mRNA_S-dermatodea_contig12116.1321.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12116.1321.1
Unique NamemRNA_S-dermatodea_contig12116.1321.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12116.1321.1 vs. uniprot
Match: A0A6H5JG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG83_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 6.870e-8
Identity = 48/137 (35.04%), Postives = 71/137 (51.82%), Query Frame = 1 
Query:   10 VVALNQGCEGKG-YVPTLELQLASVQYYIMCRSLATLWVRMEKGTPLSLWAPGASRASSN---------------TRVPAVKTLGATRWSLSANRLSHYSQRALLRDLQCLQFGTEF---ADRLDDVTWPRRLKRLI 363
            +VALN+   GK  Y+ T++LQLASV++ + CRS++TL + +E+GTP  LWA   S  S                  RVP  +    T W+L  + LS  S+ A  ++L+C+ F        D  D V  PR LK ++
Sbjct:    1 MVALNETYGGKQWYISTVQLQLASVEFCVACRSVSTLHLTVEEGTPRHLWADTWSDQSDXXXXXXXXXXXGRSVLVRVPPFRPREVT-WNLPPSMLSEASKDAF-KNLECMSFSDAVERSGDSFDGVALPRGLKSVV 135
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BLAST of mRNA_S-dermatodea_contig12116.1321.1 vs. uniprot
Match: D8LRD1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRD1_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 1.620e-7
Identity = 40/117 (34.19%), Postives = 60/117 (51.28%), Query Frame = 1 
Query:   58 LELQLASVQYYIMCRSLATLWVRMEKGTPLSLWAPGASRASSNT------RVPAVKTLGATRWSLSANRLSHYSQRALLRDLQCLQFGTEFADRLDDVTWPRRLKRLIIDGRFNLPV 390
            ++LQLAS+Q  I CRS+  L VR+++ TP  LWA    R +         RVP V+    T W LS+ RL    +   L  + C  FG +  D++  + WP  ++ L+    FN P+
Sbjct:    1 MQLQLASLQLCISCRSVPRLHVRVDRSTPTPLWARPPERETRRAKQRRVGRVPVVQARVVT-WKLSSQRLGLSGES--LASVPCFIFGNQGIDQVGGMRWPPAIQTLMFADGFNSPL 114
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12116.1321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JG83_9PHAE6.870e-835.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRD1_ECTSI1.620e-734.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12116contigS-dermatodea_contig12116:392..2035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1584
Cds size1584
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924232.1951137-CDS-S-dermatodea_contig12116:391..15251622924232.1951137-CDS-S-dermatodea_contig12116:391..1525Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12116 392..1525 -
1694079111.8330085-CDS-S-dermatodea_contig12116:391..15251694079111.8330085-CDS-S-dermatodea_contig12116:391..1525Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12116 392..1525 -
1622924232.2038167-CDS-S-dermatodea_contig12116:1585..20351622924232.2038167-CDS-S-dermatodea_contig12116:1585..2035Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12116 1586..2035 -
1694079111.8409119-CDS-S-dermatodea_contig12116:1585..20351694079111.8409119-CDS-S-dermatodea_contig12116:1585..2035Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12116 1586..2035 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12116.1321.1prot_S-dermatodea_contig12116.1321.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12116 392..2035 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12116.1321.1

>prot_S-dermatodea_contig12116.1321.1 ID=prot_S-dermatodea_contig12116.1321.1|Name=mRNA_S-dermatodea_contig12116.1321.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=528bp
HALVVALNQGCEGKGYVPTLELQLASVQYYIMCRSLATLWVRMEKGTPLS
LWAPGASRASSNTRVPAVKTLGATRWSLSANRLSHYSQRALLRDLQCLQF
GTEFADRLDDVTWPRRLKRLIIDGRFNLPVDGVVWPARLQHLTLAGDFNH
FNQPIAGVKWPASLLCLTLGKNFNQPIVAVVWPAFLEKLTFGTLFNQPIE
RTAWPATLREIKLGFTFNQAICGVVWPASLEDLDFGYLFAQPFTGVVWPS
SLQNLHGLSCNYSLSDVVWPARLRKLQLGRRFDQPIVGVAWPASLESLNF
GDTFNQPVAGVVLPSGLQHLVFGNRFNYPIAGFAWPQALGHLNLGNGFNQ
PIEGALLGSASSLLVYFGNSFNQPIERVVWPPSLICLGFGNSFNQPINRV
RFPGKVSFIRFGDGFNQPLVGVRWPSKMYTLNFGNGFNQPIVGVAWPALS
RLGFGDSFNQDLRKVVWPASLQELRLGNGFNQPIDEVVWPTSLEYLFLGS
SFDQPVDDIEWPASLWPLSLESLKTAR*
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mRNA from alignment at S-dermatodea_contig12116:392..2035-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12116.1321.1 ID=mRNA_S-dermatodea_contig12116.1321.1|Name=mRNA_S-dermatodea_contig12116.1321.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1644bp|location=Sequence derived from alignment at S-dermatodea_contig12116:392..2035- (Saccorhiza dermatodea SderLu1190fm monoicous)
CACGCGTTAGTTGTCGCCCTGAATCAAGGCTGCGAAGGAAAGGGCTATGT
GCCCACCCTGGAGCTCCAACTGGCGTCGGTGCAGTACTATATCATGTGTC
GGAGCTTGGCTACCCTCTGGGTGCGCATGGAAAAGGGCACACCACTAAGC
CTATGGGCTCCAGGAGCGTCACGAGCAAGCTCCAACACACGCGTGCCGGC
CGTCAAGACGCTTGGCGCAACGAGGTGGTCCCTTTCAGCCAATCGGCTGT
CGCATTATTCACAACGAGCGCTCCTGAGGGACTTGCAATGCCTGCAATTT
GGTACTGAATTCGCGGACAGGCTTGACGACGTGACATGGCCGCGGCGGCT
GAAGCGGCTAATAATCGACGGACGGTTCAACCTGCCCGTCGACGGCGTAG
TGTGGCCTGCACGCCTGCAGCACTTGACACTTGCGGGTGACTTCAACCAT
GTCGTTACCGGAATCGATTGGCCTACCTCTTTGTAGCACCTAGAGCTGTC
GGGGAACGAGTTCAATCAGCCAATCGCGGGAGTCAAGTGGCCGGCATCGT
TGCTATGCCTAACGCTCGGGAAGAATTTCAACCAGCCGATCGTCGCCGTG
GTATGGCCAGCGTTCCTGGAAAAACTTACATTCGGAACCTTGTTCAACCA
GCCTATTGAAAGAACCGCGTGGCCGGCCACCTTGCGGGAAATCAAGCTCG
GGTTTACCTTCAATCAAGCAATCTGCGGAGTGGTGTGGCCGGCCTCGTTG
GAGGACCTGGATTTCGGGTACCTTTTCGCCCAACCCTTCACAGGGGTGGT
ATGGCCTTCTTCCCTGCAGAACTTGCATGGGCTTTCCTGCAATTACTCGC
TTTCCGACGTCGTTTGGCCGGCACGTTTACGGAAGCTGCAACTTGGTCGT
CGCTTTGACCAACCAATCGTCGGTGTTGCGTGGCCGGCTTCCTTGGAAAG
CCTCAATTTCGGAGACACGTTCAATCAGCCTGTTGCTGGAGTTGTGTTGC
CCTCGGGCCTGCAGCACCTGGTCTTCGGGAACCGATTTAACTATCCAATC
GCCGGCTTCGCTTGGCCGCAAGCCCTGGGACACCTTAACCTCGGGAACGG
CTTCAATCAACCTATCGAAGGGGCGCTCCTGGGTTCTGCATCATCCCTGC
TAGTATACTTCGGGAATTCTTTCAACCAACCAATCGAACGGGTCGTGTGG
CCCCCCTCCCTTATATGTCTGGGCTTTGGGAATTCTTTCAACCAACCTAT
TAACAGGGTTCGCTTCCCGGGTAAGGTGTCATTCATCCGGTTCGGGGACG
GCTTCAACCAGCCCCTCGTAGGCGTGCGGTGGCCATCCAAAATGTACACT
CTGAACTTTGGAAACGGATTTAACCAGCCGATCGTTGGAGTTGCATGGCC
AGCCCTGAGCAGGCTGGGTTTCGGGGATAGCTTCAATCAAGATCTCCGGA
