mRNA_S-dermatodea_contig12157.1343.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig12157.1343.1 vs. uniprot
Match: D7FJ41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ41_ECTSI) HSP 1 Score: 584 bits (1505), Expect = 1.210e-201 Identity = 332/453 (73.29%), Postives = 371/453 (81.90%), Query Frame = 1
Query: 76 MNLFGRETDSEAKMEARAKRKRKGRQEMEDAAARETLRKSREERLERXLEDSGAGES-----EGEQDGGILVSMAAGALKAVGGTASAPTPP-------DDNRLWLDVAEGMIGAMSLAMTSLYPVWHALQAMFGLSLLFYGQEFATLAFHIIVFRLSGWKKAAKSKDELVAYYKKARHAMTKAAKDVRTSATLIARKDKLXXXXXXXXXEKKRLHKIGRVSAGEARAFIDKYRNEIEIIAREQEALATASSSILAIKGALSFKKLAASMNSLYAALVTSITASTFKRAGQLTLALTCGGLIKRTLFDLLGPVIDPIGYQIELETYVANIMRGPANLYITLVGYLGAASMFFHFFVDPHQALTITFVLLGARVVTDYIVAALNPVRWRFGMSKKLDNMPLSATIYLILATLGFAFHEDAGVIGDYVCKPFIAFLGVLNKMLNHFQISTISYFS 1398
+++FG D+EAK RK +QE EDA AR+ LRK+REERLER LE+SGA E + + GGILVSMA P P D RLWLDV E ++SLA++SLYP+WH L+ MFGLSLLFYG++FATLAFHI+VFR+SGWKKAAKSKDELVAYYKKAR MTKAAKDVR SA +IARKD+ XXXXXXXXX H IGRVSA EARAFIDKYRN+IEIIAREQE LA SSSILAIKGALSFKKLAAS+NSLYAA++TSITASTFKRAGQLTLALTCGGLIKR LFDLLGPVIDPIGYQIELETYVANIMRGPANLYITL GY+ +AS+FFHFFVDP QALTITFVLLGARVVTDYIVAALNPVRWRFGMSKKLDNMP+SA IYL+LA+LGF FH +AG++GD+ CKPFIAFLG+LNK LNHFQ +TI+YFS
Sbjct: 3 LSVFGWGGDNEAK--------RKAKQEAEDAEARDALRKAREERLERELEESGAAEEAENVGDDKTAGGILVSMAK------------PAEPVRQVALLSDKRLWLDVVEPFFASVSLAISSLYPLWHTLRGMFGLSLLFYGEDFATLAFHIVVFRISGWKKAAKSKDELVAYYKKARQTMTKAAKDVRASAAIIARKDRXXXXXXXXXXXXXXXHAIGRVSAEEARAFIDKYRNDIEIIAREQEVLAETSSSILAIKGALSFKKLAASVNSLYAAVITSITASTFKRAGQLTLALTCGGLIKRALFDLLGPVIDPIGYQIELETYVANIMRGPANLYITLAGYVSSASVFFHFFVDPQQALTITFVLLGARVVTDYIVAALNPVRWRFGMSKKLDNMPISAVIYLLLASLGFIFHGNAGLVGDFACKPFIAFLGLLNKGLNHFQATTITYFS 435
BLAST of mRNA_S-dermatodea_contig12157.1343.1 vs. uniprot
Match: A0A835YUQ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUQ5_9STRA) HSP 1 Score: 258 bits (658), Expect = 2.690e-75 Identity = 146/350 (41.71%), Postives = 221/350 (63.14%), Query Frame = 1
Query: 349 LWLDVAEGMIGAMSLAMTSLYPVWHALQAMFGLSLLFYGQEFATLAFHIIVFRLSGWKKAAKSKDELVAYYKKARHAMTKAAKDVRTSATLIARKDKLXXXXXXXXXEKKRLHKIGRVSAGEARAFIDKYRNEIEIIAREQEALATASSSILAIKGALSFKKLAASMNSLYAALVTSITASTFKRAGQLTLALTCGGLIKRTLFDLLGPVIDPIGYQIELETYVANIMRGPANLYITLVGYLGAASMFFHFFVDPHQALTITFVLLGARVVTDYIVAALNPVRWRFGMSKKLDNMPLSATIYLILATLGFAFHEDAGVIGDYVCKPFIAFLGVLNKMLNHFQISTISYFS 1398
