mRNA_S-dermatodea_contig12159.1344.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
|
Overview
Homology
BLAST of mRNA_S-dermatodea_contig12159.1344.1 vs. uniprot
Match: D8LSP0_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSP0_ECTSI) HSP 1 Score: 176 bits (445), Expect = 1.200e-47 Identity = 85/95 (89.47%), Postives = 90/95 (94.74%), Query Frame = 2
Query: 2 ADTMSLFREGKTRLLVSTDMAARGLDVPEITHVFNLDLPPDGEGYVHRGGRAGRLGRPGKIISIVTPAQEFVIRRLGNGIGVDIKRINMGSKSRK 286
AD MSLFREGKTRLLVSTDMAARGLDVPEITHVFNLDLP DGEGYVHRGGRAGRLGRPGK+IS+VTP QEFVIRRLGNGIGVDIK+IN+GS R+
Sbjct: 368 ADAMSLFREGKTRLLVSTDMAARGLDVPEITHVFNLDLPLDGEGYVHRGGRAGRLGRPGKVISLVTPQQEFVIRRLGNGIGVDIKKINLGSSRRR 462
BLAST of mRNA_S-dermatodea_contig12159.1344.1 vs. uniprot
Match: A0A6H5KF38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF38_9PHAE) HSP 1 Score: 176 bits (445), Expect = 3.690e-46 Identity = 85/95 (89.47%), Postives = 90/95 (94.74%), Query Frame = 2
Query: 2 ADTMSLFREGKTRLLVSTDMAARGLDVPEITHVFNLDLPPDGEGYVHRGGRAGRLGRPGKIISIVTPAQEFVIRRLGNGIGVDIKRINMGSKSRK 286
AD MSLFREGKTRLLVSTDMAARGLDVPEITHVFNLDLP DGEGYVHRGGRAGRLGRPGK+IS+VTP QEFVIRRLGNGIGVDIK+IN+GS R+
Sbjct: 602 ADAMSLFREGKTRLLVSTDMAARGLDVPEITHVFNLDLPLDGEGYVHRGGRAGRLGRPGKVISLVTPQQEFVIRRLGNGIGVDIKKINLGSSRRR 696
BLAST of mRNA_S-dermatodea_contig12159.1344.1 vs. uniprot
Match: R7Q285_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q285_CHOCR) HSP 1 Score: 110 bits (275), Expect = 7.950e-24 Identity = 45/84 (53.57%), Postives = 65/84 (77.38%), Query Frame = 2
Query: 11 MSLFREGKTRLLVSTDMAARGLDVPEITHVFNLDLPPDGEGYVHRGGRAGRLGRPGKIISIVTPAQEFVIRRLGNGIGVDIKRI 262
M FR+G ++L++TD+AARGLD+P+++HVF+LDLP D + Y+HR GR GR GRPG + +VTP ++FVI R GN +G+D R+
Sbjct: 309 MKRFRDGDAKVLIATDVAARGLDIPDVSHVFHLDLPTDPDSYLHRSGRTGRQGRPGSSVVLVTPGEQFVISRTGNALGIDFHRV 392
BLAST of mRNA_S-dermatodea_contig12159.1344.1 vs. uniprot
Match: A0A7S1ZBD4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZBD4_TRICV) HSP 1 Score: 103 bits (258), Expect = 8.330e-24 Identity = 44/73 (60.27%), Postives = 62/73 (84.93%), Query Frame = 2
Query: 38 RLLVSTDMAARGLDVPEITHVFNLDLPPDGEGYVHRGGRAGRLGRPGKIISIVTPAQEFVIRRLGNGIGVDIK 256
R+++STD+AARGLDV +++HV N DLP +G+ YVHRGGRAGRLGR GK++S++T QEFV+ RL N +G+++K
Sbjct: 40 RIMLSTDLAARGLDVSDVSHVINYDLPNNGDTYVHRGGRAGRLGRKGKVLSLITAEQEFVLERLANKLGLEVK 112
BLAST of mRNA_S-dermatodea_contig12159.1344.1 vs. uniprot
Match: A0A835Z5K4_9STRA (DEAD box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5K4_9STRA) HSP 1 Score: 111 bits (278), Expect = 1.060e-23 Identity = 52/102 (50.98%), Postives = 73/102 (71.57%), Query Frame = 2
Query: 2 ADTMSLFREGKTRLLVSTDMAARGLDVPEITHVFNLDLPPDGEGYVHRGGRAGRLGRPGKIISIVTPAQEFVIRRLGNGIGVDIKRINM--GSKSRKVSPTA 301
AD ++ +R G R+L++TD+AARGLDVPE THVF+ DLP D EGY+HRGGRA ++SIVTP QEFV++RL N +GV++ ++ G+ + V+P A
Sbjct: 434 ADAVARYRAGAARVLLTTDLAARGLDVPETTHVFHFDLPADAEGYIHRGGRAXXXXXXXXVVSIVTPEQEFVLQRLANAVGVEVAQLGKAAGAGTAVVAPAA 535
BLAST of mRNA_S-dermatodea_contig12159.1344.1 vs. uniprot
Match: A0A7S0PHC9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0PHC9_9STRA) HSP 1 Score: 100 bits (250), Expect = 8.910e-23 Identity = 46/84 (54.76%), Postives = 62/84 (73.81%), Query Frame = 2
Query: 41 LLVSTDMAARGLDVPEITHVFNLDLPPDGEGYVHRGGRAGRLGRPGKIISIVTPAQEFVIRRLGNGIGVDIKRINMGSKSRKVS 292
+++STD+AARGLDV +I+HV N DLP DG+ YVHRGGR GRLGR G +IS +T QEFV+ RL N + +D++ I + K+S
Sbjct: 34 IMISTDLAARGLDVLDISHVINFDLPNDGDTYVHRGGRTGRLGRSGNVISFITEDQEFVLERLANKLQLDVQCIARQKRGGKIS 117
BLAST of mRNA_S-dermatodea_contig12159.1344.1 vs. uniprot
Match: A0A7S0GHU5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GHU5_9STRA) HSP 1 Score: 101 bits (252), Expect = 1.350e-22 Identity = 41/71 (57.75%), Postives = 60/71 (84.51%), Query Frame = 2
Query: 38 RLLVSTDMAARGLDVPEITHVFNLDLPPDGEGYVHRGGRAGRLGRPGKIISIVTPAQEFVIRRLGNGIGVD 250
R+L+STD+AARG+DV ++THV + DLPPD + Y+HRGGRAGR+G+ G ++S++T QEFV+ RLGN +G++
Sbjct: 80 RILLSTDLAARGIDVVDVTHVIHFDLPPDSDAYIHRGGRAGRMGKTGTVVSLITSDQEFVLERLGNQLGLN 150
BLAST of mRNA_S-dermatodea_contig12159.1344.1 vs. uniprot
Match: A0A7S3VGM2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VGM2_9STRA) HSP 1 Score: 108 bits (269), Expect = 1.700e-22 Identity = 51/87 (58.62%), Postives = 66/87 (75.86%), Query Frame = 2
Query: 26 EGKTRLLVSTDMAARGLDVPEITHVFNLDLPPDGEGYVHRGGRAGRLGRPGKIISIVTPAQEFVIRRLGNGIGVDIKRINMGSKSRK 286
+G R+L+STD+AARGLD+ +ITHV N DLP +G+ YVHRGGRAGRLGR G ++S++T QEFV+ RL N +G+DIK I K K
Sbjct: 451 KGDLRILLSTDIAARGLDISDITHVINFDLPHEGDIYVHRGGRAGRLGRKGLVMSLITHEQEFVLERLANKLGLDIKCIARQQKGAK 537
BLAST of mRNA_S-dermatodea_contig12159.1344.1 vs. uniprot
Match: A0A7S2KZV0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KZV0_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 1.110e-21 Identity = 47/89 (52.81%), Postives = 64/89 (71.91%), Query Frame = 2
Query: 26 EGKTRLLVSTDMAARGLDVPEITHVFNLDLPPDGEG--YVHRGGRAGRLGRPGKIISIVTPAQEFVIRRLGNGIGVDIKRINMGSKSRK 286
+ K R+L+STD+ ARG+D+P I+ V N DLP D EG YVHRGGRAGRLG GK++S++T QEFV+ RL N + +DI+ + K +K
Sbjct: 84 DDKLRILLSTDLTARGIDIPNISVVINFDLPNDNEGDTYVHRGGRAGRLGSKGKVMSLITADQEFVLERLANKLSLDIRCVARQDKKKK 172
BLAST of mRNA_S-dermatodea_contig12159.1344.1 vs. uniprot
Match: R7QJR1_CHOCR (ATP dependant RNA helicase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJR1_CHOCR) HSP 1 Score: 105 bits (261), Expect = 2.830e-21 Identity = 58/133 (43.61%), Postives = 78/133 (58.65%), Query Frame = 2
Query: 2 ADTMSLFREGKTRLLVSTDMAARGLDVPEITHVFNLDLPPDGEGYVHRGGRAGRLGRPGKIISIVTPAQEFVIRRLGNGIGVDIKRINMGSKSRKVSPTA*LDRRWCLGSGVMLGRCCAV*NEASRT*GEIAG 400
A+ ++ FR+G+ LLV+T++AARGLD+PEI+HVFNLDLP DG+ YVHR GR GR+ G ++SI T FV+RRL +GV I R M + P A R G + + E R G +AG
Sbjct: 458 AEVLTAFRKGRINLLVTTEVAARGLDIPEISHVFNLDLPTDGDHYVHRAGRCGRVRNVGTVVSITTAETAFVMRRLEKELGVSITR--MEPRGGDYGPVASRRRH---GENTDKRKQMEIRGEQQRVEGIVAG 585 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12159.1344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12159.1344.1 >prot_S-dermatodea_contig12159.1344.1 ID=prot_S-dermatodea_contig12159.1344.1|Name=mRNA_S-dermatodea_contig12159.1344.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=98bp MSLFREGKTRLLVSTDMAARGLDVPEITHVFNLDLPPDGEGYVHRGGRAGback to top mRNA from alignment at S-dermatodea_contig12159:1217..3390+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig12159.1344.1 ID=mRNA_S-dermatodea_contig12159.1344.1|Name=mRNA_S-dermatodea_contig12159.1344.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2174bp|location=Sequence derived from alignment at S-dermatodea_contig12159:1217..3390+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig12159:1217..3390+ >mRNA_S-dermatodea_contig12159.1344.1 ID=mRNA_S-dermatodea_contig12159.1344.1|Name=mRNA_S-dermatodea_contig12159.1344.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at S-dermatodea_contig12159:1217..3390+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |