mRNA_S-dermatodea_contig1222.1388.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig1222.1388.1 vs. uniprot
Match: D8LJJ2_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJJ2_ECTSI) HSP 1 Score: 530 bits (1366), Expect = 2.250e-175 Identity = 333/661 (50.38%), Postives = 433/661 (65.51%), Query Frame = 1
Query: 286 VRKIATDWDPRRNEQLLGFDCISLDPTEFKELFRRNFGVLLGAQDLGILVSMYDKRDEKRADSAEFIKDFCQMGRKGRESQSRQRTQMARKLNTKQKARLKKRTERVSKFNEVPIGGHTEEDSQTAVAKMTEAAAQFDAAKEKPTHYLDELGYMGPTTFREQLRTLFGLCLTRAEVAGLVSVFELHRDGKLIDGKEFAYRFHAIAKERRAARVVEEMSRHDRVRRRKREAEEALAARMKETSKCKIKWNFTDEELARGRAAIAKAASVFDKGRMSADIDRMAQMQMGPTAFRAQLMQNFRVRLGPGELGALFAEFDKDKSMRIDGAELKHEFFRLGRAERAKQMAEVEHQRRRIDDRENGFRRRLEDRYVEQTVAKVIWPSLLHDPFNEDHSSDDPG-STSKQDTLAQESAGATFDRERRRRNERGEKGELNRRSASRCG--PKISPSTAEFLAQINKEEMSIRVLTSHGRRRRQECRGHADGGDHGETTGGFSPPTEGRLRPSTSCPTGLPA-PVASSQHRHRRRKSSGVTIRDSNDGFVSVASSASREYHETPSPRGGRWNEQSASAAST--------PKS--SPWAPGHEALSTTRD---SSATSGNTSQGLSARGSTARSSKGREYRSPSI---GEGLESP-GKTIVEHEGDEGDDE 2205
++++AT+WDP++ LLGFDC+SL PTEFKELFRRNFGVLL +DLG+LVSMYDK+ E RADSAEF+KDF Q+GR RE Q+R+R QM RKLN KQ RL++R +R SK EV + HTE+ ++A+AK T A ++ ++++ L+ G MGPTTFREQLRT+FGL LTRAEV GL+S F+LHRDG ++D KEFA+RFH +A++ AA+V E +R++ RRR RE EEAL +++E SKCK+ W+F+++EL RG IA AAS +DK R+ ADI+R+AQM+M PTAFRAQL+ NFRVRLGPGELGA+F FDKD S IDG EL HEFFR+GR ERAK +AE E QR R D +E FR+RLEDR++EQT AKV+WP L++DPF++D++ DD +TS T +S G R R + E G+++R ++R PKIS STAEFLAQI KEEM+IR +T GRRR+ H +GG ++ FS P R + P+ PA P+ SS + + + A RE + P R AS+A+T P S +P A GH A +T D S+ATS +T ARGSTARSS+G RS S G G E G+TI EH G G DE
Sbjct: 1 MKRVATNWDPQKQTPLLGFDCVSLGPTEFKELFRRNFGVLLHPRDLGVLVSMYDKQGEGRADSAEFLKDFWQIGRDERELQARKRMQMVRKLNIKQNERLRERADRRSKVKEVAVEKHTEDHVRSAIAKTTRVAERYVVSRDQGFRQLERGGMMGPTTFREQLRTIFGLRLTRAEVGGLISAFDLHRDG-MVDAKEFAFRFHTLARDSHAAKVAEGQARNETARRRNREQEEALLTKLREQSKCKVNWSFSEDELKRGLKMIAVAASTYDKARLGADINRIAQMKMDPTAFRAQLLMNFRVRLGPGELGAVFTAFDKDNSKLIDGTELMHEFFRMGREERAKNLAEAERQRHRADLKEKNFRQRLEDRFIEQTAAKVVWPRLMYDPFDDDYNMDDHDPATSVGSTTLSKSVGDNKSRGRSNNDNNNEPGDVSREPSARRRRRPKISASTAEFLAQIRKEEMTIRAMTCRGRRRKNGDSNHRNGGGD-DSCDLFSYPGGPRTATAAGLPSTSPARPMTSSLKGSINNGDPNRNVHTRAETAAARAPGRRREVN--PEQRDSEEEPVGASSAATDDAEELALPPSRLNPRALGHSASFSTDDGRVSTATSVST-----ARGSTARSSRGGGSRSSSFTASGRGFEPNFGQTIFEHGGVVGGDE 652
BLAST of mRNA_S-dermatodea_contig1222.1388.1 vs. uniprot
Match: A0A835YPN5_9STRA (EF-hand domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPN5_9STRA) HSP 1 Score: 238 bits (606), Expect = 5.040e-62 Identity = 172/516 (33.33%), Postives = 262/516 (50.78%), Query Frame = 1
Query: 154 SHMTLSSVPSYMRA---KSGTELDSDRFRRRKQLISNLPEAASAINRVRKIATDWDPRRNEQLLGFDCISLDPTEFKELFRRNFGVLLGAQDLGILVSMYDKRDEKRADSAEFIKDFCQMGRKGRESQSRQRTQMARKLNTKQKARLKKRTERVSKFNEVPIGGHTEEDSQTAVAKMTEAAAQFDAAKEKPTHYLDELGYMGPTTFREQLRTLFGLCLTRAEVAGLVSVFELHRDGKLIDGKEFAYRFHAIAKERRAARVVEEMSRHDRVRRRKREAEEALAARMKETSKCKIKWNFTDEELARGRAAIAKAASVFDKGRMSADIDRMAQMQMGPTAFRAQLMQNFRVRLGPGELGALFAEFDKDKSMRIDGAELKHEFFRLGRAERAKQMAEVEHQRRRIDDRENGFRRRLEDRYVEQTVAKVIWPSLLHDPFNEDHSSDDPGSTSKQDT---LAQESAGATFDRERRRRNERGEKGELNRRSASRCGPKISP---STAEFLAQINKEEMSIRVL 1674
S TL S SY A K D D FR+R+ ++ P+ + R+ IA W + + GFDCISL PTE +E +RNFGVLL A++LG LV+ +DK + RAD +EF K+F G R+ + R + A + + + R+ + + +S EV +G TE +A++K+ A Q+D K+ L + M T FREQL+ FGL L+ E+ L+ F GK IDG +F F + + R A++ + + + +R ++ + +R+ ++ W+ +D A +AK A+ +D+ R S + M M T F QL Q F +RL ELGALF FD D +DGAE + FF+LGR ERAKQ+AE E R+R++D+ F L+ R V ++ AKV WP + DP++ S + S+ ++ A +AG N R NR +S P + P +TA FL Q++ E SI+ +
Sbjct: 61 SDATLGSTQSYYTAVNTKPVAAHDVDLFRQRRDVLMMHPDVMAVRARIEDIAGRWSIIKQGPIRGFDCISLGPTELREQIKRNFGVLLTARELGALVAWHDKTGDGRADCSEFTKEFYCAGHAARQRRERALAKAATLIAQQHQKRVDAKAKHMSSLKEVRVGSPTEAQRASALSKLAAIACQYDTQKQGSLATLTQTCNMSATVFREQLKMRFGLKLSPGELGALMQEFG-REGGKSIDGAQFMGHFTQLGRHERYAQLQRQRRQDEALRXXXXRHQDEVVSRLGALVAARVNWSPSDAARATALNKVAKEAAHYDRDR-SIGLQNMLSGSMDVTGFNTQLRQGFGIRLSSAELGALFKVFDLDGGGTVDGAEFLNAFFKLGREERAKQLAEAERTRQRMEDKRRRFNESLQTRLVLRSTAKVEWPIMEFDPYSTRAESMIDSARSEDESPLDAALNAAGVG--------NARSSPSPDNRHRSSAVAPALPPVTEATAAFLHQLDIVERSIKKM 566
BLAST of mRNA_S-dermatodea_contig1222.1388.1 vs. uniprot
Match: A0A6H5KBB4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBB4_9PHAE) HSP 1 Score: 206 bits (523), Expect = 2.700e-55 Identity = 169/402 (42.04%), Postives = 217/402 (53.98%), Query Frame = 1
Query: 1135 MQMGPTAFRAQLMQNFRVRLGPGELGALFAEFDKDKSMRIDGAE-----------------LKHEFFRLGRAERAKQMAEVEHQRRRIDDRENGFRRRLEDRYVEQTVAKVIWPSLLHDPFNEDHSSDDPG-STSKQDTLAQESAGATFDRERRRRNERGEKGELNRRSASRCG--PKISPSTAEFLAQINKEEMSIRVLTSHGRRRRQ-ECRGHADGGDHGETTGGFSPPTEGRLRPSTSCPTGLPA-PVASS-----------QHRHRRRKSSGVTI-----------RDSNDGFVSVASSASREYHETPSPRGGRWNEQSASAASTPKSSPWAPGHEALSTTRD---SSATSGNTSQGLSARGSTARSSKGREYRSPSI---GEGLESP-GKTIVEHEG 2187
M+M PTAFRAQL+ NFRVRLGPGELGA+F FDKD S IDG E L HEFFR+GR ERAK +AE E QR R D +E FRRRLEDR++EQT AKV WP L++DPF+ED++ DD +TS + T +S G R + E G+++R ++R PKIS STAEFLAQI KEEM+IR +T GRRR+ + H GGD ++ FS P R + P+ PA P+ SS ++ H R +++ RDS + V +S+A+ + E P R +P A GH A +T D S+ATS +T ARGSTARSS+ RS S+ G G E G+TI EH G
Sbjct: 1 MKMDPTAFRAQLLMNFRVRLGPGELGAVFTAFDKDNSKLIDGTETFTLAADTYTREHARTKLMHEFFRMGREERAKNLAEAERQRHRADTKEKNFRRRLEDRFIEQTAAKVEWPRLMYDPFDEDYNMDDHDPATSVRSTSLSKSVGDNKSRGSSNNDNNNETGDVSREPSARRRRRPKISASTAEFLAQIRKEEMTIRAMTCRGRRRKNGDSNRHNGGGD--DSCDLFSYPGGPRTATAAGLPSTSPARPMTSSLKGSINNSDPNRNIHTRAETAAARAPGRRREVNPEQRDSEEEAVGASSAATDDAEELALPPSRR--------------NPRALGHSASFSTDDGRVSTATSVST-----ARGSTARSSRDGGSRSSSVTASGRGFEPNFGQTIFEHGG 381
BLAST of mRNA_S-dermatodea_contig1222.1388.1 vs. uniprot
Match: A0A7S3YGZ4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YGZ4_HETAK) HSP 1 Score: 150 bits (380), Expect = 4.450e-35 Identity = 121/402 (30.10%), Postives = 201/402 (50.00%), Query Frame = 1
Query: 247 ISNLPEAASAINRVRKIATDWDPRRNEQLLGFDCISLDPTEFKELFRRNFGVLLGAQDLGILVSMYDKRDEKRADSAEFIKDFCQMGRKGRESQSRQRTQM-ARKLNTKQKARLKKRTERVSKFNEVPIGGHTEEDSQTAVAKMTEAAAQFDAAKEKPTHYLD---ELGYMGPTTFREQLRTLFGLCLTRAEVAGLVSVFELHRDGKLIDGKEFAYRFHAIAKERRAARVVEEMSRHDRVRRRKREAEEALAARMKETSKCKIKWNFTDEELARGRAAIAKAASVFDKGRMSADIDRMAQMQMGPTAFRAQLMQNFRVRLGPGELGALFAEFDKDKSMRIDGAELKHEFFRLGRAERAK--QMAEVEHQRRRIDDRENGFRRRLEDRYVEQTVAKVIWPSLL 1434
I LPE R+ ++A ++DP+R+ L GFD SL P+EFKE RRNFG+ L ++LG +++ +DK + D EF+ +F ++GR+ R Q Q ++ A+ + ++K +K +R TE++ +A+AK+ A FD + K H + E G M P TF++ L + +T E+ L++ F+ DG +D EF +RF I ++ RA ++ R+R ++R+ + + ++ + + ++L A +AK A ++D+ R + M + T F+ QL + V P EL AL EFD D +D AE FFR+GR E+ + EH RRR R ++E R+ + A+V+WP L
Sbjct: 45 IGVLPEIIHVKRRIGELAMNFDPQRSGVLRGFDGASLGPSEFKEQMRRNFGMYLTPEELGAMITWFDKDGDGTVDCGEFLSEFFRLGRELRRKQKLQLDRVHAKHIEDRKKIEAEKARKRTELLQVAVKKDFTEKERASALAKVARVAKHFD--RRKNPHAMKAFVEGGAMDPATFKQTLWRNLSITVTAGELGALMAEFDQDGDGT-VDADEFIFRFFQIGRDARADAHRAKLDLDHRLREKERQFTRGVEEKYARLAEARPREPRPGKDLESAIAKVAKVARLYDRDRGFNLMSFRGTMDL--TKFKEQL-KVLGVLCTPAELTALMREFDHDGDGTVDCAEFLAMFFRIGRREKTAFVERQRAEH-RRRAXXXXXXXREQVE-RFAKMKEARVVWPKPL 438
BLAST of mRNA_S-dermatodea_contig1222.1388.1 vs. uniprot
Match: A0A6H5JI75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI75_9PHAE) HSP 1 Score: 100 bits (248), Expect = 8.990e-18 Identity = 106/361 (29.36%), Postives = 157/361 (43.49%), Query Frame = 1
Query: 262 EAASAINRVRKIATDWDPRR--NEQLLGFDCISLDPTEFKELFRRNFGVLLGAQDLGILVSMYDKRDEKRADSAEFIKDFCQMGRKGRESQSRQRTQMARKLNT-------------KQKARLKKRTERVSKFNEVPIGGHTEEDSQTAVAKMTEAAAQFDAAKEKPTHYLDELGY-MGPTTFREQLRTLFGLCLTRAEVAGLVSVFELHRDGKLIDGKEFAYRFHAIAKERRAARVVEEMSRHDRVRRRKREAEEALAARMKETSKCKIKWNFTDEELARGRAAIAKAASVFDKGRMSA-DIDRMAQMQMGPTAFRAQLMQNFRVRLGPGELGALFAEFDKDKSMRIDGAELKHEFFRLG 1293
+ ASA+ + + A +D + L F+ ++ P F+E RR F + L L +++ +DK + + AEF+ F G + R + R + R +++AR K E S E+ + +AK+ EAA +DA G+ M P FREQLR +F + LT AE+ G++ F+ DG +D EF F + + R R ++ R+ EAEE A KI ++++ A I KAA+ +DK SA +D QM P FR QL + F +RL P ELGA FDKD I E FFRLG
Sbjct: 250 DEASAMALITEAAVAYDKTSPASFSLDAFEGATMTPLVFREQLRRVFNIKLSPPQLAAVMASFDKDHDGSVNCAEFLLKFFMTGFQERSRRLHIRREGERXXXXXXXXXXXXXXXXXEERARQKVDYEYAS------------EEQASGLAKLVEAAVAYDATGPASLGLGAFQGHKMPPHVFREQLRKVFNIKLTPAELGGVMHRFDKDDDGT-VDVVEFTKMFFKMGFDERNRRTKKK---------REAEAEERKNA-------LKINRSYSERHYQSAMAKITKAAARYDKNHPSAVSLDAFDGAQMEPHVFREQLKRAFGIRLTPPELGAAIHAFDKDGDGSISCPEFLRTFFRLG 581
BLAST of mRNA_S-dermatodea_contig1222.1388.1 vs. uniprot
Match: A0A835Z644_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z644_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 1.570e-14 Identity = 92/355 (25.92%), Postives = 156/355 (43.94%), Query Frame = 1
Query: 262 EAASAINRVRKIATDWDPRRNEQLL--GFDCISLDPTEFKELFRRNFGVLLGAQDLGILVSMYDKRDEKRADSAEFIKDFCQMG--RKGRESQSRQRTQMARKLNTKQKARLKKRTERVSKFNEVPIGGHTEEDSQTAVAKMTEAAAQFDAAKEKPTHYLD-ELGYMGPTTFREQLRTLFGLCLTRAEVAGLVSVFELHRDGKLIDGKEFAYRFHAIAKERRAARVVEEMSRHDRVRRRKREAEEALAARMKETSKCKIKWNFTDEELARGRAAIAKAASVFDKGRMS-ADIDRMAQMQMGPTAFRAQLMQNFRVRLGPGELGALFAEFDKDKSMRIDGAELKHEFFRLGRAERA 1308
+ AS + ++R +A +DP L GF S+ P FK+ R F + ++LG L+ ++ + + EF K F ++G + + ++ Q R+ ++ V TE+DS++A+AK+ AA ++D E M P F+EQL+ +F + LTR E+ L+ F+ DG +D EF F R A +E R R R E +FT+ +L I KAAS +D+ + ++ +M P + QL ++F++R P +LGA+ A FD D+S ++ E + FF++G +A
Sbjct: 441 DVASGLAKLRAVAAMYDPSSPSALSLEGFGGESMQPHVFKDQLTRVFRLRPSPRELGALMRHFNVSGDGTVNCVEFTKTFFRLGFDERAKRRKAAIEEQRVREAQALEEXXXXXXXXXXXXXXXVDYD-FTEQDSESAMAKLRRAAERYDRNHPSSMSLAAFEGAKMAPHVFKEQLKRVFNIVLTRPELGALMRHFDKDGDGS-VDCAEFLLSFFKTGFAARNA-ALERRRRAARARXXXXXXXXXXXXAEYEARSAAAVASFTERDLEEALDLILKAASRYDRQALGPGGLEGWCLYRMTPYQLKDQLHRSFQIRPTPPQLGAIMAMFDLDRSGTVEIPEFLNAFFKIGMTAKA 792
BLAST of mRNA_S-dermatodea_contig1222.1388.1 vs. uniprot
Match: D8LDZ3_ECTSI (Hypothetical leucine rich repeat calcium binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDZ3_ECTSI) HSP 1 Score: 80.5 bits (197), Expect = 1.030e-11 Identity = 70/221 (31.67%), Postives = 97/221 (43.89%), Query Frame = 1
Query: 637 HTEEDSQTAVAKMTEAAAQFDAAKEKPTHYLDELGY-MGPTTFREQLRTLFGLCLTRAEVAGLVSVFELHRDGKLIDGKEFAYRFHAIAKERRAARVVEEMSRHDRVRRRKREAEEALAARMKETSKCKIKWNFTDEELARGRAAIAKAASVFDKGRMSA-DIDRMAQMQMGPTAFRAQLMQNFRVRLGPGELGALFAEFDKDKSMRIDGAELKHEFFRLG 1293
+T E+ + +AK+ EAA +DA G+ M P FREQLR +F + LT AE+ G++ F+ DG +D EF F + + R R + KI ++++ A I KAA+ +DK SA +D QM P FR QL + F ++L P ELGA FDKD I E FFRLG
Sbjct: 70 YTSEEQASGLAKLVEAAVAYDATGPASLGLGAFQGHNMPPHVFREQLRKVFNIKLTPAELGGVMHRFDKDDDGT-VDVVEFTKMFFKMGFDERNRRTKXXXXXXXXXXXXXXXXXXXXXXXXXRKNALKINRSYSERHYQSAMAKITKAAARYDKNHPSAVSLDAFDGAQMEPHVFREQLKRAFGIQLTPPELGAAIHAFDKDGDGSISCPEFLRTFFRLG 289 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1222.1388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1222.1388.1 >prot_S-dermatodea_contig1222.1388.1 ID=prot_S-dermatodea_contig1222.1388.1|Name=mRNA_S-dermatodea_contig1222.1388.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=702bp MLSLSSHMTLSSVPSYMRAKSGTELDSDRFRRRKQLISNLPEAASAINRVback to top mRNA from alignment at S-dermatodea_contig1222:3276..14120+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig1222.1388.1 ID=mRNA_S-dermatodea_contig1222.1388.1|Name=mRNA_S-dermatodea_contig1222.1388.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=10845bp|location=Sequence derived from alignment at S-dermatodea_contig1222:3276..14120+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig1222:3276..14120+ >mRNA_S-dermatodea_contig1222.1388.1 ID=mRNA_S-dermatodea_contig1222.1388.1|Name=mRNA_S-dermatodea_contig1222.1388.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=4212bp|location=Sequence derived from alignment at S-dermatodea_contig1222:3276..14120+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |