prot_S-dermatodea_contig12159.1344.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig12159.1344.1
Unique Nameprot_S-dermatodea_contig12159.1344.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length98
Homology
BLAST of mRNA_S-dermatodea_contig12159.1344.1 vs. uniprot
Match: D8LSP0_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSP0_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 1.140e-49
Identity = 83/92 (90.22%), Postives = 88/92 (95.65%), Query Frame = 0
Query:    1 MSLFREGKTRLLVSTDMAARGLDVPEITHVFNLDLPPDGEGYVHRGGRAGRLGRPGKIISIVTPAQEFVIRRLGNGIGVDIKRINMGSKSRK 92
            MSLFREGKTRLLVSTDMAARGLDVPEITHVFNLDLP DGEGYVHRGGRAGRLGRPGK+IS+VTP QEFVIRRLGNGIGVDIK+IN+GS  R+
Sbjct:  371 MSLFREGKTRLLVSTDMAARGLDVPEITHVFNLDLPLDGEGYVHRGGRAGRLGRPGKVISLVTPQQEFVIRRLGNGIGVDIKKINLGSSRRR 462          
BLAST of mRNA_S-dermatodea_contig12159.1344.1 vs. uniprot
Match: A0A6H5KF38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF38_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 3.020e-48
Identity = 83/92 (90.22%), Postives = 88/92 (95.65%), Query Frame = 0
Query:    1 MSLFREGKTRLLVSTDMAARGLDVPEITHVFNLDLPPDGEGYVHRGGRAGRLGRPGKIISIVTPAQEFVIRRLGNGIGVDIKRINMGSKSRK 92
            MSLFREGKTRLLVSTDMAARGLDVPEITHVFNLDLP DGEGYVHRGGRAGRLGRPGK+IS+VTP QEFVIRRLGNGIGVDIK+IN+GS  R+
Sbjct:  605 MSLFREGKTRLLVSTDMAARGLDVPEITHVFNLDLPLDGEGYVHRGGRAGRLGRPGKVISLVTPQQEFVIRRLGNGIGVDIKKINLGSSRRR 696          
BLAST of mRNA_S-dermatodea_contig12159.1344.1 vs. uniprot
Match: R7Q285_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q285_CHOCR)

HSP 1 Score: 110 bits (275), Expect = 9.110e-27
Identity = 45/84 (53.57%), Postives = 65/84 (77.38%), Query Frame = 0
Query:    1 MSLFREGKTRLLVSTDMAARGLDVPEITHVFNLDLPPDGEGYVHRGGRAGRLGRPGKIISIVTPAQEFVIRRLGNGIGVDIKRI 84
            M  FR+G  ++L++TD+AARGLD+P+++HVF+LDLP D + Y+HR GR GR GRPG  + +VTP ++FVI R GN +G+D  R+
Sbjct:  309 MKRFRDGDAKVLIATDVAARGLDIPDVSHVFHLDLPTDPDSYLHRSGRTGRQGRPGSSVVLVTPGEQFVISRTGNALGIDFHRV 392          
BLAST of mRNA_S-dermatodea_contig12159.1344.1 vs. uniprot
Match: A0A7S1ZBD4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZBD4_TRICV)

HSP 1 Score: 103 bits (258), Expect = 1.240e-26
Identity = 44/73 (60.27%), Postives = 62/73 (84.93%), Query Frame = 0
Query:   10 RLLVSTDMAARGLDVPEITHVFNLDLPPDGEGYVHRGGRAGRLGRPGKIISIVTPAQEFVIRRLGNGIGVDIK 82
            R+++STD+AARGLDV +++HV N DLP +G+ YVHRGGRAGRLGR GK++S++T  QEFV+ RL N +G+++K
Sbjct:   40 RIMLSTDLAARGLDVSDVSHVINYDLPNNGDTYVHRGGRAGRLGRKGKVLSLITAEQEFVLERLANKLGLEVK 112          
BLAST of mRNA_S-dermatodea_contig12159.1344.1 vs. uniprot
Match: A0A7S0PHC9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0PHC9_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.490e-25
Identity = 46/84 (54.76%), Postives = 62/84 (73.81%), Query Frame = 0
Query:   11 LLVSTDMAARGLDVPEITHVFNLDLPPDGEGYVHRGGRAGRLGRPGKIISIVTPAQEFVIRRLGNGIGVDIKRINMGSKSRKVS 94
            +++STD+AARGLDV +I+HV N DLP DG+ YVHRGGR GRLGR G +IS +T  QEFV+ RL N + +D++ I    +  K+S
Sbjct:   34 IMISTDLAARGLDVLDISHVINFDLPNDGDTYVHRGGRTGRLGRSGNVISFITEDQEFVLERLANKLQLDVQCIARQKRGGKIS 117          
BLAST of mRNA_S-dermatodea_contig12159.1344.1 vs. uniprot
Match: A0A7S3VGM2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VGM2_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.980e-25
Identity = 51/87 (58.62%), Postives = 66/87 (75.86%), Query Frame = 0
Query:    6 EGKTRLLVSTDMAARGLDVPEITHVFNLDLPPDGEGYVHRGGRAGRLGRPGKIISIVTPAQEFVIRRLGNGIGVDIKRINMGSKSRK 92
            +G  R+L+STD+AARGLD+ +ITHV N DLP +G+ YVHRGGRAGRLGR G ++S++T  QEFV+ RL N +G+DIK I    K  K
Sbjct:  451 KGDLRILLSTDIAARGLDISDITHVINFDLPHEGDIYVHRGGRAGRLGRKGLVMSLITHEQEFVLERLANKLGLDIKCIARQQKGAK 537          
BLAST of mRNA_S-dermatodea_contig12159.1344.1 vs. uniprot
Match: A0A7S0GHU5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GHU5_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.180e-25
Identity = 41/71 (57.75%), Postives = 60/71 (84.51%), Query Frame = 0
Query:   10 RLLVSTDMAARGLDVPEITHVFNLDLPPDGEGYVHRGGRAGRLGRPGKIISIVTPAQEFVIRRLGNGIGVD 80
            R+L+STD+AARG+DV ++THV + DLPPD + Y+HRGGRAGR+G+ G ++S++T  QEFV+ RLGN +G++
Sbjct:   80 RILLSTDLAARGIDVVDVTHVIHFDLPPDSDAYIHRGGRAGRMGKTGTVVSLITSDQEFVLERLGNQLGLN 150          
BLAST of mRNA_S-dermatodea_contig12159.1344.1 vs. uniprot
Match: A0A835Z5K4_9STRA (DEAD box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5K4_9STRA)

HSP 1 Score: 107 bits (268), Expect = 2.710e-25
Identity = 50/96 (52.08%), Postives = 69/96 (71.88%), Query Frame = 0
Query:    4 FREGKTRLLVSTDMAARGLDVPEITHVFNLDLPPDGEGYVHRGGRAGRLGRPGKIISIVTPAQEFVIRRLGNGIGVDIKRINM--GSKSRKVSPTA 97
            +R G  R+L++TD+AARGLDVPE THVF+ DLP D EGY+HRGGRA        ++SIVTP QEFV++RL N +GV++ ++    G+ +  V+P A
Sbjct:  440 YRAGAARVLLTTDLAARGLDVPETTHVFHFDLPADAEGYIHRGGRAXXXXXXXXVVSIVTPEQEFVLQRLANAVGVEVAQLGKAAGAGTAVVAPAA 535          
BLAST of mRNA_S-dermatodea_contig12159.1344.1 vs. uniprot
Match: A0A7S2KZV0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KZV0_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.930e-24
Identity = 47/89 (52.81%), Postives = 64/89 (71.91%), Query Frame = 0
Query:    6 EGKTRLLVSTDMAARGLDVPEITHVFNLDLPPDGEG--YVHRGGRAGRLGRPGKIISIVTPAQEFVIRRLGNGIGVDIKRINMGSKSRK 92
            + K R+L+STD+ ARG+D+P I+ V N DLP D EG  YVHRGGRAGRLG  GK++S++T  QEFV+ RL N + +DI+ +    K +K
Sbjct:   84 DDKLRILLSTDLTARGIDIPNISVVINFDLPNDNEGDTYVHRGGRAGRLGSKGKVMSLITADQEFVLERLANKLSLDIRCVARQDKKKK 172          
BLAST of mRNA_S-dermatodea_contig12159.1344.1 vs. uniprot
Match: A0A2V3INY2_9FLOR (DEAD-box ATP-dependent RNA helicase 58, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INY2_9FLOR)

HSP 1 Score: 104 bits (259), Expect = 4.150e-24
Identity = 43/84 (51.19%), Postives = 63/84 (75.00%), Query Frame = 0
Query:    1 MSLFREGKTRLLVSTDMAARGLDVPEITHVFNLDLPPDGEGYVHRGGRAGRLGRPGKIISIVTPAQEFVIRRLGNGIGVDIKRI 84
            ++ FREG  ++L+ TD+AARGLDVP+I+HVF+ DLP D + Y+HR GR GR GRPG  + ++TP ++FVI R+ N + +  +RI
Sbjct:  418 LNAFREGSAKVLIGTDVAARGLDVPDISHVFHFDLPTDSDAYLHRAGRTGRQGRPGTSVVLLTPGEQFVISRISNSLSIRFERI 501          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12159.1344.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSP0_ECTSI1.140e-4990.22DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KF38_9PHAE3.020e-4890.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
R7Q285_CHOCR9.110e-2753.57Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S1ZBD4_TRICV1.240e-2660.27Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S0PHC9_9STRA1.490e-2554.76Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S3VGM2_9STRA1.980e-2558.62Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S0GHU5_9STRA2.180e-2557.75Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A835Z5K4_9STRA2.710e-2552.08DEAD box helicase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A7S2KZV0_9STRA1.930e-2452.81Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A2V3INY2_9FLOR4.150e-2451.19DEAD-box ATP-dependent RNA helicase 58, chloroplas... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 1..53
e-value: 2.9E-4
score: 30.2
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 2..53
e-value: 3.2E-15
score: 56.4
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 1..92
score: 14.796
NoneNo IPR availableGENE3D3.40.50.300coord: 1..97
e-value: 1.4E-28
score: 102.0
NoneNo IPR availablePANTHERPTHR24031:SF650coord: 2..82
NoneNo IPR availablePANTHERPTHR24031RNA HELICASEcoord: 2..82
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..85

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12159contigS-dermatodea_contig12159:1227..2711 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12159.1344.1mRNA_S-dermatodea_contig12159.1344.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig12159 1217..3390 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig12159.1344.1 ID=prot_S-dermatodea_contig12159.1344.1|Name=mRNA_S-dermatodea_contig12159.1344.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=98bp
MSLFREGKTRLLVSTDMAARGLDVPEITHVFNLDLPPDGEGYVHRGGRAG
RLGRPGKIISIVTPAQEFVIRRLGNGIGVDIKRINMGSKSRKVSPTA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR027417P-loop_NTPase