LWLD AE ++ +A+++L PVW ++ +FG+S+LFYG F T+AFHII+FR+SG+K K +LV++YKKAR A AA+ + +A++ +++ + + GR++A EAR FI ++R EI IA +Q+ LA ASSSI+A++ A+ +K L+ ++ LYAALVTS+TASTFK AG+ T+AL CG ++KR + LLGP IDP+ Y+ EL T + +IM GPA T G A++ F+ DP AL ++ LG+ VV Y+ L+P+ RF + ++L PLSA ++L+L +G+ +H AG ++VC P I L N LN F +S + YF+
Sbjct: 47 LWLDWAEVLL---PVAISALTPVWRLVKLLFGISILFYGSNFQTIAFHIIIFRISGYKSVIKHCRDLVSHYKKARKATALAARHTLSLNESLAQQKLRREEREHMLRDRQEMLRDGRITAEEARQFITRHRQEIRAIAAQQDQLAAASSSIMALRTAIPWKALSTTLRDLYAALVTSVTASTFKAAGRFTMALYCGDVLKRDVIALLGPCIDPLSYEAELCTDLESIMMGPAAARATFAGVAATAALLTMFYRDPEWALQLSLCFLGSSVVIGYLEMVLDPLARRFKV-RQLSRSPLSAILHLLLTAVGWRYHCHAGATKEFVCLPLIKVLEWGNAFLNKFNMSAVQYFN 392
BLAST of mRNA_S-dermatodea_contig12157.1343.1 vs. uniprot
Match: A0A835Z8D7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8D7_9STRA) HSP 1 Score: 198 bits (503), Expect = 4.090e-53 Identity = 124/351 (35.33%), Postives = 200/351 (56.98%), Query Frame = 1
Query: 343 NRLWLDVAEGMIGAMSLAMTSLYPVWHALQAMFGLSLLFYGQEFATLAFHIIVFRLSGWKKAAKSKDELVAYYKKARHAMTKAAKDVRTSATLIARKDKLXXXXXXXXXEKKRLHKIGRVSAGEARAFIDKYRNEIEIIAREQEALATASSSILAIKGALSFKKLAASMNSLYAALVTSITASTFKRAGQLTLALTCGGLIKRTLFDLLGPVIDPIGYQI-ELETYVANIMRGPANLYITLVGYLGAASMFFHFFVDPHQALTITFVLLGARVVTDYIVAALNPVRWRFGMSKKLDNMPLSATIYLILATLGFAFHEDAGVIGDYVCKPFIAFLGVLNKMLNHFQISTISY 1392
N L L+ E + ++L T P+W + +FGLS+LFYG F TLA HII+FR+SG+K + EL ++Y K R A AAK+ ++ +A+K K +++++ K GR++A EA+AFI K+R E+EI+A +QE L SS++A++ A+ +K + ++ LY A + SITASTF+ AG+ T+A+ CG ++ + LLGP IDP+ YQ+ E++ V +IM GP+ G A + F+ +P+ AL ++ LG+ VV Y+ + + P R G+ + L+ +L++ +G+ FH + +C PFI L N +LN F +S Y
Sbjct: 24 NELILERVEALAPKVALVTT---PLWRVTKLLFGLSILFYGLNFKTLALHIIIFRISGYKDVMQHMGELQSHYTKVRAATEAAAKNTKSLNESLAQKAKRREAREKMLVDRQQMLKDGRITAEEAQAFIAKHREELEIMAAQQEQLQATGSSLVALRSAIRWKAVGKTLRKLYEATIASITASTFEAAGRFTMAMYCGDALRDDMRTLLGPSIDPLAYQVAEVKGNVESIMMGPSAARAAFFGLAATAVLLVMFYEEPNWALKVSLCYLGSGVVVGYLKSVVCPFAERAGVRLRPRYWVLA---HLLIMGVGWRFHLANCPLLRALCLPFIHALEAGNTLLNSFSMSAAHY 368
BLAST of mRNA_S-dermatodea_contig12157.1343.1 vs. uniprot
Match: A0A6H5JP85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP85_9PHAE) HSP 1 Score: 192 bits (488), Expect = 3.950e-49 Identity = 145/405 (35.80%), Postives = 214/405 (52.84%), Query Frame = 1
Query: 262 GGILVSMAAGALKAV--GGTASAPTPPDDNRLWLDVAEGMIGAMSLAMTSL-YPVWHALQAMFGLSLLFYGQEFATLAFHIIVFRLSGWKKAAKSKDELVAYYKKARHAMTKAAKDVRTSATLIARKDKLXXXXXXXXXEKKRLHKIGRVSAGEARAFIDKYRNEIEIIAREQEALATASSSILAIKGALSFKKLAASMNSLYAALVTSITASTFKRAGQLTLALTCGGLIKRT-----LFDLLGPVIDPIGYQIELETYV----------ANIMRGPANLYITLVGYLGAASMFFHFFVDPHQALTITFVLLGARVVTDYIVAALNPVRWRFGMSKKLDNMPLSATIYLILATLGFAFHEDA----------------GVIGDYVCKPFIAFLGVLNKMLNHFQ 1374
GGI ++AA A+++V GGT P NRL +D E + M M ++ PV+H + FGLSLLFYG F T AFH+IVFR++G K+ ++ ELV Y AR ++ +AAK T + + D L EKKRL G +S E F+ KYR E+ I EQE +A SS+L+++ ++ ++ +S N +Y AL+ S TAST + AGQ TL L G L+K + + DL GP+IDPIGY+++L Y AN M GP N+ + + Y + +F F V P AL ++ V GARVVTDY+V P R + G + + P SA I+ L LG+ H + G +G + +P + F ++++L+H +
Sbjct: 182 GGIRPAIAA-AVQSVDAGGT------PRKNRLMIDYVEDALVTMWSHMVNVGVPVFHLGRFGFGLSLLFYGMAFRTFAFHVIVFRIAGMKQVQRAVRELVGNYANARRSIREAAKAAETVGERVVKGDDLQAARERMIEEKKRLLSDGFLSKRETIYFMKKYRAELLRIKEEQELFQSARSSVLSLRSSVGPRQARSSFNGVYNALIASFTASTIQTAGQFTLGLHIGNLLKASYLLTHVLDLFGPIIDPIGYRLDLSPYFDEEDIPYMGKANAMDGPRNMALNIFCY---SVVFIVFQVHPSVALKLSMVYYGARVVTDYVVLVTEPARRKLGQMT-IVHTPWSAVIHAGLTILGYCCHRNVLYTAEVPGLHPLAVGPGAVG--LVEPVVRFAVKISEILSHIE 573
BLAST of mRNA_S-dermatodea_contig12157.1343.1 vs. uniprot
Match: D8LTP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP1_ECTSI) HSP 1 Score: 181 bits (458), Expect = 9.700e-47 Identity = 118/305 (38.69%), Postives = 168/305 (55.08%), Query Frame = 1
Query: 412 PVWHALQAMFGLSLLFYGQEFATLAFHIIVFRLSGWKKAAKSKDELVAYYKKARHAMTKAAKDVRTSATLIARKDKLXXXXXXXXXEKKRLHKIGRVSAGEARAFIDKYRNEIEIIAREQEALATASSSILAIKGALSFKKLAASMNSLYAALVTSITASTFKRAGQLTLALTCGGLIKRTLFDLLGPVIDPIGYQIELETYV----------ANIMRGPANLYITLVGYLGAASMFFHFFVDPHQALTITFVLLGARVVTDYIVAALNPVRWRFGMSKKLDNMPLSATIYLILATLGFAFHEDA 1296
PV H + FGLSLLFYG F T AFH+IVFR++G K+ ++ ELV Y AR ++ +AA+ T + + D L EKKRL G +S + F+ KYR E+ I EQE +A SS+L+++ ++ ++ +S N +Y AL+ TAST + AGQ TL L G L+K + DL GP+IDPIGY+++L Y AN M GP N+ + ++ Y + +F F V P AL ++ V G RVVTDY+V P R + G + + P SA I+ L LG+ H A
Sbjct: 26 PVLHLGRLGFGLSLLFYGMAFRTFAFHVIVFRIAGMKQVQRAVRELVGKYASARRSIREAAEAAETVGERVVKGDDLQAARERMIEEKKRLLSDGFLSERDTTYFMKKYRAELLKIKEEQELFQSARSSVLSLRSSVGPRQARSSFNGVYNALIACFTASTIQTAGQFTLGLHIGNLLKTHVLDLFGPIIDPIGYRLDLSPYFDEEDIPYMGKANAMGGPRNMALNILCY---SVVFAVFRVHPSVALKLSMVYYGGRVVTDYVVLFTEPARRKLGQMT-IVHTPWSAVIHAGLTILGYYCHRSA 326
BLAST of mRNA_S-dermatodea_contig12157.1343.1 vs. uniprot
Match: D8LTP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP3_ECTSI) HSP 1 Score: 167 bits (424), Expect = 3.120e-42 Identity = 133/384 (34.64%), Postives = 202/384 (52.60%), Query Frame = 1
Query: 343 NRLWLDVAEGMIGAMSLAMTSL-YPVWHALQAMFGLSLLFYGQEFATLAFHIIVFRLSGWKKAAKSKDELVAYYKKARHAMTKAAK----DVRTSATLIARKDKLXXXXXXXXXEKKRLHKIGR-VSAGEARAFIDKYRNEIEIIAREQEALATASSSILAIKGALSFKKLAASMNSLYAALVTSITASTFKRAGQLTLALTCGGLIKRTLFDLLGPVIDPIGYQIELETYV----------ANIMRGPANLYITLVGYLGAASMFFHFFVDPHQALTITFVLLGARVVTDYIVAALNPVRWRFGMSKKLDNMPLSATIYLILATLGFAFHEDA----------------GVIGDYVCKPFIAFLGVLNKMLNHFQISTISYFS 1398
NR++LD E ++G++ + + P H + FGLSLLFYG F T AFH+IVFR+SG+K+ S +L A Y+KAR ++ +AA XXXXXXXXX RL GR ++ + R F+ KY E+ I +EQ A+ + +SS++++K ++ +S+ LY+ L+TS TAST++ AGQ+ L L G L+K L DL GP++DPIGY+++L TY N M GP NL + + Y A +F P AL V GARVVTDY+V P+R + G+ + P S I L LGF +H GV+G + +P + ++++L+ + T+++ +
Sbjct: 4 NRIFLDNVEDILGSLGRRLQMVGKPALHLTRLGFGLSLLFYGMAFRTFAFHVIVFRISGFKQVQVSSGKLAAKYRKARQSIREAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRLLAHGRKLTKEDTRKFMKKYHKELTTIKQEQAAINSINSSMISVKSSVDPDNARSSLRGLYSGLITSFTASTYQTAGQIALGLHVGTLLKTHLLDLFGPMLDPIGYRLDLTTYYDEAEIPYMGNPNAMDGPHNLAMNIFCY---ALVFAVIRAHPPLALKTAMVYFGARVVTDYLVMTAEPIRRKLGLMTAVHT-PWSGMIQAGLTVLGFYYHRHTLHTASVTGFHPLVVGPGVVG--LVEPLVRVAVWVSEVLHRIEFFTVNFVA 381
BLAST of mRNA_S-dermatodea_contig12157.1343.1 vs. uniprot
Match: A0A6H5JS93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS93_9PHAE) HSP 1 Score: 105 bits (262), Expect = 9.680e-22 Identity = 69/209 (33.01%), Postives = 107/209 (51.20%), Query Frame = 1
Query: 844 SMNSLYAALVTSITASTFKRAGQLTLALTCGGLIKRTLFDLLGPVIDPIGYQIELETYV----------ANIMRGPANLYITLVGYLGAASMFFHFFVDPHQALTITFVLLGARVVTDYIVAALNPVRWRFGMSKKLDNMPLSATIYLILATLGFAFHED----AGVIGDY----------VCKPFIAFLGVLNKMLNHFQISTISYFS 1398
S+ LY L+TS TAST++ AGQ+ L L G L+K L DL GP++DPIGY+++L TY AN M GP NL + + Y A +F P +L + + GARVVTDY+V P+R + G+ + P S I L LGF++H A V G + + +P + ++++L+ + T+++ +
Sbjct: 42 SLRGLYNGLITSFTASTYQTAGQIALGLHVGTLLKTHLLDLFGPMVDPIGYRLDLTTYYDEEEIPYMGNANAMDGPHNLAMNIFCY---ALVFVVIRAHPPLSLKMAMIYFGARVVTDYLVMVAEPIRRKLGLMTAVHT-PWSGLIQAGLTVLGFSYHRHTLHTASVTGFHPLVVGPGAVGLVEPLVRVAVWVSEVLHRIEFFTVNFVA 246
BLAST of mRNA_S-dermatodea_contig12157.1343.1 vs. uniprot
Match: A0A835Z464_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z464_9STRA) HSP 1 Score: 106 bits (264), Expect = 2.970e-20 Identity = 112/432 (25.93%), Postives = 179/432 (41.44%), Query Frame = 1
Query: 325 PTPPDDNRLWLDVAEGMIGAMSLAMTSLYPVWHALQAMFGLSLLFYGQEFATLAFHIIVFRLSGWKKAAKSKDELVAYYKKARHAMTKAAKDVRTSATLIARKDK--LXXXXXXXXXEKKRLHKIGRVSAGEARAFIDKYRNEIEI-------------------------------IAREQEALATASSSILAIKGALSFKKLAAS---------------------------------------------------------------------MNSLYAALVTSITASTFKRAGQLTLALTCGGLIKRTLFDLLGPVIDPIGYQI------ELETYVANIMRGPANLYITLVGYLGAASMFFHFFVDPHQALTITFVLLGARVVTDYIVAALNPVRWRFGMSKKLDNMPLSATIYLILATLGFAFHEDA 1296
P + +L+L+ EG + A+ + PV+ +L+A+FGLS+LF+G F +LA HII+F++ G+KK LVA+Y++ R A AA+ R TL R+D ++K + GR+ EARAF+ K+ +A + A SSI A+ A+ + ++ S + S YAA+ TS+ ++ FK A ++ LA+ CG +++ + LL P IDP ++ ELE + IM GPA LVG + + FF +P AL + VLLG+R+V ++I + + R G + L L A +++ L TLG+ +HEDA
Sbjct: 57 PEHHEITKLFLEHVEGAVNAVVPVVA---PVFFSLKALFGLSILFFGMTFKSLALHIILFQIVGFKKVVMHWHHLVAHYRRVRAATLHAARSARR--TLKEREDTGARVREQEAMLRDRKAMLADGRLDVDEARAFMAKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAEKDAAQGATKSSIAALYYAIPWHEIWVSFCDLYAVLATSVASTAFKSAARVQLAIYCGXXXXXXXXXXXXXXVGWHRAIDLQLCICPYFNCEVGRNGLPSTYAAVATSVASTAFKSAARVQLAIYCGKVVREDVLALLAPYIDPRVSEVLEDEDDELEEQLQVIMNGPAAAKAALVGAAASVGLTALFFKEPEWALMLALVLLGSRIVAEFISRMVVWLVVRNGKAHWLRKSQL-ALLHMFLGTLGWFYHEDA 482 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12157.1343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12157.1343.1 >prot_S-dermatodea_contig12157.1343.1 ID=prot_S-dermatodea_contig12157.1343.1|Name=mRNA_S-dermatodea_contig12157.1343.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=442bp MNLFGRETDSEAKMEARAKRKRKGRQEMEDAAARETLRKSREERLERELEback to top mRNA from alignment at S-dermatodea_contig12157:331..6284- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig12157.1343.1 ID=mRNA_S-dermatodea_contig12157.1343.1|Name=mRNA_S-dermatodea_contig12157.1343.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5954bp|location=Sequence derived from alignment at S-dermatodea_contig12157:331..6284- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig12157:331..6284- >mRNA_S-dermatodea_contig12157.1343.1 ID=mRNA_S-dermatodea_contig12157.1343.1|Name=mRNA_S-dermatodea_contig12157.1343.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2652bp|location=Sequence derived from alignment at S-dermatodea_contig12157:331..6284- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |