mRNA_S-dermatodea_contig12200.1381.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12200.1381.1
Unique NamemRNA_S-dermatodea_contig12200.1381.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12200.1381.1 vs. uniprot
Match: D8LSB6_ECTSI (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSB6_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 1.880e-12
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 2 
Query:   14 PPMVATAVEPYPLLKTLIADPAFQLFFAQLAAAGSSNQRFVP 139
            P +V TAVEPYPLLK+L+AD AFQLFFAQLAAAG+SNQRFVP
Sbjct:  627 PQIVPTAVEPYPLLKSLVADQAFQLFFAQLAAAGNSNQRFVP 668
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BLAST of mRNA_S-dermatodea_contig12200.1381.1 vs. uniprot
Match: A0A6H5KXJ7_9PHAE (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXJ7_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.900e-12
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 2 
Query:   14 PPMVATAVEPYPLLKTLIADPAFQLFFAQLAAAGSSNQRFVP 139
            P +V TAVEPYPLLK+L+AD AFQLFFAQLAAAG+SNQRFVP
Sbjct:  910 PQIVPTAVEPYPLLKSLVADQAFQLFFAQLAAAGNSNQRFVP 951
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12200.1381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSB6_ECTSI1.880e-1283.33Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A6H5KXJ7_9PHAE1.900e-1283.33Nudix hydrolase domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12200contigS-dermatodea_contig12200:6831..7081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNUDIX hydrolase domain-like
Ec32 orthologEc-21_003100.1
Exons1
Model size251
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12200.1381.1prot_S-dermatodea_contig12200.1381.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12200 6850..7080 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924237.0087032-UTR-S-dermatodea_contig12200:6830..68491622924237.0087032-UTR-S-dermatodea_contig12200:6830..6849Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12200 6831..6849 +
1694079115.2434716-UTR-S-dermatodea_contig12200:6830..68491694079115.2434716-UTR-S-dermatodea_contig12200:6830..6849Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12200 6831..6849 +
1622924237.0319464-UTR-S-dermatodea_contig12200:7080..70811622924237.0319464-UTR-S-dermatodea_contig12200:7080..7081Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12200 7081..7081 +
1694079115.2657635-UTR-S-dermatodea_contig12200:7080..70811694079115.2657635-UTR-S-dermatodea_contig12200:7080..7081Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12200 7081..7081 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924237.0199294-CDS-S-dermatodea_contig12200:6849..70801622924237.0199294-CDS-S-dermatodea_contig12200:6849..7080Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12200 6850..7080 +
1694079115.2525995-CDS-S-dermatodea_contig12200:6849..70801694079115.2525995-CDS-S-dermatodea_contig12200:6849..7080Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12200 6850..7080 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12200.1381.1

>prot_S-dermatodea_contig12200.1381.1 ID=prot_S-dermatodea_contig12200.1381.1|Name=mRNA_S-dermatodea_contig12200.1381.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=77bp
MVATAVEPYPLLKTLIADPAFQLFFAQLAAAGSSNQRFVPPPSVMTRRAE
HGAGAGTGNGEVARGAGGKGAGAPGY*
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mRNA from alignment at S-dermatodea_contig12200:6831..7081+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12200.1381.1 ID=mRNA_S-dermatodea_contig12200.1381.1|Name=mRNA_S-dermatodea_contig12200.1381.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=251bp|location=Sequence derived from alignment at S-dermatodea_contig12200:6831..7081+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCGCCGGAGCCCCCGCCGATGGTCGCGACGGCGGTGGAACCATACCCGT
TGCTGAAGACTCTGATCGCCGACCCAGCGTTTCAACTGTTCTTCGCGCAG
CTGGCCGCGGCTGGGAGCAGCAACCAGCGTTTCGTGCCCCCCCCAAGCGT
AATGACTCGCAGGGCCGAGCACGGGGCAGGCGCCGGGACGGGTAATGGGG
AGGTTGCGCGGGGAGCGGGGGGCAAGGGTGCCGGTGCACCGGGGTACTGA
G
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Coding sequence (CDS) from alignment at S-dermatodea_contig12200:6831..7081+

>mRNA_S-dermatodea_contig12200.1381.1 ID=mRNA_S-dermatodea_contig12200.1381.1|Name=mRNA_S-dermatodea_contig12200.1381.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at S-dermatodea_contig12200:6831..7081+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTCGCGACGGCGGTGGAACCATACCCGTTGCTGAAGACTCTGATCGC
CGACCCAGCGTTTCAACTGTTCTTCGCGCAGCTGGCCGCGGCTGGGAGCA
GCAACCAGCGTTTCGTGCCCCCCCCAAGCGTAATGACTCGCAGGGCCGAG
CACGGGGCAGGCGCCGGGACGGGTAATGGGGAGGTTGCGCGGGGAGCGGG
GGGCAAGGGTGCCGGTGCACCGGGGTACTGAATGGTCGCGACGGCGGTGG
AACCATACCCGTTGCTGAAGACTCTGATCGCCGACCCAGCGTTTCAACTG
TTCTTCGCGCAGCTGGCCGCGGCTGGGAGCAGCAACCAGCGTTTCGTGCC
CCCCCCAAGCGTAATGACTCGCAGGGCCGAGCACGGGGCAGGCGCCGGGA
CGGGTAATGGGGAGGTTGCGCGGGGAGCGGGGGGCAAGGGTGCCGGTGCA
CCGGGGTACTGA
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