mRNA_S-dermatodea_contig122.1375.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig122.1375.1 vs. uniprot
Match: D7G748_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G748_ECTSI) HSP 1 Score: 219 bits (558), Expect = 7.200e-67 Identity = 103/139 (74.10%), Postives = 113/139 (81.29%), Query Frame = 2
Query: 152 HGAPEAGMECACCYDDIDGE---NYVEYCTGEGKEWLTSLFCEMCVTILTKRQWPIYEETLAKANCKAQQKRMLGEGPPTHVHDKKALPCPDGESVHSLWFMRD--GE--VHSALLEGAPQGEARQIWWDEKLAFQFEE 547
HG GMECACC+DDI+G NYVEY TGEGKEW S FC+MC+ +L K QW IYE+TLAKA CKAQQKRMLGEGPPTHVHDK AL C +GESVHSLWF+ D GE + SALLEGAPQGEARQIWWDEKLAFQF+E
Sbjct: 3 HGTCPEGMECACCFDDIEGGTDGNYVEYRTGEGKEWRPSFFCKMCIGVLIKSQWSIYEDTLAKATCKAQQKRMLGEGPPTHVHDKTALKCEEGESVHSLWFVGDEGGEPKIQSALLEGAPQGEARQIWWDEKLAFQFDE 141
BLAST of mRNA_S-dermatodea_contig122.1375.1 vs. uniprot
Match: A0A6V1S1X6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S1X6_HETAK) HSP 1 Score: 164 bits (416), Expect = 6.680e-47 Identity = 72/132 (54.55%), Postives = 87/132 (65.91%), Query Frame = 2
Query: 152 HGAPEAGMECACCYDDIDGENYVEYCTGEGKEWLTSLFCEMCVTILTKRQWPIYEETLAKANCKAQQKRMLGEGPPTHVHDKKALPCPDGESVHSLWFMRDGEVHSALLEGAPQGEARQIWWDEKLAFQFEE 547
H +PE G EC CCYDD+D NYVEY E EWL + FC+ CV L Q+ I+ L +NCKA+Q+RML EGPP +V DK AL CPDG V LW+ D HSA L+G+ +G+ RQ WWDEK AF FEE
Sbjct: 3 HNSPEDGAECLCCYDDVDSSNYVEYKASEDGEWLPAKFCQTCVNQLLANQYHIWVNKLETSNCKAEQRRMLKEGPPVNVKDKTALECPDGSEVFRLWYSSDQAEHSAKLDGSLEGDERQAWWDEKKAFLFEE 134
BLAST of mRNA_S-dermatodea_contig122.1375.1 vs. uniprot
Match: A0A6V1S1X0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S1X0_HETAK) HSP 1 Score: 164 bits (416), Expect = 5.930e-46 Identity = 72/132 (54.55%), Postives = 87/132 (65.91%), Query Frame = 2
Query: 152 HGAPEAGMECACCYDDIDGENYVEYCTGEGKEWLTSLFCEMCVTILTKRQWPIYEETLAKANCKAQQKRMLGEGPPTHVHDKKALPCPDGESVHSLWFMRDGEVHSALLEGAPQGEARQIWWDEKLAFQFEE 547
H +PE G EC CCYDD+D NYVEY E EWL + FC+ CV L Q+ I+ L +NCKA+Q+RML EGPP +V DK AL CPDG V LW+ D HSA L+G+ +G+ RQ WWDEK AF FEE
Sbjct: 3 HNSPEDGAECLCCYDDVDSSNYVEYKASEDGEWLPAKFCQTCVNQLLANQYHIWVNKLETSNCKAEQRRMLKEGPPVNVKDKTALECPDGSEVFRLWYSSDQAEHSAKLDGSLEGDERQAWWDEKKAFLFEE 134
BLAST of mRNA_S-dermatodea_contig122.1375.1 vs. uniprot
Match: A0A835Z5F2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5F2_9STRA) HSP 1 Score: 156 bits (394), Expect = 9.650e-44 Identity = 69/132 (52.27%), Postives = 86/132 (65.15%), Query Frame = 2
Query: 152 HGAPEAGMECACCYDDIDGENYVEYCTGEGKEWLTSLFCEMCVTILTKRQWPIYEETLAKANCKAQQKRMLGEGPPTHVHDKKALPCPDGESVHSLWFMRDGEVHSALLEGAPQGEARQIWWDEKLAFQFEE 547
H AP G EC C DDID E YVEY G G W FC CV L QW Y + LAKA+CKA+Q+R+L GPP ++D+ LPCP+G+ V LW+ RD + +SA L GA +G+AR+ WWDEKL F+FEE
Sbjct: 7 HSAPAEGKECMVCMDDIDMEKYVEYRVGAGGPWKPCGFCVTCVETLLATQWQKYVDQLAKASCKAEQRRLLDRGPPITIYDRNGLPCPEGQDVDMLWYGRDKQEYSAKLAGALEGQARRDWWDEKLQFKFEE 138
BLAST of mRNA_S-dermatodea_contig122.1375.1 vs. uniprot
Match: A0A482SR23_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SR23_9ARCH) HSP 1 Score: 119 bits (298), Expect = 1.470e-29 Identity = 52/127 (40.94%), Postives = 74/127 (58.27%), Query Frame = 2
Query: 161 PEAGMECACCYDDIDGENYVEYCT---------GEGKEWLTSLFCEMCVTILTKRQWPIYEETLAKANCKAQQKRMLGEGPPTHVHDKKALPCPDGESVHSLWFMRDGEVHSALLEGAPQGEARQIW 514
P+ + CA C++DI NYVEY + +W S FC+ C++ L + QW +Y + L K CKA+Q+R+L GPP ++ D +ALPCPD V LW+M DG+ HSA L G+ GE I+
