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Homology
BLAST of mRNA_S-dermatodea_contig12122.1323.1 vs. uniprot
Match: A0A6H5JT44_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JT44_9PHAE) HSP 1 Score: 244 bits (623), Expect = 1.710e-71 Identity = 155/220 (70.45%), Postives = 184/220 (83.64%), Query Frame = 1
Query: 1 DDGSARAIEPAAAAAAKAAGAHVKALEKKYGTNIKEAQLRFSSALGQGKYGANPTEMDMIMYDIKSFDQQVRKLATGKRLKRFRELLPGLNADKLFTDYPQVIMMDLKKVEERVQGLRELLSGSDVSSAVSIAPDLLLSDVQTCLRPRMTRLVVAMS-VNQLEGVXXXXXXXXXXXXXXXXXXXXXXXVVVPSLQYMLRCTSDHDDLGKRLFRDPSLLAV 657
DDGS +E ++AA K A A++KALE+KYG IKE QLRF+ A+ +GK G NP+E+DMI+YDIKSFDQQVRKLATG RLKRF+ELLPGL+ + LFT+YP V++MDLKKVE++V+ LRELL G V+ VS+APDLLL+DVQTCLRPRMTRLV A++ V Q +G XXXXXXXXXXXXXXXXXXXXXXX VPSLQYML+ TSDHD+L RLFRDPSLL V
Sbjct: 428 DDGS---VEVSSAAEMKEASAYIKALERKYGKIIKETQLRFTPAVRRGKLGDNPSEVDMILYDIKSFDQQVRKLATGYRLKRFKELLPGLDTETLFTEYPNVLLMDLKKVEDKVEELRELLPGERVAGVVSVAPDLLLNDVQTCLRPRMTRLVAALTTVKQFQGXXXXXXXXXXXXXXXXXXXXXXXXXXVPSLQYMLQSTSDHDELATRLFRDPSLLVV 644
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 244.6 |
| Seed ortholog evalue | 4.3e-62 |
| Seed eggNOG ortholog | 2880.D7FSD0 |
| EggNOG free text desc. | mTERF |
| EggNOG OGs | 2F0DX@1,2T1JT@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 657 |
| Cds size | 657 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12122.1323.1 >prot_S-dermatodea_contig12122.1323.1 ID=prot_S-dermatodea_contig12122.1323.1|Name=mRNA_S-dermatodea_contig12122.1323.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=219bp
DDGSARAIEPAAAAAAKAAGAHVKALEKKYGTNIKEAQLRFSSALGQGKY GANPTEMDMIMYDIKSFDQQVRKLATGKRLKRFRELLPGLNADKLFTDYP QVIMMDLKKVEERVQGLRELLSGSDVSSAVSIAPDLLLSDVQTCLRPRMT RLVVAMSVNQLEGVLDADKVKSMVVRCPQLLLSDVRNVVVPSLQYMLRCT SDHDDLGKRLFRDPSLLAV back to topmRNA from alignment at S-dermatodea_contig12122:109..6707+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig12122.1323.1 ID=mRNA_S-dermatodea_contig12122.1323.1|Name=mRNA_S-dermatodea_contig12122.1323.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6599bp|location=Sequence derived from alignment at S-dermatodea_contig12122:109..6707+ (Saccorhiza dermatodea SderLu1190fm monoicous) GACGACGGGAGCGCGAGGGCCATCGAGCCCGCGGCGGCCGCGGCGGCGAA
AGCGGCGGGGGCTCACGTGAAAGCGTTGGAGAAGAAGTATGGCACCAACA
TCAAGGTGTCAGCGCCTCCCGTTGTCGAGACACCCCTTGCGTTGTAGTAT
TGTACAAGTAATCGAGGATTGATTGGTTGATTGGTGTTATTGATTTGCGT
GATTGTCAATGGATTGGTGCTTCATTTATTGACTACAAAAGTGGCTAGCC
ACGGGTATGCACGCCCGTGAGGTGTGCGTTGGCTGGCGATATATAATGTG
GGTTTGGAAAATCAGGCCACTATTGAACTCTGTAAATTACTATGATACTC
TAAAACCCTATTATCAAAAGTGTAAAGGTGTTAAGAGACTACACTGTTCT
CCACATATGATACCGGCCTCAAAGTTTTGCATCAAGGCTCCACTCTAACA
TCTACATAAAAAACGTGCAAAGCCTCAGTAATTATTATTAAAAAATTATC
ACAACTATTAAAGCTGCAGATTTTTCACTGTTTCTAAAAAGTTAATGTTT
CTGAATGATATATAACATAGCATTTGAAAAAACAGCTAAAACAAACAAAT
GCGGTGAAACCTTGGCGTTTTAATATTTTCTTCGCGTGCCTGTGGGATTG
GGGGCGCAGGAGGCCCAGCTTCGATTCAGCTCGGCGCTGGGCCAGGGCAA
GTACGGCGCTAACCCGACGGAGATGGACATGATAATGTACGACATCAAGT
CCTTCGACCAGCAGGTAGGCGGGATGTGGGGAGGATTTGCTGCTATTAAA
TGAAAAAGCGAAGGACTCTGATCGGAATGTGGGTTTTCGACGTTCGGTAA
GAATATTACCCTTCTGAGGGACTGTCGACTGCATGATGAAGTTGGAAATG
AATCTTGCATTGCATTGCACCGACAGCCACGCCTACATCAGTCAGTCAGC
GTTGGTCAGCTAACGGTGGGTTGTAGCCAGCGCGTCGCCTGCTGGGGAAG
ATAGCACAGCAGGGTGGACTGCATCGATACACCATATTCGAGAGATAAGT
ACAAAGGGTAGGATTTCAGAACTGAAATCTGAGTTTTGTATGAGCGAGAG
TACCAGTCTTTTGGATCGTTCCGAGAATCGTTCCGAGGATCGTTCTGAGA
GTGCGCCACTATCCGAATTGGTCGGAGTGTAGCCACCCTGTTTTCGACTT
ACTTGTCGATTCGTCGTCTATCTCACCACGCGCGAGTTAGCGGGATCGGC
AACCATGTGGTGGGGATGCGGTCAGTTGAAAATGTGTTAAATAAACCAAT
CAATCAATCAATCTATCTATCTATTAATATCTATCTATCTATCTATCAAT
CTATCAAATCGAATCAATCAAACAATCAATCGATCAATCGATCAATGCGT
CGAATCCTTTGGTGGGGGCCGGTCGGTCGTTTGAAAGTGTGTCAAATAAA
TAAATAAATAAATCAATCAATCAAGCAATCAAGCAATCGATCACTGTGTC
GAATCCTCTCCGCTCTTGCTTCTCAGGTGAGGAAGCTGGCGACAGGGAAG
CGTTTGAAGAGGTTCCGGGAGCTGCTACCGGGGCTCAACGCTGACAAGCT
CTTCACAGATTACCCGCAAGTGATTATGATGGACCTCAAGAAGGTATTAA
TAATAATGTATGGTATATGTCAGAGCCGAGCACGTTTTTTTATTTTTTTT
TATCTTATGCCACATAAATATTTTCTCAATCACTACACAGTAGCTCTACC
GCTTTGCACGTTTTTTAGTAGAGATTTAGAGTAGACCTTTGATGCCGAAT
TTACTATACAATTCGTGATGCAAAATGTCATGTCACAGGGATTTTATAGT
GGTACCTCACAGAGCAATAAGTTGTGCCAACGCACACTTCACGGGCGTAG
TAGCCGTGGCTACCCACTTATTTTATTAAAATAGTACGATATTAATTGCG
GCTTTCTGTATATATATGTGTTTGTGTGTGTGTGTGTGTGTTTTTTTTTT
TTCTTTCGCACGTTCGTGCTTTTCCGCGAAATTCGTTTTTTGTCTCTCGT
ACCGCGTTTTTCTTGCTGAATTTTCCTGTGAAATACATCCACGTAAGAAG
TAAGTGTGAAATACATCAACGTAAGAAGTAAGTGCGCATCAAGTACAAGT
ATTAGTATTTTGTACATGCAGAACACAAAATAACCGGAACAAGATGCAAA
AATCACATGTATAAACCCTTCTGCTGTTACAATATTCTCAACATCCATCC
TCATTACTGCGAGGCTTGAAGCCCGCCTCAAACTACCCCCGGAGATGCGA
TGTCGAACCCTCCGCACCCTTAAAGCATCCACCACTCCGTGGCCTTAACA
ATTTCCGGCATCATCATTTTGCATATTCATCTGACCGCGGCATTATTGTG
CACTGCTTGTCTCGAGAGCGCCTCGATCGGCTCTCCGAGCATCGCCATCA
CATCAAAAAGCTTGTCCTCCCTACATCGAGGCAATGCATCGATCCGTCCA
TCCGCAACGTTATCGGAACATTCTCCGAACGTTTTGTTTCTCCAACCGAT
TCTCTGAACATGCTACAAAATAGACCGATACTCTCGCTCGTAAAAAATCC
AGATTCCAGCTCTGGAATCCTCCCCCTTCTGCTGGTAACTTAATTATCCT
CCCTACATGCTGTATTTTTCATCTCTGGGATACTCTTTCTTATTTCTTGT
ACCATAGTAAGTACCAGGGACGGTACGATGTATAGTAGNNNNNNNNNNAA
GTCGGGTCGGATTAAGCCGATCGGCTATACGTGTGCAAACCAATCAATCA
ATCAATCAATCAATCAATGCTGTATTTTACATCTACTACTCTATACAAGT
ATACACCTACTACAACCTGTAATACTGGTATTTTTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGGTTCTTTCAGGTGGAAGAGCGAGTGCAGGGTCTC
CGCGAGCTCTTGTCGGGATCGGATGTCTCGAGCGCGGTGTCGATCGCCCC
GGATCTCCTCCTCAGCGACGTGCAGACTTGCCTGCGGCCTCGCATGACCC
GGCTAGTTGTGGCGATGTCGGTTAACCAGCTGGAAGGGGTCTTGGACGCT
GACAAGGTTCGATACTTAAAAATAAATATAACAATCTACTTGTATATTAT
TAAAAAAATATTAATGTTAGTATTAATATCAATATTTGTATTACCGGTAC
GGGGTAGAGTAGAGCATATGTAACACTATTACTATTAATATGAGGAGCTT
CAGCAGAATTATGATCAACGCACGGAGCACCAGCACACTCCCTGATCACA
GGCGCCCGGAGACAGCGCTCCGCTTGACCCCAGATGGGTTGATGGCCACG
ATAAGTAACACCCGACACCGAAGACATGTACATGATTACAATAAAGCCAT
GATCGAACAAGCACTGATTGTGATTGCAGGAGAGAGTAGGTGTCCGCCCT
AAATGGCTGGTCACAGTCTACTCAGTGAATAATACCGTTACCCCTGAACC
GCAACATGATACGTATTGGCGGTCTGACTCAGTCACGCCGTTACACCCGA
GCCGCAACAGTATGTACTACGTTATCCAGGCTGTCCTGCACGATCACCAC
AGGTTACCCGTTGGCATATCCGGTTTGCCGTCGCAAGCCTGCCCGGCCTA
AAGGGGGTGGATTCCAGAAGTGAAAATGTGAATTTTGTAAGAGCGAGAGT
ATCGGTCTGGTTGTTGCATGTTGAGAGAATTGGCAGGAGAAACGTTCGAT
AATGTTCCGATAATGTTACGGATGGATGCATTGCCTCGAGGTTCTAGAAG
GCGTATGATGGTTATAGTTATAGTTATAGTTGCAGTTATAGGTATGGTTA
TAGTTACAGTTATAGTTTAGGTATAGTTATAGTTATAGTTATGGTTATAG
TTATAGTTATGGTTATAGTTATAGTTATGGTTGTAGTTATAGCTGTAGTT
ATAGTTATAGTTGTAGTTGTAGTTGTAGTTGTAGGTGTAGTTGTAGTTAT
GGTTATAGTTATAGTTATAGTTATAGTTATAGTTATAGTTATGGTTATAG
TTATAGTTATGGTTATAGTTATAGTTATAGTTATAGTTATAGTTATAGTT
ATGGTTATAGTTATAGTTATAGTTATAGTTATAGTTATAGTTACAGTTAT
GGTTATAGTTATAGTTATAGTTATAGTTATAGTTATAGTTATAGTTATAG
TTATAGTTATGGTTATAGTTATAGTTATGGTTATAGTTATAGTTATGGTT
GTAGTTATAGCTGTAGTTATAGTTATAGTTGTAGTTGTAGTTGTAGTTGT
AGTTGTAGGTGTAGTTGTAGGTGTAGTTGTAGTTATGGTTATAGTTATAG
TTATAGTTTATAGTTATAGTTATAGTTATAGTTATGGTTATAGTTATAGT
TATAGTTATGGTTATAGTTATAGTTATAGTTATGGTTATAGTTATAGTTA
TAGTTATAGTTATAGTTATGGTTATAGTTATAGTTATGGTTATAGTTATA
GTTATAGTTACAGTTACATTTATAGTTATAGTTATAGTTATAGTCACCCC
AGCATAGTTACCCCAGCCAGTCTGCACTGGTGTCGCAGTAGAGGTCAGGC
TACAGTAGTGCACAACGCCGAGGGCTACAGTAGTTGGAAGGACAGCCGGT
CGAACAACAACAACTGCTGTCTATTAATAGTGAGCAGGACTACTGCCGCT
GTCGGTTTGGCGTCGCAAGCCTGGCCGGCGAAAACCCGGTTTATCGATCC
GTCCCGGCATTGCTGGGATACGTCGTCTACCTCCGTTTGGATACACACGG
CATGCGTTAAACAATATACCCCCCTGAAAACTGTAAATACCCCCCCCCCC
CTAGAGAGAGTTTTGACGCGTGGGACAGCCAGACGAGGGCGGTAGCTATA
TTGTACCGGGGGATAAGAAGTAGCTTGAGAAGGCCACAAGTGACGTAGAC
AGGATAGGAAAAACATATTTGCGCCACCTTTGGCAGGGTAGGAAGGAGCG
ATTGGCCACATCGGTGATCGCACTAGTTGGAACAAAGCTCCGTCCTCTCG
AGGACGCGTGGTCGATGGTCTATCTAACAGCTGGCATGCAGAACATGAGT
ACGCCCCCCCCCCCCCGCCCAGTTAACGCATCACATCCTACAGGACACGT
CTGCTGAACTTTGGATTGTTGGAACGTCTTAGAGCAACCGTTGACTTATG
AATGGCACTCCGCCAGGAGTACTCATGAGCAAATTATAGTCCGAGTGTAT
CACATATATATACCGTCATGTGTTTTGTGTGCGTGCGGTGCTCTTGCATT
CGCACGGTGATCAAAGTCCCGTTGCGGTACTTGGAGTACAGTCACGCCTA
CTGAACGTGGCACATTTTGGTTACCCGGTATATGCCCAATCAACCCACGG
CATATCGTCTGGCGTGGCAAACGCAAGGGTGATGACCAGCAGCTGGTCAA
GTATCATCCTTGTGAAACGCAGCCTAGCTTGGCCGGTGAAAACCCGGCAT
ATCGCTCCGTCCCGGCATTGTTGGGACGCGTGGTCTATGTCCGTATGGAT
ACGACATGCGTTTAAGATAGGTACAGCCCACCCAACACACGCCCCCCACC
CCGCCGCCCCACACACNNNNNNNNNNCGCTCAGCTCCGTGTGGGAAAACC
AGGCACGTCCCCCCCCCCCGCCCTTGGGGGGGGGCGCGTGTTTTTTTCTC
TTGGGTACAAAACGTTTGTATTATTGGTACCCCCCCCCCCCCCCCCCCCC
CCCAGTGTATGACTACGTAAACTGGGAATCATTGAAGGTTGAGATAGATC
TGCGTTTGATGCATGCGACAGTCAGACGAAGGCAGTAGCAATACTGGGGG
ATAACAAGTGGCCCGAAAAGTCGAGAATTGAAGTAGATACTTGCCACATA
GATAAGGAAAAACATTTTTGAGACACCTTTGGCAAAGCAGCAAGGAACAA
TTGGCCATCGGCGATCGATCGATAGATAGATCGATCGATCCTGTAGGGAC
AATGCCCCGTCCTGCCGAGGACGGACGCGCACGCGTTGTCAATGGCCTAG
CAGCGTAAGGCGTGCAAAATTTGAGTACCCTCCCCCCCCCCCTAAAAAAA
AATGCGTTGATTTCAAAGACATACAAAGGGCGAGCGTTGGGGTTTCCACC
CTTTCAAGAGTAAATATGGTCCAAGTTGTTAAACACACCTATATGTTAAA
CACACCTATGGAGGCTTACGTCGCGTATGATGCTATGGTTTCATGTCATG
TATGATGTTGCAGGGTTGTTTATTATAGTACACGTGTCTTTGTCCTGAGC
GATATCCTGGTAGTAATGTGTATTTTGTGTCCTTTGCTTTGAGTACCCCC
CCCCCCCCCGCCCCCGCCCCCGCCCCCCCCTGTGTTTTTTTGCCCCTGAT
GATGAACGTTGCCGTGTATTGCCGTATCATAAAATGTCATTGGCGGCAGG
TCAAGTCCATGGTGGTGCGGTGCCCGCAGCTGCTCCTGAGCGACGTGCGC
AACGTGGTGGTGCCGTCTCTGCAGTACATGCTGCGCTGCACGTCGGATCA
CGACGATCTGGGAAAGAGGCTCTTCAGGGACCCCAGTCTTCTCGCGGTG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig12122:109..6707+ >mRNA_S-dermatodea_contig12122.1323.1 ID=mRNA_S-dermatodea_contig12122.1323.1|Name=mRNA_S-dermatodea_contig12122.1323.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at S-dermatodea_contig12122:109..6707+ (Saccorhiza dermatodea SderLu1190fm monoicous) GACGACGGGAGCGCGAGGGCCATCGAGCCCGCGGCGGCCGCGGCGGCGAA AGCGGCGGGGGCTCACGTGAAAGCGTTGGAGAAGAAGTATGGCACCAACA TCAAGGACGACGGGAGCGCGAGGGCCATCGAGCCCGCGGCGGCCGCGGCG GCGAAAGCGGCGGGGGCTCACGTGAAAGCGTTGGAGAAGAAGTATGGCAC CAACATCAAGGAGGCCCAGCTTCGATTCAGCTCGGCGCTGGGCCAGGGCA AGTACGGCGCTAACCCGACGGAGATGGACATGATAATGTACGACATCAAG TCCTTCGACCAGCAGGAGGCCCAGCTTCGATTCAGCTCGGCGCTGGGCCA GGGCAAGTACGGCGCTAACCCGACGGAGATGGACATGATAATGTACGACA TCAAGTCCTTCGACCAGCAGGTGAGGAAGCTGGCGACAGGGAAGCGTTTG AAGAGGTTCCGGGAGCTGCTACCGGGGCTCAACGCTGACAAGCTCTTCAC AGATTACCCGCAAGTGATTATGATGGACCTCAAGAAGGTGAGGAAGCTGG CGACAGGGAAGCGTTTGAAGAGGTTCCGGGAGCTGCTACCGGGGCTCAAC GCTGACAAGCTCTTCACAGATTACCCGCAAGTGATTATGATGGACCTCAA GAAGGTGGAAGAGCGAGTGCAGGGTCTCCGCGAGCTCTTGTCGGGATCGG ATGTCTCGAGCGCGGTGTCGATCGCCCCGGATCTCCTCCTCAGCGACGTG CAGACTTGCCTGCGGCCTCGCATGACCCGGCTAGTTGTGGCGATGTCGGT TAACCAGCTGGAAGGGGTCTTGGACGCTGACAAGGTGGAAGAGCGAGTGC AGGGTCTCCGCGAGCTCTTGTCGGGATCGGATGTCTCGAGCGCGGTGTCG ATCGCCCCGGATCTCCTCCTCAGCGACGTGCAGACTTGCCTGCGGCCTCG CATGACCCGGCTAGTTGTGGCGATGTCGGTTAACCAGCTGGAAGGGGTCT TGGACGCTGACAAGGTCAAGTCCATGGTGGTGCGGTGCCCGCAGCTGCTC CTGAGCGACGTGCGCAACGTGGTGGTGCCGTCTCTGCAGTACATGCTGCG CTGCACGTCGGATCACGACGATCTGGGAAAGAGGCTCTTCAGGGACCCCA GTCTTCTCGCGGTGGTCAAGTCCATGGTGGTGCGGTGCCCGCAGCTGCTC CTGAGCGACGTGCGCAACGTGGTGGTGCCGTCTCTGCAGTACATGCTGCG CTGCACGTCGGATCACGACGATCTGGGAAAGAGGCTCTTCAGGGACCCCA GTCTTCTCGCGGTG back to top
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