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Homology
BLAST of mRNA_S-dermatodea_contig1222.1389.1 vs. uniprot
Match: A0A6H5JHG4_9PHAE (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHG4_9PHAE) HSP 1 Score: 167 bits (423), Expect = 8.300e-43 Identity = 111/230 (48.26%), Postives = 142/230 (61.74%), Query Frame = 1
Query: 52 SISCEVFLESGKAYTCSVVCLTGQKGS-LRSHTPPLSSTTETTAAGVSTTAAFCGFLLTVYGARPIQVVAGEKRPAAVGYFPVGPSLHQAVSHLWLEGHQSSSAIADDDGGQR-------LQAFALCRGAALAVVAAGDSAALFVLINTSSSEIGVALTLTSLEGATVSAASPLSETS-------NVVRCPPESQRVVLLLARTADHGTFRHAFFYRLLTPPSSAPASAS 696
S+SCEVFLESGKAYT SVVCL G+ + S P S+ + A F GF +TVY ARP+Q+V GE+RPA+ GYF S+HQA+S S +A G+R LQ+FAL GAAL+VV SA F+LIN SSSE+ + LTLTSLEGATVS +P S+ S + CP SQ++ L+LARTADHG+F H F+YR+L P +APA+ +
Sbjct: 259 SLSCEVFLESGKAYTASVVCLGGEDSDKILSGRPKFSAASTLLAESTG----FRGFRVTVYSARPLQIVPGEQRPASPGYFRAESSIHQALSR-----RSSEEILAKGIVGRRAVSVRNPLQSFALGGGAALSVVPMEGSALFFLLINVSSSEVVLRLTLTSLEGATVS--TPDSQASPDGKGMMSSTMCPARSQKIALVLARTADHGSFSHEFYYRVLRPAPTAPATTA 477
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 1218 |
| Cds size | 1215 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1222.1389.1 >prot_S-dermatodea_contig1222.1389.1 ID=prot_S-dermatodea_contig1222.1389.1|Name=mRNA_S-dermatodea_contig1222.1389.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=405bp
SNGGGTLVAACLGGAKRSISCEVFLESGKAYTCSVVCLTGQKGSLRSHTP
PLSSTTETTAAGVSTTAAFCGFLLTVYGARPIQVVAGEKRPAAVGYFPVG
PSLHQAVSHLWLEGHQSSSAIADDDGGQRLQAFALCRGAALAVVAAGDSA
ALFVLINTSSSEIGVALTLTSLEGATVSAASPLSETSNVVRCPPESQRVV
LLLARTADHGTFRHAFFYRLLTPPSSAPASASRPPGAKAAAAAQGAGCGK
EPSGDCHNHTTTTLSSSAATGCISSRSSTAGQRQRQAAVVDLCSSQDEDE
DEDEGRAEGREATVEAKPATKRPLPAPLETGATTINAAAIAPTLQCDSAT
PQITLAATARSTGGRPCERRCSKDTASITDDADSGFNGKKHLQERGGGRT
GLGGG back to topmRNA from alignment at S-dermatodea_contig1222:15168..19250- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig1222.1389.1 ID=mRNA_S-dermatodea_contig1222.1389.1|Name=mRNA_S-dermatodea_contig1222.1389.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4083bp|location=Sequence derived from alignment at S-dermatodea_contig1222:15168..19250- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCAACGGCGGCGGAACGCTGGTGGCCGCTTGTCTCGGTGGGGCCAAGCG
GTACGTCATGACAAACCACTCACGATATCCTGTTTCCATTTCTCGCTCGC
CGGCGAGCGGAGGAAATTGTGTACAGAAGAAGGAGTTGTATGCGTAACGC
AACCCGGCCACATAACCAGAAGCCCACCGTCCACAGGATTGCACCTTGTA
CCTCAACATGCTCGGAGACAAGTACGGTATAGTTGACGCCCCGCAACTTT
CTTGAACTGTCATACGCCTTGTACTGTAGCGAATAACTAGTTGCGTCCGA
GCACGCGATTCCACGTGGACGGACTGTTGGGATATCGCTTGCGAAAAATT
GCAGGTGCCATGGTGCCGGGATGTGCTATGTGAATGCGACGAAAACGAAA
CAACCCATCGTTGATGCATGCATGCTATCGGACACCGCCACAGAAACGGC
GGTACTTGTGAACGCCTACTCCTTAAAGTTACAACAGAGGGGTGAGGATA
TGCTCGGTGGTTCGGCGGGATTTGTGTGCGCAGTCATTCTGTGCAGCGTG
AATGCGGGCGCTATTTTGTGCATCGTTACACCGTTAATTGACGATACTCT
GTTCACAAACGAAGCGAGCGCCTTCAGCGAGCAGGCAAAACTGCCGGGTG
CTTCGCAGTAAAACTCACGCTGTTTTGGCATCCCTTCCCTTCCACCCACC
CTTTTTTTTGTATGCCCAAAATCCATGCAAAGCTCCATATCTTGCGAGGT
ATTCCTAGAGAGCGGGAAGGCGTACACGTGTTCCGTCGTGTGTCTGACCG
GCCAAAAGGGAAGCCTCCGGTCCCACACACCCCCTCTTTCGTCCACCACC
GAGACGACCGCGGCAGGCGTTTCAACCACTGCCGCATTTTGTGGCTTCCT
CCTCACGGTGTATGGCGCTCGCCCCATCCAGGTGACTTATTAATCTTGTT
TTGCGATACGAGCAGGAGAATTCCCTGGCTACCCTACGCCGGCGTCGGGG
CGAGTTTTTTGTAGCGATTTGTAAGGAAAGACCCCGCGATTCTCGCGCGG
CAGCTGAGCGAGCTACACCAGGGAGCTCTCCCTGCGCATGCCCCCTCCCG
AAATTATGAGAGCGGCTTGTGTGCCTGGACGGCATGAGGATTGCAGGCTT
TTCAGCGCTCGGAACGTTCGCAGTGACGATTTGTCTTGTGATGTTTCGGG
ACTTGTCAAGCCTAAGATTTGCAGGACCAAGGAGTTGTGTGGCCAGCCTT
CACAGCAGAGCATAAGTGCAATGCCTGAACATCTGGGCCTGATGGTAGCT
GTTGTCACGCCATCGGTTGTGCCGGCGGGTGTACGCGAGTTCGGACTATT
AATAAATGCAATCGCTTGCAAAACACGCTCAGGTGGTTGCCGGCGAGAAG
AGACCCGCCGCGGTGGGATACTTCCCTGTTGGCCCTTCGTTGCACCAAGC
CGTCTCGCACCTGTGGCTCGAGGTATTTCCGTCTTCCATGCTCTTGGCGG
TTTGAAAGGTGGAATATTTCGCCCTGTCGTGAGAACTGCCGTGCTAGCGT
CAGCCTTGTCTTGTTTTGGATGTAGTTTAGATACATCTGGTGTTGATGAA
AGCTTGTGGTACAGTCGACAATTCGATCTGACGAATCTCGCGAGTTCGAC
CCGCGCATCTTCAGTACGTGCGCGCCGGGCTTGGATTGACACATAGCTTG
GTTTTCCGCCACTGCGGGAAGTTTGTCTCGCCTGGCTTCTTTGAGTTGCA
CGTCCATTTATGGCTCGTTGTTGTTGAAGCGTAGGGTTTGCCTAACTTTC
GACCACCCCCGGCACAATTTTACTCCCCCACCAGTATTCGCAACGACCAC
GGCTCTCCTGCAACAATAACCTTCCCCTAAGCAAGAAGTGTGCCCAGGAC
ACAATGCGACACGGGGAAGCTATGTGCAGGCCTTTTGTCCAACGATGCGA
ACACGGATGCGAAGTCAACGTTCCGCTACATTAGGTGTGCCTTGCTCGCG
ATTTCATAAGCCCAATCGCGCCCTTCTTGCGCCTCTGTGCGTCTGACTTT
CTGCTAATGCTGTGCATGGTGGCCTTGCTGTGCTGTTGGCAGGGTCATCA
GTCAAGCTCGGCGATAGCAGATGACGACGGTGGGCAGCGGCTGCAGGCAT
TTGCGCTGTGCAGGGGAGCAGCCCTTGCGGTTGTGGCTGCTGGTGACAGC
GCGGCATTGTTCGTTCTTATAAATACCAGGTAAGTTTGTCTAAACAATCC
AGAAATCGAGTCTATTAGTACATCCTAGTAGTACGAAGTCAATGGATCCA
TCGTCGGCGTTTCGCTTGTTGTTCCCTCTGACAACGGAGGAGGGTCGGAA
AGGTTCTGAGAAGCGTGACCAACGCAAGGATAAAAAATACCAGCCATATC
GAACTTGCCAACTGTTCATTACTGCTCACACGAGCGAGCCGCTACTCGCG
CTCCGCCCCCCAAAATCGCTTGAGCTCGAGTCGACGTCGATGTATTTTCC
TTCTTCGCCCCCCGTGATTTTTAGCTCATCGGAGATTGGAGTGGCTCTGA
CCCTTACCTCGCTGGAGGGGGCAACCGTTAGCGCGGCTTCGCCGTTATCC
GAGACCAGCAACGTTGTCCGGTGTCCGCCGGAGTCGCAAAGAGTCGTGCT
TCTGCTCGCTCGCACAGGTATGTCTATGTGTGGAAGGGACGAGCAAAATG
GTTTTGGTTCATCCATGATAACGTGTCGTGCGCATCCCTTGCCTCTCCAC
CGACGTGCACCTCTAGTGTCACGTCGTCGGCAGAGACTTTTGTGCGATGT
TGCTCGGCGACTACCTTACACTGGTTGTGGGGCTTATGGGTAAACTTGTT
GAATCTATCGCGTGTTTTATGGAGTAATGAAGCACGTAGGAGGCCGCTTT
ATTCGTGTGCTATGTTTTTAGTCGTCGTTCCGTGGCGATGTCAGGCTGGA
GACTGCGGAGCTCGGTTCGAGGGGGCGAGGTGCTCCGAGTATGAGGCAGT
CGCTCAATCAATATTCACATCGAATAAATCGTTCAAAGTCCGAATCGACT
GCTGAAAGACCCACTTTTGTGATTGAGGTGCATACGCTCCAACACTACGT
TACTGTGGCAAGACCCGAGGAGAGGTAGCGCGCCAACGTCTCGGTTTCGA
GAGCAATGCTCAGAAGAGGGTGTGTCGTCACCGACGATTGGGCTCCCGTT
GTACCTGCTCGATGGAGTGGTGCCGGTGGATAAGATATCGGCCGACCGAA
CCGGAGAGGTTTGCGTCGATCTTCGTGAAGCCGGCCGATGTGGAGGCACC
ATAGGCATGCTGTGTGACGCCTCTCTGACGTTGCAATCGCCCATGAGATA
CGGTAAGGCGACATACGTTCGTGTGAAGCTTGGTACTTGCCGCCATCTGC
AGTGTAACAAGCGTCGCCCATGCCTCCCTTTGTTGTTCTTCGTGTTTCGT
GTATTGTATGCGGCAAATGTTGCACGCCAAATCAGCGGACCACGGGACGT
TCCGTCACGCCTTCTTCTATCGACTGCTGACTCCACCATCGTCAGCACCC
GCGTCAGCCTCACGCCCCCCAGGCGCAAAGGCAGCAGCCGCAGCACAAGG
AGCAGGGTGTGGCAAAGAACCTTCGGGCGATTGCCATAACCACACCACTA
CCACACTTTCTAGTAGTGCTGCGACGGGATGTATCAGCAGCAGAAGTAGC
ACGGCGGGACAGCGACAGCGCCAAGCGGCGGTAGTAGACCTGTGCTCGTC
TCAAGACGAGGACGAGGACGAGGACGAGGGACGAGCAGAAGGCCGGGAAG
CGACGGTAGAGGCGAAACCGGCGACAAAAAGGCCACTACCGGCACCCTTG
GAGACGGGGGCGACGACGATAAACGCGGCCGCGATCGCTCCCACCCTACA
ATGTGACTCTGCAACGCCGCAAATCACCCTTGCCGCTACCGCCAGGAGCA
CAGGCGGAAGACCTTGCGAACGACGGTGCAGCAAGGACACCGCCAGCATT
ACCGACGACGCGGATAGTGGCTTTAACGGAAAAAAACACCTCCAAGAAAG
AGGCGGGGGTAGAACAGGTCTAGGAGGTGGGGG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig1222:15168..19250- >mRNA_S-dermatodea_contig1222.1389.1 ID=mRNA_S-dermatodea_contig1222.1389.1|Name=mRNA_S-dermatodea_contig1222.1389.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2430bp|location=Sequence derived from alignment at S-dermatodea_contig1222:15168..19250- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCAACGGCGGCGGAACGCTGGTGGCCGCTTGTCTCGGTGGGGCCAAGCG
AGCAACGGCGGCGGAACGCTGGTGGCCGCTTGTCTCGGTGGGGCCAAGCG
CTCCATATCTTGCGAGGTATTCCTAGAGAGCGGGAAGGCGTACACGTGTT
CCGTCGTGTGTCTGACCGGCCAAAAGGGAAGCCTCCGGTCCCACACACCC
CCTCTTTCGTCCACCACCGAGACGACCGCGGCAGGCGTTTCAACCACTGC
CGCATTTTGTGGCTTCCTCCTCACGGTGTATGGCGCTCGCCCCATCCAGC
TCCATATCTTGCGAGGTATTCCTAGAGAGCGGGAAGGCGTACACGTGTTC
CGTCGTGTGTCTGACCGGCCAAAAGGGAAGCCTCCGGTCCCACACACCCC
CTCTTTCGTCCACCACCGAGACGACCGCGGCAGGCGTTTCAACCACTGCC
GCATTTTGTGGCTTCCTCCTCACGGTGTATGGCGCTCGCCCCATCCAGGT
GGTTGCCGGCGAGAAGAGACCCGCCGCGGTGGGATACTTCCCTGTTGGCC
CTTCGTTGCACCAAGCCGTCTCGCACCTGTGGCTCGAGGTGGTTGCCGGC
GAGAAGAGACCCGCCGCGGTGGGATACTTCCCTGTTGGCCCTTCGTTGCA
CCAAGCCGTCTCGCACCTGTGGCTCGAGGGTCATCAGTCAAGCTCGGCGA
TAGCAGATGACGACGGTGGGCAGCGGCTGCAGGCATTTGCGCTGTGCAGG
GGAGCAGCCCTTGCGGTTGTGGCTGCTGGTGACAGCGCGGCATTGTTCGT
TCTTATAAATACCAGGGTCATCAGTCAAGCTCGGCGATAGCAGATGACGA
CGGTGGGCAGCGGCTGCAGGCATTTGCGCTGTGCAGGGGAGCAGCCCTTG
CGGTTGTGGCTGCTGGTGACAGCGCGGCATTGTTCGTTCTTATAAATACC
AGCTCATCGGAGATTGGAGTGGCTCTGACCCTTACCTCGCTGGAGGGGGC
AACCGTTAGCGCGGCTTCGCCGTTATCCGAGACCAGCAACGTTGTCCGGT
GTCCGCCGGAGTCGCAAAGAGTCGTGCTTCTGCTCGCTCGCACAGCTCAT
CGGAGATTGGAGTGGCTCTGACCCTTACCTCGCTGGAGGGGGCAACCGTT
AGCGCGGCTTCGCCGTTATCCGAGACCAGCAACGTTGTCCGGTGTCCGCC
GGAGTCGCAAAGAGTCGTGCTTCTGCTCGCTCGCACAGCGGACCACGGGA
CGTTCCGTCACGCCTTCTTCTATCGACTGCTGACTCCACCATCGTCAGCA
CCCGCGTCAGCCTCACGCCCCCCAGGCGCAAAGGCAGCAGCCGCAGCACA
AGGAGCAGGGTGTGGCAAAGAACCTTCGGGCGATTGCCATAACCACACCA
CTACCACACTTTCTAGTAGTGCTGCGACGGGATGTATCAGCAGCAGAAGT
AGCACGGCGGGACAGCGACAGCGCCAAGCGGCGGTAGTAGACCTGTGCTC
GTCTCAAGACGAGGACGAGGACGAGGACGAGGGACGAGCAGAAGGCCGGG
AAGCGACGGTAGAGGCGAAACCGGCGACAAAAAGGCCACTACCGGCACCC
TTGGAGACGGGGGCGACGACGATAAACGCGGCCGCGATCGCTCCCACCCT
ACAATGTGACTCTGCAACGCCGCAAATCACCCTTGCCGCTACCGCCAGGA
GCACAGGCGGAAGACCTTGCGAACGACGGTGCAGCAAGGACACCGCCAGC
ATTACCGACGACGCGGATAGTGGCTTTAACGGAAAAAAACACCTCCAAGA
AAGAGGCGGGGGTAGAACAGGTCTAGGAGGTGGGCGGACCACGGGACGTT
CCGTCACGCCTTCTTCTATCGACTGCTGACTCCACCATCGTCAGCACCCG
CGTCAGCCTCACGCCCCCCAGGCGCAAAGGCAGCAGCCGCAGCACAAGGA
GCAGGGTGTGGCAAAGAACCTTCGGGCGATTGCCATAACCACACCACTAC
CACACTTTCTAGTAGTGCTGCGACGGGATGTATCAGCAGCAGAAGTAGCA
CGGCGGGACAGCGACAGCGCCAAGCGGCGGTAGTAGACCTGTGCTCGTCT
CAAGACGAGGACGAGGACGAGGACGAGGGACGAGCAGAAGGCCGGGAAGC
GACGGTAGAGGCGAAACCGGCGACAAAAAGGCCACTACCGGCACCCTTGG
AGACGGGGGCGACGACGATAAACGCGGCCGCGATCGCTCCCACCCTACAA
TGTGACTCTGCAACGCCGCAAATCACCCTTGCCGCTACCGCCAGGAGCAC
AGGCGGAAGACCTTGCGAACGACGGTGCAGCAAGGACACCGCCAGCATTA
CCGACGACGCGGATAGTGGCTTTAACGGAAAAAAACACCTCCAAGAAAGA
GGCGGGGGTAGAACAGGTCTAGGAGGTGGG back to top
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