mRNA_S-dermatodea_contig12149.1336.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12149.1336.1
Unique NamemRNA_S-dermatodea_contig12149.1336.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12149.1336.1 vs. uniprot
Match: A0A6H5JZ72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ72_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 8.390e-49
Identity = 108/208 (51.92%), Postives = 127/208 (61.06%), Query Frame = 1 
Query:   22 LEEAVRRLMKDYDTARREVLYGLDEHGRPLEENG--GEE--SGDERPLLPREPVSFRTLRTLPKRDLSPPIHLDTGSKHIG----GAEDRVGGVPLEAGEGGGDDEA----------DETPNYVLVMQERHKLGSSATMARGAFLFSLVGLSADLTKKQVCMRGCWRLSDSLEAGRFVLSGLWKALRPPPGLFGSIRRAQQSIASFCC 591
            LEEAV R+MKDY  AR+EVLYGLD+ GRPLEE    G E   G   P +PREPVS   L++L KR+  P     TGS +I     G     GGVP  + E    DE              PN+VLVM+ER KLGSSATMARGAFLFSL GL + LTKK+V   G WR S S EA RF++SGLW A+RPPPGL G++      +A  CC
Sbjct:  162 LEEAVSRMMKDYQRARKEVLYGLDDLGRPLEEVASLGREVDRGGRSPSIPREPVSLEDLQSLSKREKLP----RTGSINISVLKNGLSTTAGGVPASSKEAQVSDEIAGRRKERDPLGGVPNHVLVMKERQKLGSSATMARGAFLFSLSGLCSALTKKRVSRAGGWRPSQSAEAARFIISGLWTAIRPPPGLLGALSSTAGLLAPRCC 365
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BLAST of mRNA_S-dermatodea_contig12149.1336.1 vs. uniprot
Match: D8LD61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD61_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 6.860e-46
Identity = 110/211 (52.13%), Postives = 135/211 (63.98%), Query Frame = 1 
Query:   22 LEEAVRRLMKDYDTARREVLYGLDEHGRPLEE--NGGEE--SGDERPLLPREPVSFRTLRTLPKRDLSPPIHLD-TGSKHIGGAEDRV----GGVPLEAGE-------GGGDDEADE---TPNYVLVMQERHKLGSSATMARGAFLFSLVGLSADLTKKQVCMRGCWRLSDSLEAGRFVLSGLWKALRPPPGLFGSIRRAQQSIASFCCGR 597
            LEEAV R+MKDY  AR+EVLYGLD+ GRPLEE  + G E  SG   P LPR+PVS   L++L KR     I+L  TGS ++ G ++ +    GG+P  + E       GG   E D     PN+VLVM+ER KLGS+ATMARGAFLFSL GL + LTKK+V   G WR S S EA RFV SGLW A+RPPPGL G++      +A+ C  R
Sbjct:  467 LEEAVSRMMKDYQRARKEVLYGLDDLGRPLEEVASSGREVDSGGRSPSLPRDPVSLEDLQSLSKR-----INLPRTGSINLSGLKNGLSTTAGGLPARSKEAEVSEGIGGRRREGDPLGGVPNHVLVMKERQKLGSAATMARGAFLFSLSGLCSALTKKRVNRTGGWRPSQSAEAARFVFSGLWTAIRPPPGLLGALSSTPGFLAARCFRR 672
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12149.1336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZ72_9PHAE8.390e-4951.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD61_ECTSI6.860e-4652.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12149contigS-dermatodea_contig12149:1401..3421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size617
Cds size615
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12149.1336.1prot_S-dermatodea_contig12149.1336.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12149 1401..3421 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924233.3727362-CDS-S-dermatodea_contig12149:1400..15571622924233.3727362-CDS-S-dermatodea_contig12149:1400..1557Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12149 1401..1557 -
1694079112.5648098-CDS-S-dermatodea_contig12149:1400..15571694079112.5648098-CDS-S-dermatodea_contig12149:1400..1557Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12149 1401..1557 -
1622924233.3806818-CDS-S-dermatodea_contig12149:2011..23231622924233.3806818-CDS-S-dermatodea_contig12149:2011..2323Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12149 2012..2323 -
1694079112.5764487-CDS-S-dermatodea_contig12149:2011..23231694079112.5764487-CDS-S-dermatodea_contig12149:2011..2323Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12149 2012..2323 -
1622924233.3878818-CDS-S-dermatodea_contig12149:3275..34211622924233.3878818-CDS-S-dermatodea_contig12149:3275..3421Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12149 3276..3421 -
1694079112.5856752-CDS-S-dermatodea_contig12149:3275..34211694079112.5856752-CDS-S-dermatodea_contig12149:3275..3421Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12149 3276..3421 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12149.1336.1

>prot_S-dermatodea_contig12149.1336.1 ID=prot_S-dermatodea_contig12149.1336.1|Name=mRNA_S-dermatodea_contig12149.1336.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=205bp
LPEVAELLEEAVRRLMKDYDTARREVLYGLDEHGRPLEENGGEESGDERP
LLPREPVSFRTLRTLPKRDLSPPIHLDTGSKHIGGAEDRVGGVPLEAGEG
GGDDEADETPNYVLVMQERHKLGSSATMARGAFLFSLVGLSADLTKKQVC
MRGCWRLSDSLEAGRFVLSGLWKALRPPPGLFGSIRRAQQSIASFCCGRT
KPKPV
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mRNA from alignment at S-dermatodea_contig12149:1401..3421-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12149.1336.1 ID=mRNA_S-dermatodea_contig12149.1336.1|Name=mRNA_S-dermatodea_contig12149.1336.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2021bp|location=Sequence derived from alignment at S-dermatodea_contig12149:1401..3421- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCCCCGAGGTCGCGGAGCTGCTGGAAGAGGCGGTGCGTCGGCTCATGAA
AGACTACGACACGGCAAGAAGGGAGGTGCTCTACGGGCTGGACGAGCATG
GGCGGCCCCTCGAGGAGAACGGGGGCGAAGAATCGGGAGACGAGAGGCGA
GTGGCGGATTGTCGGTGCCGAAAACGATTCGGGAGCTATCCAAGGGTAAA
CGGGGGCGTGGTTTTAGCCTTTAGGTAAACCCAGTTGTGCGGCCTTTATT
CTATCTGCAGACAGAGTGTGGTGGTTGTGCATTGCGGATCATGTGGTTTT
ACAAGCTGGCACTTGTCCGATTCAGCCACCAGGAAATGGGATCTGTTGCA
AAACCTTGTCGCTCGTCGGTCGCTCGAAGGAAAAAAACGCGAGCGGTAAA
GATACAGAGAGGGGCCGACTCCCTTCGCAAGCCCCCCCCCCTCCCCCCCC
TCCGCAAATCGTTGGATTGCTCTATCGACCTAGTGGTAACATGCCAAACC
GTGCAAGCACAGCACACTTGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGGCTCACGTGTGACTGGCCGGCCTTGTTCGCATCCCGTCTGTGGTCGC
GAAAGATTTTCCCATACCTTCCCGGTACACGGGGAAGGTTTTTATCTTGC
ATTGCATTCAGAAATCCCGCAGCTCTGGATGTTTTCCTCTATTTTTGCTT
GCTCACGCTCTCGCGCATTACGCGGCAGAGCAGAGAAATTACGAATTCAT
GCCTTTTTTCACTCCGGCGGGCGACCTCCATTCTACTCCGCCGTGGTGTC
ACGAGTTGAACCGATGGGCGAATGGTCTACTTGGATGCAATACGGGTGTT
GGTGGGACGCAGGAACGTGACATGTTCCTACCCGCGGACTTGGGAGCTCG
GTCCTACCATACTTCGGACATGCATGCACGCAGACGAAAGCCGCTGTAAA
AGGCAAGACGGGGGGGGCTCAAGGCGAGGCTCTAGGAAGCCCCCCTAAGC
AGGTTATCTCCACTTCTGTCCTCACGCGTAGCGCGTACACCAGGTTGACA
GATATTTCGGGTTTTGCCCAAATTCGCATTCGCTTTGCCCTACGGCAGGC
CCTTGCTTCCGCGGGAACCGGTTTCCTTCAGGACCCTTCGGACCCTCCCC
AAGCGCGACCTCTCCCCGCCCATACACCTAGACACGGGGTCAAAACACAT
CGGAGGGGCGGAAGACCGCGTGGGAGGCGTTCCTCTGGAGGCGGGAGAGG
GCGGTGGGGACGACGAAGCGGATGAGACCCCCAATTACGTATTGGTGATG
CAGGAGCGCCATAAACTTGGGAGTTCCGCTACTATGGCGAGGGGGGCGTT
CTTATTCAGCCTGGTAGGGCTTTCCGCGGATCTGACGAAGAAGCAGGTCT
GCATGCGAGGGTGAGGGCGTGAGAAGACGAGATAAATTGGCGCGCTCGGG
AGATCCGAGGCGGCTGGGCTTCGGGTAGGCAAGGGATCATGTGTGCTTCG
ACGTCCGTAGTGCAACACGCATCGACTTTTTCGTTGCCGTACAGAATGGC
TTTTGTGTTGGAAACGTTATATCTCGGGGATCATGGTGTTGGGTTGTTTC
GTCGGTGCTTGAAGTCGTGTCGGTAGCCTCACGTTGCCGGGCCAGGTCAC
CCATGTCCTGACCCCAAAACACGCTCTGCATTTTCGTGCCTCAGGCACCA
TTTCCTCGCCCGACCACGTTTAGACGGATGCATGCGTGGAGATCGTACGG
TCCCTTCTTACCGACGAGTTCACTCCTACTCCCACGCTACAACATAACAC
CTTCACGCTCGTCCCGCACACAAACCACTCAAAACGAAACGCTCAAAACC
ACCAAAACTCGCAGATGCTGGCGCTTGTCGGACTCCTTGGAGGCGGGGCG
CTTCGTCCTGTCCGGACTCTGGAAAGCCCTGCGGCCGCCGCCTGGACTGT
TCGGCAGCATCCGCCGTGCCCAGCAGAGCATCGCGAGCTTCTGCTGCGGC
CGCACGAAACCAAAGCCTGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12149:1401..3421-

>mRNA_S-dermatodea_contig12149.1336.1 ID=mRNA_S-dermatodea_contig12149.1336.1|Name=mRNA_S-dermatodea_contig12149.1336.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1230bp|location=Sequence derived from alignment at S-dermatodea_contig12149:1401..3421- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCCCCGAGGTCGCGGAGCTGCTGGAAGAGGCGGTGCGTCGGCTCATGAA
AGACTACGACACGGCAAGAAGGGAGGTGCTCTACGGGCTGGACGAGCATG
GGCGGCCCCTCGAGGAGAACGGGGGCGAAGAATCGGGAGACGAGAGCTCC
CCGAGGTCGCGGAGCTGCTGGAAGAGGCGGTGCGTCGGCTCATGAAAGAC
TACGACACGGCAAGAAGGGAGGTGCTCTACGGGCTGGACGAGCATGGGCG
GCCCCTCGAGGAGAACGGGGGCGAAGAATCGGGAGACGAGAGGCCCTTGC
TTCCGCGGGAACCGGTTTCCTTCAGGACCCTTCGGACCCTCCCCAAGCGC
GACCTCTCCCCGCCCATACACCTAGACACGGGGTCAAAACACATCGGAGG
GGCGGAAGACCGCGTGGGAGGCGTTCCTCTGGAGGCGGGAGAGGGCGGTG
GGGACGACGAAGCGGATGAGACCCCCAATTACGTATTGGTGATGCAGGAG
CGCCATAAACTTGGGAGTTCCGCTACTATGGCGAGGGGGGCGTTCTTATT
CAGCCTGGTAGGGCTTTCCGCGGATCTGACGAAGAAGCAGGTCTGCATGC
GAGGGCCCTTGCTTCCGCGGGAACCGGTTTCCTTCAGGACCCTTCGGACC
CTCCCCAAGCGCGACCTCTCCCCGCCCATACACCTAGACACGGGGTCAAA
ACACATCGGAGGGGCGGAAGACCGCGTGGGAGGCGTTCCTCTGGAGGCGG
GAGAGGGCGGTGGGGACGACGAAGCGGATGAGACCCCCAATTACGTATTG
GTGATGCAGGAGCGCCATAAACTTGGGAGTTCCGCTACTATGGCGAGGGG
GGCGTTCTTATTCAGCCTGGTAGGGCTTTCCGCGGATCTGACGAAGAAGC
AGGTCTGCATGCGAGGATGCTGGCGCTTGTCGGACTCCTTGGAGGCGGGG
CGCTTCGTCCTGTCCGGACTCTGGAAAGCCCTGCGGCCGCCGCCTGGACT
GTTCGGCAGCATCCGCCGTGCCCAGCAGAGCATCGCGAGCTTCTGCTGCG
GCCGCACGAAACCAAAGCCTGTGATGCTGGCGCTTGTCGGACTCCTTGGA
GGCGGGGCGCTTCGTCCTGTCCGGACTCTGGAAAGCCCTGCGGCCGCCGC
CTGGACTGTTCGGCAGCATCCGCCGTGCCCAGCAGAGCATCGCGAGCTTC
TGCTGCGGCCGCACGAAACCAAAGCCTGTG
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