mRNA_S-dermatodea_contig12219.1387.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12219.1387.1
Unique NamemRNA_S-dermatodea_contig12219.1387.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12219.1387.1 vs. uniprot
Match: D7FJL3_ECTSI (Coronin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJL3_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 3.940e-10
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 3 
Query:  207 LPTIRVGAEVRGLEWDPFCPNYLATGGTDGMV 302
            +P +RVGAEVRGLEWDPFCPN LATGG DGMV
Sbjct:    1 MPAVRVGAEVRGLEWDPFCPNNLATGGGDGMV 32
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12219.1387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJL3_ECTSI3.940e-1084.38Coronin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJL3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12219contigS-dermatodea_contig12219:2065..4233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size304
Cds size303
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12219.1387.1prot_S-dermatodea_contig12219.1387.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12219 2065..4233 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924237.3793132-CDS-S-dermatodea_contig12219:2064..21841622924237.3793132-CDS-S-dermatodea_contig12219:2064..2184Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12219 2065..2184 +
1694079115.4970255-CDS-S-dermatodea_contig12219:2064..21841694079115.4970255-CDS-S-dermatodea_contig12219:2064..2184Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12219 2065..2184 +
1622924237.390947-CDS-S-dermatodea_contig12219:3837..39501622924237.390947-CDS-S-dermatodea_contig12219:3837..3950Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12219 3838..3950 +
1694079115.5070946-CDS-S-dermatodea_contig12219:3837..39501694079115.5070946-CDS-S-dermatodea_contig12219:3837..3950Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12219 3838..3950 +
1622924237.407974-CDS-S-dermatodea_contig12219:4163..42331622924237.407974-CDS-S-dermatodea_contig12219:4163..4233Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12219 4164..4233 +
1694079115.5228417-CDS-S-dermatodea_contig12219:4163..42331694079115.5228417-CDS-S-dermatodea_contig12219:4163..4233Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12219 4164..4233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12219.1387.1

>prot_S-dermatodea_contig12219.1387.1 ID=prot_S-dermatodea_contig12219.1387.1|Name=mRNA_S-dermatodea_contig12219.1387.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=101bp
AERWPSPFVIQSFLCRAESSGTRTFGQAREGPTSTPSLLQPTSSPMLIIT
GTARSCFHSALWGKVDLNRCLPYGSELRSAGWNGTRFARITWPRAGQTAW
*
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mRNA from alignment at S-dermatodea_contig12219:2065..4233+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12219.1387.1 ID=mRNA_S-dermatodea_contig12219.1387.1|Name=mRNA_S-dermatodea_contig12219.1387.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2169bp|location=Sequence derived from alignment at S-dermatodea_contig12219:2065..4233+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTGAGAGATGGCCGTCTCCCTTCGTCATACAGTCCTTTCTCTGCAGGGC
CGAGAGCAGTGGTACGAGGACATTCGGGCAAGCTCGGGAGGGGCCGACGT
CAACCCCCTCGCTGCTTCAGGTGCCCTTGCCTTACAATTGTAGACTTTCT
GTCCTTTTTCCATTACAGTATAATATTATAGTTCGCCGGAGAGACCGCCC
TTGGCCGGTGATAGATGCATCGAGGTCAATTCGCTCTGTTAGAGCTCCTT
GGGTACTGCTGTGGGAGGTCGCGGTTACGATCGTAGCTGGCATGCCCGAG
AAGATATGTGTGCTGTCGGAGCACGACCATGAGATGTGTTGTATAGAAGC
GGAGAGTATGTACAGCAGAGTCACCTCTCTCTGTTGTTCGCTGCAGATGT
TCCTGTCGAGTCTGAATCGAACACCTAATACATATCATACCAGGTGCGAT
ACAACAGAGTACCGACTCTATACTCGTATAATCTGTATGTACTTGTATGC
AAGCTCTCGTAAGATCAATTAAAGATTGTCACATATGGTGCAATCGTTAG
TCCGCTTGCTGCGATGAGGACTGACTACTGTATCAATATGATACCACTAA
ACAATACGATGAAAACTCTTTTCTATGTAAAATATACCTCAGTATGCATT
ACACATGTGCATATTCCTGCCAACGACATACAGCAGTATCCCGCATCCGC
CCATCACCACAACACGCAGGAGCATATACATCAGTCTCAGTCAAGTTCAA
GCAGCAGGGGGGGGCGTGTACGCGGTGTGGCCCGTGAACACTCCCAAGGG
AAAAGCAGCTGACGGTTTTCTAACAGAGTTGGCAGGCTTGGTATTTTAAA
TGCTGCTGTCCCGAGACACAAGAAATTTGAAATTTGCCTCCAGCGCAGGC
ATGCTCATGATATAACCCAGAGGACATCCCACTTCGTATTATATTATGGT
ATGGTTGTGTATTACCTGGTATCGTATATGATAGAAGCTTTACGTCTGTA
GATCATCTTGGCCCAAAGGTCACAGCCAGAACATCAGTCTCCTTCTCCTT
GAATTCTCCTGCTGAGGGTCGGTTCATACTTCATACGATCACAGCTTTCA
TTTTTAATTACATTTTTAGAGAGGCGTTCTGTCATTTAAATTGAACTGAA
CAAGCCGTCAAGTGTGGCAACCTATGTATAGATATTGAAGCCAAGTTGAA
GCCAGTTGAAGCCACGTTGAAGCCACGTTGAAGCCATGTTTAGCCCAAAG
GGCGTTTGGCAGAAAGTCAGACCAATGAGACGTGGACGTGTGAAGGCGAC
CAACAGAGTTAATATTAACATTATTGTATCTGAATAATTAATATTATACA
ACAAGGTACTTTTTTAAAAATATTTTAGAGAAGGGTTCTGTCCAATTTTT
AATAGCGATTTAGAGAAGGATTGTGTCCAGCGAAACCTGTATGATTTCTG
TACGATTTTTTAATAGCGATTTAGAGAAGGATTTTGATGCCAAATAACTT
GATGGTTGTGTTGAGCGCCAAAGGTGTAGAGCTGTACAGCAGTATGCATA
GTGCAGCGGTATGCCTCGGCACGTGAAATCCACGCAAGCAAGCGAGCAAT
AGACAGGACACACTAAACACAAACACTCTTGTTCCTGTTGTAGTGGCGCG
CAGTTTCTTTATCGCTTGCTTTCTTGCTCCTGCCTGCGCGTGGTGCCTCC
CGCCCTACATATATATATCCATAACACGTACCATACGTTTGCCGGACCCC
CGCTGCCCCTGTGCTTCGGGCAGCCAACTTCTTCGCCTATGTTGATCATC
ACGGGTACGGCGCGGTCGTGCTTCCACTCAGCGCTGTGGGGAAAGGTCGA
TCTCAACCGCTGCCTACCATACGGGTCGGAGCTGAGGCAAGCAAGGCGAA
GGGAATCGTGCCCGGATATAGAACAGAAGATCGCTAGGACGCCTCTATTT
TATTGTGTAGTTGCTTCGGCTGCAGGGGTGCCTTGATACGATGAGCAGCA
GTATGCTCCAGCTCTCAGGAGTCAAGACGCGACCAAATTTCTCGCTCGCT
CTCGTTGATCACTGTAGCTTGTCTGTCTACTTCACTCCGCAATCCGCAGG
TCCGCGGGCTGGAATGGGACCCGTTTTGCCCGAATTACCTGGCCACGGGC
GGGACAGACGGCATGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12219:2065..4233+

>mRNA_S-dermatodea_contig12219.1387.1 ID=mRNA_S-dermatodea_contig12219.1387.1|Name=mRNA_S-dermatodea_contig12219.1387.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at S-dermatodea_contig12219:2065..4233+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTGAGAGATGGCCGTCTCCCTTCGTCATACAGTCCTTTCTCTGCAGGGC
CGAGAGCAGTGGTACGAGGACATTCGGGCAAGCTCGGGAGGGGCCGACGT
CAACCCCCTCGCTGCTTCAGGCTGAGAGATGGCCGTCTCCCTTCGTCATA
CAGTCCTTTCTCTGCAGGGCCGAGAGCAGTGGTACGAGGACATTCGGGCA
AGCTCGGGAGGGGCCGACGTCAACCCCCTCGCTGCTTCAGCCAACTTCTT
CGCCTATGTTGATCATCACGGGTACGGCGCGGTCGTGCTTCCACTCAGCG
CTGTGGGGAAAGGTCGATCTCAACCGCTGCCTACCATACGGGTCGGAGCT
GAGCCAACTTCTTCGCCTATGTTGATCATCACGGGTACGGCGCGGTCGTG
CTTCCACTCAGCGCTGTGGGGAAAGGTCGATCTCAACCGCTGCCTACCAT
ACGGGTCGGAGCTGAGGTCCGCGGGCTGGAATGGGACCCGTTTTGCCCGA
ATTACCTGGCCACGGGCGGGACAGACGGCATGGTGAGTCCGCGGGCTGGA
ATGGGACCCGTTTTGCCCGAATTACCTGGCCACGGGCGGGACAGACGGCA
TGGTGA
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