mRNA_S-dermatodea_contig12137.1332.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig12137.1332.1 vs. uniprot
Match: D7G4S8_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4S8_ECTSI) HSP 1 Score: 262 bits (670), Expect = 1.950e-78 Identity = 131/151 (86.75%), Postives = 144/151 (95.36%), Query Frame = 1
Query: 1 VQISAIRGLLSEDRDVIIHAHTGSGKTLAYLLPLIATMDPDNSNVQAIVVAPGRELASQIFSVCEKLIQGLGLRSAMVIGGANALRQVEKVRKVKPQIVIATPGRLCELVFDRRRLKLGSVRTVVLDEVDALLKPPYDQEINAIVEGTPRG 453
VQ+SAIRGLLSEDRDVIIHAHTGSGKTLAYLLPLIA DPD++ +QA+VVAPGRELASQIFSVCEKLIQG GLRS+MVIGGANALRQVE+ +KVKPQIVIATPGRLCELVFDRRR+KLG VRTVVLDEVDALL+PPYDQEI+AI++ TPRG
Sbjct: 861 VQVSAIRGLLSEDRDVIIHAHTGSGKTLAYLLPLIAATDPDSNALQAVVVAPGRELASQIFSVCEKLIQGTGLRSSMVIGGANALRQVERFKKVKPQIVIATPGRLCELVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATPRG 1011
BLAST of mRNA_S-dermatodea_contig12137.1332.1 vs. uniprot
Match: A0A835Z5P1_9STRA (Phosphodiesterase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P1_9STRA) HSP 1 Score: 156 bits (395), Expect = 2.270e-41 Identity = 86/206 (41.75%), Postives = 121/206 (58.74%), Query Frame = 1
Query: 1 VQISAIRGLLSEDRDVIIHAHTGSGKTLAYLLPLIATMDPDNSNVQAIVVAPGRELASQIFSVCEKLIQGLGLRSAMVIGGANALRQV--------------------------------------------------------EKVRKVKPQIVIATPGRLCELVFDRRRLKLGSVRTVVLDEVDALLKPPYDQEINAIVEGTPR 450
+Q SA+ LL DV+IHAHTGSGKTLA+LLPL+ +D D+ +VQA+VVAPGREL SQIF+V ++L++G G+R+ M+IGGAN RQV ++++ KP ++I TPGR+CEL +++R+KL +V+ VVLDEVD L++PPYD+EI+ I+ GT R
Sbjct: 509 LQASALSELLGGTNDVVIHAHTGSGKTLAFLLPLLQRIDTDDDSVQAVVVAPGRELGSQIFAVAQQLVEGTGIRTQMLIGGANVNRQVYAHVGISQAVALHGARHRPAARNFNSDYHLQATGTTSTVWIVNSQSPIIDDPPRHIDRLKANKPHVLIGTPGRVCELALEKKRVKLANVKFVVLDEVDTLMRPPYDEEIDQII-GTMR 713
BLAST of mRNA_S-dermatodea_contig12137.1332.1 vs. uniprot
Match: A0A7S3HFU4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HFU4_9STRA) HSP 1 Score: 141 bits (355), Expect = 7.320e-40 Identity = 72/149 (48.32%), Postives = 100/149 (67.11%), Query Frame = 1
Query: 1 VQISAIRGLLSEDRDVIIHAHTGSGKTLAYLLPLIATMDPDNSNVQAIVVAPGRELASQIFSVCEKLIQGLGLRSAMVIGGANALRQVEKVRKVKPQIVIATPGRLCELVFDRRRLKLGSVRTVVLDEVDALLKPPYDQEINAIVEGTP 447
+Q +AI L ++V++ A TGSGKTLAYLLPL+ +DP VQAI++AP REL QI V L QG R +IGGAN Q ++R +PQI+IATPGRL E+VF +L+LG V+ VV+DEVD++++ PY E+ +++ TP
Sbjct: 3 IQAAAIPAL-HRGQNVVLQAQTGSGKTLAYLLPLLKVVDPSVKQVQAIILAPSRELVQQIGQVAASLFQGTDYRVQTLIGGANIHHQTIRLRDDRPQILIATPGRLAEIVFKLEKLRLGRVKVVVVDEVDSMMQEPYIGEVETLLQATP 150
BLAST of mRNA_S-dermatodea_contig12137.1332.1 vs. uniprot
Match: A0A7S0BFW5_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BFW5_9RHOD) HSP 1 Score: 142 bits (357), Expect = 1.510e-38 Identity = 72/143 (50.35%), Postives = 103/143 (72.03%), Query Frame = 1
Query: 10 SAIRGLLSEDRDVIIHAHTGSGKTLAYLLPLIATMDPDNSNVQAIVVAPGRELASQIFSVCEKLIQGLGLRSAMVIGGANALRQVEKVRKVKPQIVIATPGRLCELVFDRRRLKLGSVRTVVLDEVDALLKPPYDQEINAIVE 438
