prot_S-dermatodea_contig12125.1324.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig12125.1324.1
Unique Nameprot_S-dermatodea_contig12125.1324.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length251
Homology
BLAST of mRNA_S-dermatodea_contig12125.1324.1 vs. uniprot
Match: A0A6H5KDC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC0_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 3.260e-42
Identity = 94/158 (59.49%), Postives = 110/158 (69.62%), Query Frame = 0
Query:   97 SDSEPESVIAGEXXXXXXXXXXXXXXQEGKKVNENSVMLCQSCGKKVCRRGKRAKAD---KEARTENEQEXXXXXRTVFVGNLPITYNPKKVKALFKEHGAVESVRLRSVAVAGVAVDKAGDQQLVRKVCVNRGMVDKEVKNSVNAYVVFKDLASVEK 251
            SDSEPESVIAG+      XX       EG++ + N V +    GK     G   KA    +E   +++ +     RTVFVGNLP ++ PKKVKA FKE+GAVESVRLRSVAV G AVDKAGDQQLVRKVCVNRGMVD+EVK+SVNAYVV+KD ASVEK
Sbjct:  243 SDSEPESVIAGQGGDSSDXXMDDI--DEGEEKDNNGVAMAAGRGKAEVEAGNTEKASGAKEEGSNDDKDDEERESRTVFVGNLPTSFTPKKVKAAFKEYGAVESVRLRSVAVKGTAVDKAGDQQLVRKVCVNRGMVDEEVKSSVNAYVVYKDGASVEK 398          
BLAST of mRNA_S-dermatodea_contig12125.1324.1 vs. uniprot
Match: D8LFV0_ECTSI (White-brown-complex ABC transporter family (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFV0_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 1.960e-37
Identity = 101/160 (63.12%), Postives = 110/160 (68.75%), Query Frame = 0
Query:   97 SDSEPESVIAGEXXXXXXXXXXXXXXQE--GKKVNENSVMLCQSCGKKVCRRGKRAKAD---KEARTENEQEXXXXXRTVFVGNLPITYNPKKVKALFKEHGAVESVRLRSVAVAGVAVDKAGDQQLVRKVCVNRGMVDKEVKNSVNAYVVFKDLASVEK 251
            SDSEPESVIAG+      XXXXXXXX    G     N V      GK     G  AKA    +         XX   RTVFVGNLP ++ PKKVKA FKE+GAVESVRLRSVAV G+AVDKAGDQQLVRKVCVNRGMVD+EVK+SVNAYVV+KD ASVEK
Sbjct:  253 SDSEPESVIAGQGGDSSDXXXXXXXXXXXXGXXXXNNGVTKAAGRGKAEAEAGDTAKASAPKEXXXXXXXXXXXKESRTVFVGNLPTSFTPKKVKAAFKEYGAVESVRLRSVAVQGMAVDKAGDQQLVRKVCVNRGMVDEEVKSSVNAYVVYKDCASVEK 412          
BLAST of mRNA_S-dermatodea_contig12125.1324.1 vs. uniprot
Match: A0A448ZNA7_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNA7_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 2.970e-18
Identity = 49/98 (50.00%), Postives = 67/98 (68.37%), Query Frame = 0
Query:  156 ARTENEQEXXXXXRTVFVGNLPITYNPKKVKALFKEHGAVESVRLRSVAVAGVAV--DKAGDQQLVRKVCVNRGMVDKEVKNSVNAYVVFKDLASVEK 251
            A ++N+       RT+FVGNLP+T   K + ALF+E G V S R+RSV V G+ +  D+AG+Q ++RKVCVN   +DK + +SV  YVVFK+LA VEK
Sbjct:  109 AESKNKPGKEEEERTIFVGNLPLTTTRKGLAALFRECGPVASSRIRSVPVTGIKLPKDQAGNQNMMRKVCVNTNQIDKSLTDSVQGYVVFKELADVEK 206          
BLAST of mRNA_S-dermatodea_contig12125.1324.1 vs. uniprot
Match: A0A7S3YGS8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YGS8_HETAK)

HSP 1 Score: 84.0 bits (206), Expect = 2.900e-16
Identity = 43/89 (48.31%), Postives = 64/89 (71.91%), Query Frame = 0
Query:  161 EQEXXXXXRTVFVGNLPITYNPKKVKALFKEHGAVESVRLRSVAVAGVAVDKAGDQQLVRKVCVNRGMVDKEVKNSVNAYVVFKDLASV 249
            E+      RT+FVGN+PI+    +++ +FK++G +ES+R+RSV   GVAVD+ G+Q+LV+KV + +    +E K+S NAYVVFKD ASV
Sbjct:   76 EENNGKDERTIFVGNIPISVKMAQLQKMFKKYGQIESMRMRSVNTQGVAVDEHGNQRLVKKVAIYQKKFGEE-KDSFNAYVVFKDAASV 163          
