mRNA_S-dermatodea_contig12196.1372.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12196.1372.1
Unique NamemRNA_S-dermatodea_contig12196.1372.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12196.1372.1 vs. uniprot
Match: D7G4B8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B8_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 3.600e-9
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    4 SLSKAEGQRKLSQILTDKRKKASNPRARDPIGLLRAQRNGTLNE 135
            ++SKAEGQRKLSQIL+ KRK+       DP+GLLRAQRNGTLNE
Sbjct:    3 TISKAEGQRKLSQILSSKRKE-------DPVGLLRAQRNGTLNE 39
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BLAST of mRNA_S-dermatodea_contig12196.1372.1 vs. uniprot
Match: A0A6H5KRQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRQ3_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.330e-7
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    4 SLSKAEGQRKLSQILTDKRKKASNPRARDPIGLLRAQRNGTLNE 135
            ++SKAEGQRKLSQIL+ KRK+       DP+GLLRAQRNGTLNE
Sbjct:    3 TISKAEGQRKLSQILSSKRKE-------DPVGLLRAQRNGTLNE 39
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12196.1372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4B8_ECTSI3.600e-970.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRQ3_9PHAE1.330e-770.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12196contigS-dermatodea_contig12196:3228..3987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_002100.1
Exons2
Model size135
Cds size135
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924236.327677-CDS-S-dermatodea_contig12196:3227..33141622924236.327677-CDS-S-dermatodea_contig12196:3227..3314Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12196 3228..3314 +
1694079114.8076847-CDS-S-dermatodea_contig12196:3227..33141694079114.8076847-CDS-S-dermatodea_contig12196:3227..3314Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12196 3228..3314 +
1622924236.3363924-CDS-S-dermatodea_contig12196:3939..39871622924236.3363924-CDS-S-dermatodea_contig12196:3939..3987Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12196 3940..3987 +
1694079114.8165205-CDS-S-dermatodea_contig12196:3939..39871694079114.8165205-CDS-S-dermatodea_contig12196:3939..3987Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12196 3940..3987 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12196.1372.1prot_S-dermatodea_contig12196.1372.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12196 3228..3987 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12196.1372.1

>prot_S-dermatodea_contig12196.1372.1 ID=prot_S-dermatodea_contig12196.1372.1|Name=mRNA_S-dermatodea_contig12196.1372.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=45bp
MSLSKAEGQRKLSQILTDKRKKASNPRARDPIGLLRAQRNGTLNE
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mRNA from alignment at S-dermatodea_contig12196:3228..3987+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12196.1372.1 ID=mRNA_S-dermatodea_contig12196.1372.1|Name=mRNA_S-dermatodea_contig12196.1372.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=760bp|location=Sequence derived from alignment at S-dermatodea_contig12196:3228..3987+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGCCTCAGTAAAGCAGAAGGACAACGAAAACTCAGCCAGATCCTCAC
GGACAAGCGGAAGAAGGCAAGCAATCCGAGAGCGCGCGTCCGGCCGCTGG
GCCTCTCGCGTTTGTCTGTCTTGACTTGCTTGTGTCTGTGTTTCAGAGAT
ATCATACCAGAGAGAAGGAAGGAGCTATCATACTTGTTGTATACTGGTAT
GTATATGTTTGGCTGAAAACTGAAATATCCCCGCGCAGACAGAGTGCAGC
GTTTGTTCCGCGAGTCTTGGTTTTGAGTTTTGAGAGTCCACTCGTCATCC
ATCACTCGTCAAACACTGTGTGCATACACCAGCGCCGGTCGCCAGCCCCT
CTAGCGCGCAACCATCTCCAAACGAGGCCAGGGAGCGATGCCAGCAACCA
GAGACTACTCTGGAGCCCACCGCGGCCGGCCGGAGCCGGTGCTGTCACTA
CACCGCGAAGCACGACACGGCGAGCTGTCTATGTTTTTTTGTGGGCAAAC
AAACAACCCGCGCGCACCTCTGTGCACAAAAATCAATATATTTGTCCCCC
CCCCGCCTTGCCTCAATACCAACACACACAAACACCAGACACACAGACAC
ATGGTGATCGATCAATCTCTGCCGTCGGGTTCCGACCCCAGCTCTCCCGT
ATGTCAAGGTTTTGAGCACATCCTGCGCCCCCACTCTGTCACACTGCTCC
GTGGAACCTCAGGACCCCATTGGCCTCCTGCGCGCTCAGCGGAACGGAAC
GCTCAACGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12196:3228..3987+

>mRNA_S-dermatodea_contig12196.1372.1 ID=mRNA_S-dermatodea_contig12196.1372.1|Name=mRNA_S-dermatodea_contig12196.1372.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at S-dermatodea_contig12196:3228..3987+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGCCTCAGTAAAGCAGAAGGACAACGAAAACTCAGCCAGATCCTCAC
GGACAAGCGGAAGAAGGCAAGCAATCCGAGAGCGCGCATGAGCCTCAGTA
AAGCAGAAGGACAACGAAAACTCAGCCAGATCCTCACGGACAAGCGGAAG
AAGGCAAGCAATCCGAGAGCGCGCGACCCCATTGGCCTCCTGCGCGCTCA
GCGGAACGGAACGCTCAACGAGGACCCCATTGGCCTCCTGCGCGCTCAGC
GGAACGGAACGCTCAACGAG
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