prot_S-dermatodea_contig12116.1321.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig12116.1321.1
Unique Nameprot_S-dermatodea_contig12116.1321.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length528
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig12116.1321.1 vs. uniprot
Match: A0A6H5JG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG83_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 6.870e-8
Identity = 48/137 (35.04%), Postives = 71/137 (51.82%), Query Frame = 0 
Query:    4 VVALNQGCEGKG-YVPTLELQLASVQYYIMCRSLATLWVRMEKGTPLSLWAPGASRASSN---------------TRVPAVKTLGATRWSLSANRLSHYSQRALLRDLQCLQFGTEF---ADRLDDVTWPRRLKRLI 121
            +VALN+   GK  Y+ T++LQLASV++ + CRS++TL + +E+GTP  LWA   S  S                  RVP  +    T W+L  + LS  S+ A  ++L+C+ F        D  D V  PR LK ++
Sbjct:    1 MVALNETYGGKQWYISTVQLQLASVEFCVACRSVSTLHLTVEEGTPRHLWADTWSDQSDXXXXXXXXXXXGRSVLVRVPPFRPREVT-WNLPPSMLSEASKDAF-KNLECMSFSDAVERSGDSFDGVALPRGLKSVV 135
[Close]
BLAST of mRNA_S-dermatodea_contig12116.1321.1 vs. uniprot
Match: D8LRD1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRD1_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 1.620e-7
Identity = 40/117 (34.19%), Postives = 60/117 (51.28%), Query Frame = 0 
Query:   20 LELQLASVQYYIMCRSLATLWVRMEKGTPLSLWAPGASRASSNT------RVPAVKTLGATRWSLSANRLSHYSQRALLRDLQCLQFGTEFADRLDDVTWPRRLKRLIIDGRFNLPV 130
            ++LQLAS+Q  I CRS+  L VR+++ TP  LWA    R +         RVP V+    T W LS+ RL    +   L  + C  FG +  D++  + WP  ++ L+    FN P+
Sbjct:    1 MQLQLASLQLCISCRSVPRLHVRVDRSTPTPLWARPPERETRRAKQRRVGRVPVVQARVVT-WKLSSQRLGLSGES--LASVPCFIFGNQGIDQVGGMRWPPAIQTLMFADGFNSPL 114
[Close]
BLAST of mRNA_S-dermatodea_contig12116.1321.1 vs. uniprot
Match: A0A6H5KMU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMU8_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.090e-6
Identity = 44/127 (34.65%), Postives = 64/127 (50.39%), Query Frame = 0 
Query:    2 ALVVALNQGCEGKG-YVPTLELQLASVQYYIMCRSLATLWVRMEKGTPLSLWAPGASRASSN-------TRVPAVKTLGATRWSLSANRLSHYSQRALLRDLQCLQFGTEFADRLDDVTWPRRLKRL 120
            AL +ALNQ     G Y   L+LQLAS+Q  + CR + T  + +E+     LW   A+ A+ +       +RVPA++    T W+L+   + H         +  L FG  F  R+D VTWP  LK+L
Sbjct:   18 ALDIALNQVSGVNGWYTSKLQLQLASLQLCLACRRVPTSHLTVERDVLALLWPHSAAEATRSRLVSLGQSRVPALRPRKVT-WNLATLSMRHCGDA--FESVDVLVFGDSFDYRVDRVTWPPGLKKL 141
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12116.1321.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JG83_9PHAE6.870e-835.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRD1_ECTSI1.620e-734.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMU8_9PHAE2.090e-634.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008615FNIPPFAMPF05725FNIPcoord: 151..192
e-value: 2.3E-5
score: 24.5
coord: 371..413
e-value: 6.2E-6
score: 26.3
coord: 304..345
e-value: 6.1E-6
score: 26.3
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 59..283
e-value: 2.6E-6
score: 28.1
NoneNo IPR availablePANTHERPTHR32134:SF86coord: 96..256
coord: 249..383
coord: 364..515
NoneNo IPR availablePANTHERPTHR32134UNCHARACTERIZEDcoord: 364..515
NoneNo IPR availablePANTHERPTHR32134UNCHARACTERIZEDcoord: 96..256
coord: 249..383
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 131..500

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12116contigS-dermatodea_contig12116:392..2035 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12116.1321.1mRNA_S-dermatodea_contig12116.1321.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig12116 392..2035 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig12116.1321.1 ID=prot_S-dermatodea_contig12116.1321.1|Name=mRNA_S-dermatodea_contig12116.1321.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=528bp
HALVVALNQGCEGKGYVPTLELQLASVQYYIMCRSLATLWVRMEKGTPLS
LWAPGASRASSNTRVPAVKTLGATRWSLSANRLSHYSQRALLRDLQCLQF
GTEFADRLDDVTWPRRLKRLIIDGRFNLPVDGVVWPARLQHLTLAGDFNH
FNQPIAGVKWPASLLCLTLGKNFNQPIVAVVWPAFLEKLTFGTLFNQPIE
RTAWPATLREIKLGFTFNQAICGVVWPASLEDLDFGYLFAQPFTGVVWPS
SLQNLHGLSCNYSLSDVVWPARLRKLQLGRRFDQPIVGVAWPASLESLNF
GDTFNQPVAGVVLPSGLQHLVFGNRFNYPIAGFAWPQALGHLNLGNGFNQ
PIEGALLGSASSLLVYFGNSFNQPIERVVWPPSLICLGFGNSFNQPINRV
RFPGKVSFIRFGDGFNQPLVGVRWPSKMYTLNFGNGFNQPIVGVAWPALS
RLGFGDSFNQDLRKVVWPASLQELRLGNGFNQPIDEVVWPTSLEYLFLGS
SFDQPVDDIEWPASLWPLSLESLKTAR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008615FNIP
IPR032675LRR_dom_sf