SA+ E RD++I +HTG+GKT+A+LLP+I ++ D+ +QA +VAP RELA QI + C+KLI+ + +RS +IGGAN RQVEK++K+KP IV+ TPGRL EL + R+LKLGSVR V+DEVD L + I ++++
Sbjct: 154 SAVVPWALEGRDIVICSHTGTGKTMAFLLPIIEQIEEDSDEIQATIVAPTRELAMQISAECDKLIRRMDVRSIPLIGGANPARQVEKMKKLKPHIVVGTPGRLAELC-ESRKLKLGSVRMTVVDEVDQCLAQGFIDTIGSLIK 295
BLAST of mRNA_S-dermatodea_contig12137.1332.1 vs. uniprot
Match: A0A7S2XV29_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV29_9STRA) HSP 1 Score: 145 bits (366), Expect = 3.550e-38 Identity = 69/146 (47.26%), Postives = 101/146 (69.18%), Query Frame = 1
Query: 1 VQISAIRGLLSEDRDVIIHAHTGSGKTLAYLLPLIATMDPDNSNVQAIVVAPGRELASQIFSVCEKLIQGLGLRSAMVIGGANALRQVEKVRKVKPQIVIATPGRLCELVFDRRRLKLGSVRTVVLDEVDALLKPPYDQEINAIVE 438
VQ +A++ LL E RD ++HA TGSGKTLAYLLP + +DPD VQ +VV P REL +Q+ +V +L+ G G+ +IGGAN RQ+E ++K +PQ+V+ TPGRL +LV + RL++G VLDEVD LL+ + E++ +++
Sbjct: 175 VQAAALQSLLVEGRDGVLHAPTGSGKTLAYLLPAVCKVDPDRDVVQVVVVVPSRELGAQVANVLNQLLPGTGITPLSLIGGANINRQIENLKKKRPQVVVGTPGRLADLVIEYGRLRVGHATVAVLDEVDMLLESQFRGEVDHLMQ 320
BLAST of mRNA_S-dermatodea_contig12137.1332.1 vs. uniprot
Match: A0A7S4BCL2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BCL2_CHRCT) HSP 1 Score: 144 bits (364), Expect = 1.070e-37 Identity = 73/146 (50.00%), Postives = 103/146 (70.55%), Query Frame = 1
Query: 1 VQISAIRGLLSEDRDVIIHAHTGSGKTLAYLLPLIATMDPDNSNVQAIVVAPGRELASQIFSVCEKLIQGLGLRSAMVIGGANALRQVEKVRKVKPQIVIATPGRLCELVFDRRRLKLGSVRTVVLDEVDALLKPPYDQEINAIVE 438
+Q++A + S RDV+IHAHTGSGKTLA+LLPLI +DP + QA+V++P RELA Q + V E L++ LR + GGAN RQ+E+VRK +PQ++I T GR+CEL F+ ++LKL VR +VLDEVD L+ P+ + ++E
Sbjct: 155 LQLAAFEPIAS-GRDVLIHAHTGSGKTLAFLLPLIEQLDPSSKEPQALVLSPSRELAYQTYRVAEMLLKDSPLRVVSLAGGANPSRQIERVRKERPQLLIGTAGRVCELNFEAKKLKLQRVRHLVLDEVDEALRTPHLEPTTRLIE 299
BLAST of mRNA_S-dermatodea_contig12137.1332.1 vs. uniprot
Match: A0A4D9D1Y7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1Y7_9STRA) HSP 1 Score: 141 bits (356), Expect = 6.960e-37 Identity = 68/146 (46.58%), Postives = 104/146 (71.23%), Query Frame = 1
Query: 1 VQISAIRGLLSEDRDVIIHAHTGSGKTLAYLLPLIATMDPDNSNVQAIVVAPGRELASQIFSVCEKLIQGLGLRSAMVIGGANALRQVEKVRKVKPQIVIATPGRLCELVFDRRRLKLGSVRTVVLDEVDALLKPPYDQEINAIVE 438
+Q +AI LL + DVI+H++TGSGKTLAYLLPL++ +DP S+ Q +V+AP RELA+QI SV E+L + + +IGGA+ RQ+EK+R +PQ+++ TPGR+ E+V ++R+ ++G +VLDEVD LL Y ++ +V+
Sbjct: 89 IQAAAIPALLKGE-DVILHSYTGSGKTLAYLLPLLSRLDPAQSHTQLLVIAPSRELAAQIASVAEELTEDTDINVVSLIGGASQQRQIEKLRWERPQVLVGTPGRVAEMVLEKRKARIGRAEMLVLDEVDMLLDDSYHGDLRMLVQ 233
BLAST of mRNA_S-dermatodea_contig12137.1332.1 vs. uniprot
Match: A0A7S3E5W2_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E5W2_9RHOD) HSP 1 Score: 140 bits (354), Expect = 1.430e-36 Identity = 71/143 (49.65%), Postives = 102/143 (71.33%), Query Frame = 1
Query: 10 SAIRGLLSEDRDVIIHAHTGSGKTLAYLLPLIATMDPDNSNVQAIVVAPGRELASQIFSVCEKLIQGLGLRSAMVIGGANALRQVEKVRKVKPQIVIATPGRLCELVFDRRRLKLGSVRTVVLDEVDALLKPPYDQEINAIVE 438
SA+ E RD++I +HTG+GKT+A+LLP+I ++ D+ VQA++VAP RELA QI C+KLIQ + +RS +IGGAN RQ+EK++K KP IV+ TPGRL EL ++ R+LKL SVR V+DEVD L + + ++++
Sbjct: 152 SAVVPWALEGRDIVICSHTGTGKTMAFLLPIIEQIEEDSDEVQAMIVAPTRELAMQISGECDKLIQRMDVRSMPLIGGANPARQIEKMKKNKPHIVVGTPGRLAEL-YESRKLKLSSVRMTVVDEVDQCLSQGFIDTLGSLMK 293
BLAST of mRNA_S-dermatodea_contig12137.1332.1 vs. uniprot
Match: A0A7S2ZBP0_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZBP0_9RHOD) HSP 1 Score: 140 bits (354), Expect = 4.580e-36 Identity = 71/143 (49.65%), Postives = 102/143 (71.33%), Query Frame = 1
Query: 10 SAIRGLLSEDRDVIIHAHTGSGKTLAYLLPLIATMDPDNSNVQAIVVAPGRELASQIFSVCEKLIQGLGLRSAMVIGGANALRQVEKVRKVKPQIVIATPGRLCELVFDRRRLKLGSVRTVVLDEVDALLKPPYDQEINAIVE 438
SA+ E RD++I +HTG+GKT+A+LLP+I ++ D+ VQA++VAP RELA QI C+KLIQ + +RS +IGGAN RQ+EK++K KP IV+ TPGRL EL ++ R+LKL SVR V+DEVD L + + ++++
Sbjct: 152 SAVVPWALEGRDIVICSHTGTGKTMAFLLPIIEQIEEDSDEVQAMIVAPTRELAMQISGECDKLIQRMDVRSMPLIGGANPARQIEKMKKNKPHIVVGTPGRLAEL-YESRKLKLSSVRMTVVDEVDQCLSQGFIDTLGSLMK 293
BLAST of mRNA_S-dermatodea_contig12137.1332.1 vs. uniprot
Match: U5L5H8_9BACI (RNA helicase n=7 Tax=Bacillus TaxID=1386 RepID=U5L5H8_9BACI) HSP 1 Score: 133 bits (334), Expect = 1.410e-34 Identity = 69/139 (49.64%), Postives = 97/139 (69.78%), Query Frame = 1
Query: 28 LSEDRDVIIHAHTGSGKTLAYLLPLIATMDPDNSNVQAIVVAPGRELASQIFSVCEKLIQGLGLRSAMVIGGANALRQVEKVRKVKPQIVIATPGRLCELVFDRRRLKLGSVRTVVLDEVDALLKPPYDQEINAIVEGT 444
+ E RDVI + TG+GKTLAYLLPL+ +DP VQA++VAP +EL QIFS +K +G G++ A IGGAN RQ+EK++K PQI + TPGR+ EL+ +++LK+ V+TVVLDE D LL P + + + I++ T
Sbjct: 38 IQEGRDVIAESPTGTGKTLAYLLPLLDKIDPGKKAVQAVIVAPSQELVMQIFSEVQKWAEGSGIKGATFIGGANTKRQLEKLKK-HPQIALGTPGRMLELI-KQKKLKMHEVKTVVLDEGDQLLVPEHLETVKTILKST 174 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12137.1332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12137.1332.1 >prot_S-dermatodea_contig12137.1332.1 ID=prot_S-dermatodea_contig12137.1332.1|Name=mRNA_S-dermatodea_contig12137.1332.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=151bp VQISAIRGLLSEDRDVIIHAHTGSGKTLAYLLPLIATMDPDNSNVQAIVVback to top mRNA from alignment at S-dermatodea_contig12137:1414..3749+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig12137.1332.1 ID=mRNA_S-dermatodea_contig12137.1332.1|Name=mRNA_S-dermatodea_contig12137.1332.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2336bp|location=Sequence derived from alignment at S-dermatodea_contig12137:1414..3749+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig12137:1414..3749+ >mRNA_S-dermatodea_contig12137.1332.1 ID=mRNA_S-dermatodea_contig12137.1332.1|Name=mRNA_S-dermatodea_contig12137.1332.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at S-dermatodea_contig12137:1414..3749+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |