mRNA_S-dermatodea_contig12184.1365.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12184.1365.1
Unique NamemRNA_S-dermatodea_contig12184.1365.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12184.1365.1 vs. uniprot
Match: D7FWT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT6_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 8.150e-14
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 QLDQDIHASVKQSEYVSAIHDNAEKFDPRAEEAFKYVQ 114
            Q++QDIH S K S+YVS+IHDNAEKFDPRAEEAFKYVQ
Sbjct:    3 QMNQDIHFSAKHSQYVSSIHDNAEKFDPRAEEAFKYVQ 40
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BLAST of mRNA_S-dermatodea_contig12184.1365.1 vs. uniprot
Match: A0A6H5JNE7_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE7_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.850e-13
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 QLDQDIHASVKQSEYVSAIHDNAEKFDPRAEEAFKYVQV 117
            Q++QDIH+SVK SEYVS IHDNAEKFDPRAEEAFKYVQV
Sbjct:  297 QMNQDIHSSVKDSEYVSQIHDNAEKFDPRAEEAFKYVQV 335
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BLAST of mRNA_S-dermatodea_contig12184.1365.1 vs. uniprot
Match: D7G0K9_ECTSI (Phosphate transporter n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K9_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 8.830e-13
Identity = 32/39 (82.05%), Postives = 38/39 (97.44%), Query Frame = 1 
Query:    1 QLDQDIHASVKQSEYVSAIHDNAEKFDPRAEEAFKYVQV 117
            QL++D+H+SVK+SEYVS IHDNAE+FDPRAEEAFKYVQV
Sbjct:  298 QLNKDVHSSVKESEYVSQIHDNAEQFDPRAEEAFKYVQV 336
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BLAST of mRNA_S-dermatodea_contig12184.1365.1 vs. uniprot
Match: A0A6H5JNL8_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNL8_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.630e-12
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    1 QLDQDIHASVKQSEYVSAIHDNAEKFDPRAEEAFKYVQV 117
            Q++QDIH+SVK S YVS IHDNAEKFDPRAEEAFKYVQV
Sbjct:  241 QINQDIHSSVKDSGYVSQIHDNAEKFDPRAEEAFKYVQV 279
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BLAST of mRNA_S-dermatodea_contig12184.1365.1 vs. uniprot
Match: D7FWT9_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT9_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 5.120e-11
Identity = 29/39 (74.36%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 QLDQDIHASVKQSEYVSAIHDNAEKFDPRAEEAFKYVQV 117
            Q++QDI++SVK SEYV+ IHDNAEKFDPR EE FKYVQ+
Sbjct:  308 QMNQDIYSSVKDSEYVNQIHDNAEKFDPRTEEVFKYVQI 346
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BLAST of mRNA_S-dermatodea_contig12184.1365.1 vs. uniprot
Match: D7FZJ7_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ7_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.310e-10
Identity = 28/39 (71.79%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 QLDQDIHASVKQSEYVSAIHDNAEKFDPRAEEAFKYVQV 117
            QLDQD+HA+VK ++YV AIH+NAE+ DPR E+AFKYVQV
Sbjct:  298 QLDQDVHATVKDNDYVDAIHENAERSDPRTEQAFKYVQV 336
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BLAST of mRNA_S-dermatodea_contig12184.1365.1 vs. uniprot
Match: A0A1Q1NHC6_MARPO (Phosphate transporter n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A1Q1NHC6_MARPO)

HSP 1 Score: 49.3 bits (116), Expect = 1.400e-5
Identity = 21/35 (60.00%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:   13 DIHASVKQSEYVSAIHDNAEKFDPRAEEAFKYVQV 117
            DIH SVK+ E + A+H+NAE+F+PR E AF Y+QV
Sbjct:  347 DIHKSVKEDEVLDAMHENAERFEPRVEYAFSYLQV 381
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BLAST of mRNA_S-dermatodea_contig12184.1365.1 vs. uniprot
Match: A0A061QS79_9CHLO (Phosphate transporter (Fragment) n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QS79_9CHLO)

HSP 1 Score: 48.1 bits (113), Expect = 3.580e-5
Identity = 18/35 (51.43%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:   13 DIHASVKQSEYVSAIHDNAEKFDPRAEEAFKYVQV 117
            D+H+++++ + V+AIH+ +EKFDP+ EE+FKY+QV
Sbjct:  316 DVHSAIEEDDAVNAIHEFSEKFDPKTEESFKYLQV 350
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BLAST of mRNA_S-dermatodea_contig12184.1365.1 vs. uniprot
Match: D8LJQ6_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ6_ECTSI)

HSP 1 Score: 48.1 bits (113), Expect = 3.580e-5
Identity = 23/39 (58.97%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    7 DQDIHASVKQSEYVSAIHDNAEKFDPRAEEAFKYVQVSN 123
            +++IHA +   E V AIH +AE+FDPRAEE FKYVQV++
Sbjct:  271 ERNIHAYLDTYEEVVAIHSSAEQFDPRAEEVFKYVQVTS 309
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BLAST of mRNA_S-dermatodea_contig12184.1365.1 vs. uniprot
Match: A0A0D2MVW7_9CHLO (Phosphate transporter n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MVW7_9CHLO)

HSP 1 Score: 47.8 bits (112), Expect = 4.900e-5
Identity = 21/35 (60.00%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:   13 DIHASVKQSEYVSAIHDNAEKFDPRAEEAFKYVQV 117
            DIH  VK  + + A+HD+AEKFDPR EE FK +QV
Sbjct:  575 DIHDDVKDDQNIMAMHDDAEKFDPRTEEVFKILQV 609
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12184.1365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FWT6_ECTSI8.150e-1481.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNE7_9PHAE1.850e-1387.18Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7G0K9_ECTSI8.830e-1382.05Phosphate transporter n=2 Tax=Ectocarpus siliculos... [more]
A0A6H5JNL8_9PHAE1.630e-1284.62Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7FWT9_ECTSI5.120e-1174.36Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D7FZJ7_ECTSI1.310e-1071.79Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
A0A1Q1NHC6_MARPO1.400e-560.00Phosphate transporter n=3 Tax=Marchantia polymorph... [more]
A0A061QS79_9CHLO3.580e-551.43Phosphate transporter (Fragment) n=2 Tax=Tetraselm... [more]
D8LJQ6_ECTSI3.580e-558.97Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
A0A0D2MVW7_9CHLO4.900e-560.00Phosphate transporter n=1 Tax=Monoraphidium neglec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12184contigS-dermatodea_contig12184:6433..6561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue2.2e-10
Seed eggNOG ortholog2880.D7G0K8
Preferred namePHO89
KEGG koko:K01280,ko:K03306,ko:K14640
KEGG TC2.A.20,2.A.20.2
GOsGO:0003674,GO:0005215,GO:0005315,GO:0005436,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006817,GO:0006820,GO:0008150,GO:0008324,GO:0012505,GO:0015075,GO:0015077,GO:0015081,GO:0015291,GO:0015293,GO:0015294,GO:0015318,GO:0015319,GO:0015370,GO:0015672,GO:0015698,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0034220,GO:0035435,GO:0035725,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098655,GO:0098656,GO:0098660,GO:0098661,GO:0098662
EggNOG free text desc.inorganic phosphate transmembrane transporter activity
EggNOG OGsCOG0306@1,KOG2493@2759
EC3.4.14.10
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko02000,ko03110
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_001230.1
Exons1
Model size129
Cds size129
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924235.5309274-CDS-S-dermatodea_contig12184:6432..65611622924235.5309274-CDS-S-dermatodea_contig12184:6432..6561Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12184 6433..6561 -
1694079114.1565187-CDS-S-dermatodea_contig12184:6432..65611694079114.1565187-CDS-S-dermatodea_contig12184:6432..6561Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12184 6433..6561 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12184.1365.1prot_S-dermatodea_contig12184.1365.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12184 6433..6561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12184.1365.1

>prot_S-dermatodea_contig12184.1365.1 ID=prot_S-dermatodea_contig12184.1365.1|Name=mRNA_S-dermatodea_contig12184.1365.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=43bp
QLDQDIHASVKQSEYVSAIHDNAEKFDPRAEEAFKYVQVSNP*
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mRNA from alignment at S-dermatodea_contig12184:6433..6561-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12184.1365.1 ID=mRNA_S-dermatodea_contig12184.1365.1|Name=mRNA_S-dermatodea_contig12184.1365.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=129bp|location=Sequence derived from alignment at S-dermatodea_contig12184:6433..6561- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCTCGATCAGGACATTCACGCCTCAGTGAAGCAGTCCGAGTACGTGTC
CGCTATCCACGACAACGCTGAGAAGTTCGACCCCCGCGCAGAGGAGGCCT
TCAAGTACGTCCAGGTGAGCAATCCATAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12184:6433..6561-

>mRNA_S-dermatodea_contig12184.1365.1 ID=mRNA_S-dermatodea_contig12184.1365.1|Name=mRNA_S-dermatodea_contig12184.1365.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at S-dermatodea_contig12184:6433..6561- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCTCGATCAGGACATTCACGCCTCAGTGAAGCAGTCCGAGTACGTGTC
CGCTATCCACGACAACGCTGAGAAGTTCGACCCCCGCGCAGAGGAGGCCT
TCAAGTACGTCCAGGTGAGCAATCCATAGCAGCTCGATCAGGACATTCAC
GCCTCAGTGAAGCAGTCCGAGTACGTGTCCGCTATCCACGACAACGCTGA
GAAGTTCGACCCCCGCGCAGAGGAGGCCTTCAAGTACGTCCAGGTGAGCA
ATCCATAG
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