mRNA_S-dermatodea_contig12205.1384.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12205.1384.1
Unique NamemRNA_S-dermatodea_contig12205.1384.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12205.1384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12205contigS-dermatodea_contig12205:902..2357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size298
Cds size246
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12205.1384.1prot_S-dermatodea_contig12205.1384.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12205 912..2315 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924237.1888554-UTR-S-dermatodea_contig12205:901..9111622924237.1888554-UTR-S-dermatodea_contig12205:901..911Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12205 902..911 +
1694079115.3629594-UTR-S-dermatodea_contig12205:901..9111694079115.3629594-UTR-S-dermatodea_contig12205:901..911Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12205 902..911 +
1622924237.2265892-UTR-S-dermatodea_contig12205:2315..23571622924237.2265892-UTR-S-dermatodea_contig12205:2315..2357Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12205 2316..2357 +
1694079115.4070745-UTR-S-dermatodea_contig12205:2315..23571694079115.4070745-UTR-S-dermatodea_contig12205:2315..2357Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12205 2316..2357 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924237.1970754-CDS-S-dermatodea_contig12205:911..9441622924237.1970754-CDS-S-dermatodea_contig12205:911..944Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12205 912..944 +
1694079115.3708532-CDS-S-dermatodea_contig12205:911..9441694079115.3708532-CDS-S-dermatodea_contig12205:911..944Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12205 912..944 +
1622924237.2046452-CDS-S-dermatodea_contig12205:1473..15071622924237.2046452-CDS-S-dermatodea_contig12205:1473..1507Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12205 1474..1507 +
1694079115.3785858-CDS-S-dermatodea_contig12205:1473..15071694079115.3785858-CDS-S-dermatodea_contig12205:1473..1507Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12205 1474..1507 +
1622924237.2153425-CDS-S-dermatodea_contig12205:2136..23151622924237.2153425-CDS-S-dermatodea_contig12205:2136..2315Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12205 2137..2315 +
1694079115.389117-CDS-S-dermatodea_contig12205:2136..23151694079115.389117-CDS-S-dermatodea_contig12205:2136..2315Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12205 2137..2315 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12205.1384.1

>prot_S-dermatodea_contig12205.1384.1 ID=prot_S-dermatodea_contig12205.1384.1|Name=mRNA_S-dermatodea_contig12205.1384.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=82bp
MRDAGKAGAWLVLVAFSAYPEPDGLVTIPSGRAEFRGGRLRNEGLEVTAK
GRVPVTERLSAGTPGKSSRCGWTVHFRRGTR*
back to top

mRNA from alignment at S-dermatodea_contig12205:902..2357+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12205.1384.1 ID=mRNA_S-dermatodea_contig12205.1384.1|Name=mRNA_S-dermatodea_contig12205.1384.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1456bp|location=Sequence derived from alignment at S-dermatodea_contig12205:902..2357+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCACGCCTCATGAGGGACGCTGGCAAGGCCGGAGCGTGGTTGGTAAGCT
GCATGCCTGCGTAGAGACTTGTAACATCATGTGAGCGGGCGGGCGGATGT
GTGTGGCAGGCGGTGGGCTGGCTAGCTTTTGTTCTTGGGGTGCCAGGTTT
GTAGTGGCTGTGATGGATAAACCAAGCCAAGCGTTACGTTTTTGAAGCTC
GTTGGATGGAGGGCCTTTTTGGTGTTTGTTTAGAGCGTCGATGGGTGGAT
TGATTACTACACCTACAGCCCATCGGCTATCTAGCTCCGACCCGACTTGT
GGGCAGACGCCCAAACGTTCAAGGGAAATATTGAAATAGACATGTACTCT
TCGTAGTGATCGTGTATTGTATTTTAGCAGGTTTGGCCATTTTTATGCTG
TGCACTAGTGCTGTAAGATGCGGCAGAGAGCTGCCACAACACCATGTGGC
AGATTATGCCTTGATGTGTTTTTTTAACGCCATCAGGATGGGAAGCCGCA
CAACCACAACCGCTAACGACGACTGCCTGCCTATTTTCGTCCTCTGTTTT
ACATGCTTTTTCGTTGCTGCAGGTGCTTGTTGCATTCTCAGCCTATCCGG
AGCCTGGTACGTCCTCCTGTTCTACTAGGGCGCGGGAGTGTTTTTCCTCT
GCCTCTTGCACTCGGTGTTTCGGCCCCGATCGATTAGCAGCAAAGCCACC
CGCGCGGCGGCAGACTCGAAATCCGCCGCTGGATGCTTCACGATAGAAGT
GCGGTAGTTGGTCTCATTGGTTTGGTTTGTTGGTTCGCTCGAGCGGAGTA
GTCGCCGGTCATTGCTTTGTTTTTGGGCTCCGGTGCTAAAGGGGATCCTG
AGGGGAAGAGGTGGGTTACTCTTTGGAGAAACAGAGGTCGAGAAAAGAAG
GAGCATCAAGTTGCGGAGGCGGCAGGCGACCTCCGCGCTTTCGTTGGGGA
TATTTGAGGGGGAATTTTCGTGAGGCCAGCGCGTCCGGCTTTGCTATGTA
AGCAGGCCCTCCAGTGCCTTCAAGCGCGCAGAAATAGCCAAGGCAGCAGT
CCGCCTTCTTCGCTCCATCGAGGTTTCCATATTATCCGACGCTTGGCCAA
GGCTAGAACTTAAATATACATTTGATTTGATCTAAATTGGCGCGCAGCGG
TTCCCTCATAACTGTATTTTTCGGTTCATCGCTGCCGGAGTCGCGCCTTC
TCTTACGCTACCCCCCGCCGTCCTCCCCTCCCTAGATGGCCTCGTGACGA
TACCCTCAGGGCGCGCAGAGTTTCGTGGAGGGCGTCTTCGGAATGAAGGC
CTCGAGGTCACAGCGAAAGGCAGGGTCCCCGTCACGGAACGCCTTTCAGC
TGGAACACCTGGAAAATCGTCGCGGTGCGGCTGGACGGTACATTTTAGGA
GAGGAACAAGGTGATGGTTGCTGCTGGCGTGGGTTGCAGTGAGCAAGTAC
GCAGCC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12205:902..2357+

>mRNA_S-dermatodea_contig12205.1384.1 ID=mRNA_S-dermatodea_contig12205.1384.1|Name=mRNA_S-dermatodea_contig12205.1384.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at S-dermatodea_contig12205:902..2357+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGGGACGCTGGCAAGGCCGGAGCGTGGTTGATGAGGGACGCTGGCAA
GGCCGGAGCGTGGTTGGTGCTTGTTGCATTCTCAGCCTATCCGGAGCCTG
GTGCTTGTTGCATTCTCAGCCTATCCGGAGCCTGATGGCCTCGTGACGAT
ACCCTCAGGGCGCGCAGAGTTTCGTGGAGGGCGTCTTCGGAATGAAGGCC
TCGAGGTCACAGCGAAAGGCAGGGTCCCCGTCACGGAACGCCTTTCAGCT
GGAACACCTGGAAAATCGTCGCGGTGCGGCTGGACGGTACATTTTAGGAG
AGGAACAAGGTGAATGGCCTCGTGACGATACCCTCAGGGCGCGCAGAGTT
TCGTGGAGGGCGTCTTCGGAATGAAGGCCTCGAGGTCACAGCGAAAGGCA
GGGTCCCCGTCACGGAACGCCTTTCAGCTGGAACACCTGGAAAATCGTCG
CGGTGCGGCTGGACGGTACATTTTAGGAGAGGAACAAGGTGA
back to top