BLAST of mRNA_S-dermatodea_contig12125.1324.1 vs. uniprot
Match: A0A7S4EFG3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EFG3_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.440e-15
Identity = 44/96 (45.83%), Postives = 64/96 (66.67%), Query Frame = 0
Query:  158 TENEQEXXXXXRTVFVGNLPITYNPKKVKALFKEHGAVESVRLRSVAVAGVAV--DKAGDQQLVRKVCVNRGMVDKEVKNSVNAYVVFKDLASVEK 251
            ++++ E     RT+FVGNLP+    K++ ALF+E G V S R+RSV V  + +  D+AG+Q ++RKVCVN   +DK + + V  YVVFK+L  VEK
Sbjct:   94 SKDKSEPKDEERTIFVGNLPLATTRKELAALFRECGPVASSRIRSVPVTSIKLPQDQAGNQNMMRKVCVNTNQIDKTLTDKVQGYVVFKNLDDVEK 189          
BLAST of mRNA_S-dermatodea_contig12125.1324.1 vs. uniprot
Match: A0A1E7FWD7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FWD7_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 5.120e-15
Identity = 43/87 (49.43%), Postives = 62/87 (71.26%), Query Frame = 0
Query:  169 RTVFVGNLPITYNPKKVKALFKEHGA--VESVRLRSVAVAGVAV--DKAGDQQLVRKVCVNRGMVDKEVKNSVNAYVVFKDLASVEK 251
            RTVFVGNLP++   KK+ ALFK+ G   V S R+RSV V G+ +  D+AG+Q++++KVCVN   +D  + ++V  YVVFK+L +V K
Sbjct:    5 RTVFVGNLPLSITRKKLAALFKDKGCGPVASCRIRSVPVTGIKLPQDRAGNQRMMKKVCVNTKQIDDTLTDTVQGYVVFKNLDTVAK 91          
BLAST of mRNA_S-dermatodea_contig12125.1324.1 vs. uniprot
Match: A0A1V9ZDC4_9STRA (RNA-binding protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZDC4_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.180e-14
Identity = 51/134 (38.06%), Postives = 77/134 (57.46%), Query Frame = 0
Query:  123 QEGKKVNENSVMLCQSCGKKVCRRGKRAKADKEA-----RTENEQEXXXXXRTVFVGNLPITYNPKKVKALFKEHGAVESVRLRSVAVAGVAVDKAGDQQLVRKVCVNRGMVDKEVKNSVNAYVVFKDLASVEK 251
            +E  +V    V+L    G K  ++ K +K   EA     R +++++     RT+FVGN+ +    +++K  F   G VES RLRS+ VAG AVD+ G Q LV+KVC N+ +   E +++ NAYVVF    S+EK
Sbjct:   75 EEXXEVKAPKVVLFDGEGPKKVKKPKHSKVKPEAAAPEPRKDDDEDDEKAPRTIFVGNVSLEATAEELKKFFSSCGKVESARLRSLPVAGCAVDQHGKQNLVKKVCANKKLFV-EGRDNCNAYVVFASEESIEK 207          
BLAST of mRNA_S-dermatodea_contig12125.1324.1 vs. uniprot
Match: W7U9S2_9STRA (Rna binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U9S2_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.800e-14
Identity = 40/89 (44.94%), Postives = 63/89 (70.79%), Query Frame = 0
Query:  155 EARTENEQEXXXXXRTVFVGNLPITYNPKKVKALFKEHGAVESVRLRSVAVAGVAVDKAGDQQLVRKVCVNRGMVDKEVKNSVNAYVVF 243
            EA  + ++E     RT+FVGNLP + + K+V+ +FKE+G +ESVR RS+A+AG  +D  G+Q+L +KV  N+ ++  + K++ NAYVVF
Sbjct:  196 EAEVDIDKEKAKERRTIFVGNLPTSISKKRVQNIFKEYGEIESVRFRSMALAGAKIDDHGNQRLAKKVSANKRLLS-DAKDTFNAYVVF 283          
BLAST of mRNA_S-dermatodea_contig12125.1324.1 vs. uniprot
Match: A0A8J2SCC7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SCC7_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.150e-13
Identity = 40/78 (51.28%), Postives = 55/78 (70.51%), Query Frame = 0
Query:  169 RTVFVGNLPITYNPKKVKALFKEHGAVESVRLRSVAVAGVAVDKAGDQQLVRKVCVNRGMVDKEVKNSVNAYVVFKDL 246
            RT+FVGNLP     K++   F+ +GAV+S R RSVAVAG AVD  GD +LV+ VC  +G++  + K + NAYVVF+D+
Sbjct:  107 RTIFVGNLPREATKKQLARFFRPYGAVQSSRKRSVAVAGCAVDTNGDDKLVQSVCARKGLLS-DAKRTTNAYVVFEDV 183          
BLAST of mRNA_S-dermatodea_contig12125.1324.1 vs. uniprot
Match: A0A067CXJ9_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CXJ9_SAPPC)

HSP 1 Score: 79.3 bits (194), Expect = 2.490e-13
Identity = 49/121 (40.50%), Postives = 70/121 (57.85%), Query Frame = 0
Query:  133 VMLCQSCGKKVCRRGKRAKADKEARTE----NEQEXXXXXRTVFVGNLPITYNPKKVKALFKEHGAVESVRLRSVAVAGVAVDKAGDQQLVRKVCVNRGMVDKEVKNSVNAYVVFKDLASV 249
            V+L    G K  ++ K +K   EA+ E     E++     RT+FVGN+ +    +++K  F   G VES RLRSV VAG AVD+ G Q LV+KVC N+ +   E +++ NAYVVF    S+
Sbjct:   82 VVLFDGEGPKKVKKPKHSKVKPEAKVEVAPKEEEDDEKAPRTIFVGNVSLEATAEELKKFFSSCGKVESARLRSVPVAGCAVDQHGKQNLVKKVCANKKLFV-EGRDNCNAYVVFASEDSI 201          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12125.1324.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDC0_9PHAE3.260e-4259.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFV0_ECTSI1.960e-3763.13White-brown-complex ABC transporter family (Partia... [more]
A0A448ZNA7_9STRA2.970e-1850.00Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S3YGS8_HETAK2.900e-1648.31Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4EFG3_9STRA1.440e-1545.83Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A1E7FWD7_9STRA5.120e-1549.43Uncharacterized protein (Fragment) n=1 Tax=Fragila... [more]
A0A1V9ZDC4_9STRA1.180e-1438.06RNA-binding protein n=1 Tax=Achlya hypogyna TaxID=... [more]
W7U9S2_9STRA1.800e-1444.94Rna binding protein n=1 Tax=Nannochloropsis gadita... [more]
A0A8J2SCC7_9STRA1.150e-1351.28Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A067CXJ9_SAPPC2.490e-1340.50Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 135..251
e-value: 3.1E-11
score: 45.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 171..202
e-value: 4.7E-5
score: 23.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 169..251
score: 8.689
NoneNo IPR availablePANTHERPTHR23236EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4Hcoord: 8..245
NoneNo IPR availablePANTHERPTHR23236:SF25RNA-BINDING PROTEIN 34coord: 8..245
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 78..250

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12125contigS-dermatodea_contig12125:1209..6797 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12125.1324.1mRNA_S-dermatodea_contig12125.1324.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig12125 1209..6797 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig12125.1324.1 ID=prot_S-dermatodea_contig12125.1324.1|Name=mRNA_S-dermatodea_contig12125.1324.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=251bp
RRKLEAEKRTEIAEKRAKALADAAAAVVSEGGVSIGSKASSEEGGTVAVA
VLGGDEDEDDEDAVDDDGNGGEEDGDSDDEDDDERDRYDDGDDMIDSDSE
PESVIAGEGGDSSDEEEEVKEEQEGKKVNENSVMLCQSCGKKVCRRGKRA
KADKEARTENEQEADKEARTVFVGNLPITYNPKKVKALFKEHGAVESVRL
RSVAVAGVAVDKAGDQQLVRKVCVNRGMVDKEVKNSVNAYVVFKDLASVE
K
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR035979RBD_domain_sf