Sbjct: 7 PDPSVNCASCWEDISAANYVEYLPFPNNDQTVGADATDWKMSKFCQDCISYLLQTQWKLYTDALVKTTCKAEQRRLLERGPPINLRDDEALPCPDKGEVMMLWYMSDGQEHSAKLAGSLVGEVSTIF 133
BLAST of mRNA_S-dermatodea_contig122.1375.1 vs. uniprot
Match: H3GUC0_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GUC0_PHYRM) HSP 1 Score: 110 bits (275), Expect = 3.960e-26 Identity = 53/130 (40.77%), Postives = 78/130 (60.00%), Query Frame = 2
Query: 143 MAKHGAPEAGMECACCYDDIDGE--NYVEYCTGEGKEWLTSLFCEMCVTILTKRQWPIYEETLAKANCKAQQKRMLGEGPPTHVHDKKALPCPDGES-VHSLWFMRDGEVHSALLEGAPQGEARQIWWDE 523
MA HG P AG+EC DDI E N+ E+ T W +LFC V L Q+ Y + + +A+CKA+ +R++ +GPP + DK ALP P+G++ + +WF +D E SA L+GA +G+AR + W E
Sbjct: 1 MATHGKPPAGLECMATMDDITEEDNNFCEFQTSPSGSWHAALFCVDVVEQLLATQFHTYMKKVQEADCKAELRRLVAKGPPVWLEDKHALPVPEGDTHITKVWFAKDEEERSAKLDGAVEGQARDVLWKE 130
BLAST of mRNA_S-dermatodea_contig122.1375.1 vs. uniprot
Match: A0A3M6VP44_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VP44_9STRA) HSP 1 Score: 104 bits (260), Expect = 6.170e-24 Identity = 50/130 (38.46%), Postives = 75/130 (57.69%), Query Frame = 2
Query: 143 MAKHGAPEAGMECACCYDDIDGEN--YVEYCTGEGKEWLTSLFCEMCVTILTKRQWPIYEETLAKANCKAQQKRMLGEGPPTHVHDKKALPCPDGES-VHSLWFMRDGEVHSALLEGAPQGEARQIWWDE 523
M HG P +EC DDI EN Y E+ T W +LFC V L Q+ + + + + +CKA+ +R++ +GPP + DK ALP P+G++ + +WF RD E SA L+GA +G+AR + W+E
Sbjct: 1 MPTHGKPHVNLECMATMDDITEENGNYCEFQTFPSGSWHAALFCSDVVKQLLATQFHTFMKKVQETDCKAELRRLVAKGPPIWLEDKHALPLPEGDTHITHVWFARDDEERSAKLDGAVEGKARDVLWEE 130
BLAST of mRNA_S-dermatodea_contig122.1375.1 vs. uniprot
Match: A0A4D9CWP6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWP6_9STRA) HSP 1 Score: 100 bits (248), Expect = 4.630e-22 Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = 2
Query: 152 HGAPEAGMECACCYDDIDGENYVEYCTGEGK--EWLTSLFCEMCVTILTKRQWPIYEETLAKANCKAQQKRMLGEGPPTHVHDKKALPCPDGESVHSLWFMRDGEVHSALLEGAPQGEARQIWWDEKLAFQ 538
HG P EC C DD+ NY EY T G+ + CE Q+ Y+ + + C A+ +R+L +GPP + D KA P P+ VHSLW+M+DG VHSA L+GA +G AR +W++ FQ
Sbjct: 8 HGTPGDSSECQVCMDDLSAANYAEYRTSAGELGKEKGGGRCES--------QFHDYKRMVENSKCAAEFRRLLHKGPPVTLRDAKAFPGPNDGEVHSLWYMKDGAVHSAKLKGALEGAARLQYWEQLRKFQ 130 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig122.1375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig122.1375.1 >prot_S-dermatodea_contig122.1375.1 ID=prot_S-dermatodea_contig122.1375.1|Name=mRNA_S-dermatodea_contig122.1375.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=236bp MAKHGAPEAGMECACCYDDIDGENYVEYCTGEGKEWLTSLFCEMCVTILTback to top mRNA from alignment at S-dermatodea_contig122:25370..29933+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig122.1375.1 ID=mRNA_S-dermatodea_contig122.1375.1|Name=mRNA_S-dermatodea_contig122.1375.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4564bp|location=Sequence derived from alignment at S-dermatodea_contig122:25370..29933+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig122:25370..29933+ >mRNA_S-dermatodea_contig122.1375.1 ID=mRNA_S-dermatodea_contig122.1375.1|Name=mRNA_S-dermatodea_contig122.1375.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1416bp|location=Sequence derived from alignment at S-dermatodea_contig122:25370..29933+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |