCCAACACGATTGAGCTACCAGATAC
TATGGACATGGAGCTTTCGGAAGCCGTTGGCGTCTCCTCGAAGCCAGGGC
TATCAATAGATGCATCAAAAGATGCACGAGATGAAGACGAGGGAGACGAC
ACGCCGGCATTGTTTGTCACCGGCATGCCTCGAGACGTGTGGGCGAACCC
GTCCTTGGGAGCTCTGGCTGCGCTTATTGACGAGGCTCAGGACGAGGAGG
GGGACGGTCGTGAGGTGCACCAAGGCGGAGAGTCTCGACACGCCTGCAGC
CAACACGATTGAGCTACCAGATACTATGGACATGGAGCTTTCGGAAGCCG
TTGGCGTCTCCTCGAAGCCAGGGCTATCAATAGATGCATCAAAAGATGCA
CGAGATGAAGACGAGGGAGACGACACGCCGGCATTGTTTGTCACCGGCAT
GCCTCGAGACGTGTGGGCGAACCCGTCCTTGGGAGCTCTGGCTGCGCTTA
TTGACGAGGCTCAGGACGAGGAGGGGGACGGTCGTGAGGTGCACCAAGGC
GATGGATCACCAACGAACGCAGCAAGCGATAGCGACTCTGCTGGCGATGC
TGAAGCCGTATCCGGCAAAGCCCTCCCGACCACGGGACAGGCCGGCCAGG
AGCACGGCGGTCATAGTAACGGTATGGATGGCGTCGGCTCAGGAGCTACG
CCCAGCGGTGATGGTGCAGAAAGCTTTGCAAGTGCACCAGGCGACCTCAG
CAGCAGCAGAAGTAGCAGTGTTAAGGGTTCCGGGGCGGGGAGGCAGCACC
GGGAGGACTTGAGAGCAAGACGCCGCGATCGGAGAGCGATGGATCACCAA
CGAACGCAGCAAGCGATAGCGACTCTGCTGGCGATGCTGAAGCCGTATCC
GGCAAAGCCCTCCCGACCACGGGACAGGCCGGCCAGGAGCACGGCGGTCA
TAGTAACGGTATGGATGGCGTCGGCTCAGGAGCTACGCCCAGCGGTGATG
GTGCAGAAAGCTTTGCAAGTGCACCAGGCGACCTCAGCAGCAGCAGAAGT
AGCAGTGTTAAGGGTTCCGGGGCGGGGAGGCAGCACCGGGAGGACTTGAG
AGCAAGACGCCGCGATCGGAGA
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