AGGTTGTGTGGCCAGCTTCCCTTCAGGAGTTGAGGCTCGGGAACGGTTTT
AACCAACCGATTGATGAGGTGGTGTGGCCGACGTCTTTAGAATATTTGTT
TTTGGGTTCTTCGTTCGACCAACCGGTGGACGACATAGAGTGGCCCGCCT
CACTGTGGCCACTCAGCCTAGAAAGTCTGAAGACTGCTAGGTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12116:392..2035-

>mRNA_S-dermatodea_contig12116.1321.1 ID=mRNA_S-dermatodea_contig12116.1321.1|Name=mRNA_S-dermatodea_contig12116.1321.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3168bp|location=Sequence derived from alignment at S-dermatodea_contig12116:392..2035- (Saccorhiza dermatodea SderLu1190fm monoicous)
CACGCGTTAGTTGTCGCCCTGAATCAAGGCTGCGAAGGAAAGGGCTATGT
GCCCACCCTGGAGCTCCAACTGGCGTCGGTGCAGTACTATATCATGTGTC
GGAGCTTGGCTACCCTCTGGGTGCGCATGGAAAAGGGCACACCACTAAGC
CTATGGGCTCCAGGAGCGTCACGAGCAAGCTCCAACACACGCGTGCCGGC
CGTCAAGACGCTTGGCGCAACGAGGTGGTCCCTTTCAGCCAATCGGCTGT
CGCATTATTCACAACGAGCGCTCCTGAGGGACTTGCAATGCCTGCAATTT
GGTACTGAATTCGCGGACAGGCTTGACGACGTGACATGGCCGCGGCGGCT
GAAGCGGCTAATAATCGACGGACGGTTCAACCTGCCCGTCGACGGCGTAG
TGTGGCCTGCACGCCTGCAGCACTTGACACTTGCGGGTGACTTCAACCAT
CACGCGTTAGTTGTCGCCCTGAATCAAGGCTGCGAAGGAAAGGGCTATGT
GCCCACCCTGGAGCTCCAACTGGCGTCGGTGCAGTACTATATCATGTGTC
GGAGCTTGGCTACCCTCTGGGTGCGCATGGAAAAGGGCACACCACTAAGC
CTATGGGCTCCAGGAGCGTCACGAGCAAGCTCCAACACACGCGTGCCGGC
CGTCAAGACGCTTGGCGCAACGAGGTGGTCCCTTTCAGCCAATCGGCTGT
CGCATTATTCACAACGAGCGCTCCTGAGGGACTTGCAATGCCTGCAATTT
GGTACTGAATTCGCGGACAGGCTTGACGACGTGACATGGCCGCGGCGGCT
GAAGCGGCTAATAATCGACGGACGGTTCAACCTGCCCGTCGACGGCGTAG
TGTGGCCTGCACGCCTGCAGCACTTGACACTTGCGGGTGACTTCAACCAT
TTCAATCAGCCAATCGCGGGAGTCAAGTGGCCGGCATCGTTGCTATGCCT
AACGCTCGGGAAGAATTTCAACCAGCCGATCGTCGCCGTGGTATGGCCAG
CGTTCCTGGAAAAACTTACATTCGGAACCTTGTTCAACCAGCCTATTGAA
AGAACCGCGTGGCCGGCCACCTTGCGGGAAATCAAGCTCGGGTTTACCTT
CAATCAAGCAATCTGCGGAGTGGTGTGGCCGGCCTCGTTGGAGGACCTGG
ATTTCGGGTACCTTTTCGCCCAACCCTTCACAGGGGTGGTATGGCCTTCT
TCCCTGCAGAACTTGCATGGGCTTTCCTGCAATTACTCGCTTTCCGACGT
CGTTTGGCCGGCACGTTTACGGAAGCTGCAACTTGGTCGTCGCTTTGACC
AACCAATCGTCGGTGTTGCGTGGCCGGCTTCCTTGGAAAGCCTCAATTTC
GGAGACACGTTCAATCAGCCTGTTGCTGGAGTTGTGTTGCCCTCGGGCCT
GCAGCACCTGGTCTTCGGGAACCGATTTAACTATCCAATCGCCGGCTTCG
CTTGGCCGCAAGCCCTGGGACACCTTAACCTCGGGAACGGCTTCAATCAA
CCTATCGAAGGGGCGCTCCTGGGTTCTGCATCATCCCTGCTAGTATACTT
CGGGAATTCTTTCAACCAACCAATCGAACGGGTCGTGTGGCCCCCCTCCC
TTATATGTCTGGGCTTTGGGAATTCTTTCAACCAACCTATTAACAGGGTT
CGCTTCCCGGGTAAGGTGTCATTCATCCGGTTCGGGGACGGCTTCAACCA
GCCCCTCGTAGGCGTGCGGTGGCCATCCAAAATGTACACTCTGAACTTTG
GAAACGGATTTAACCAGCCGATCGTTGGAGTTGCATGGCCAGCCCTGAGC
AGGCTGGGTTTCGGGGATAGCTTCAATCAAGATCTCCGGAAGGTTGTGTG
GCCAGCTTCCCTTCAGGAGTTGAGGCTCGGGAACGGTTTTAACCAACCGA
TTGATGAGGTGGTGTGGCCGACGTCTTTAGAATATTTGTTTTTGGGTTCT
TCGTTCGACCAACCGGTGGACGACATAGAGTGGCCCGCCTCACTGTGGCC
ACTCAGCCTAGAAAGTCTGAAGACTGCTAGGTAATTCAATCAGCCAATCG
CGGGAGTCAAGTGGCCGGCATCGTTGCTATGCCTAACGCTCGGGAAGAAT
TTCAACCAGCCGATCGTCGCCGTGGTATGGCCAGCGTTCCTGGAAAAACT
TACATTCGGAACCTTGTTCAACCAGCCTATTGAAAGAACCGCGTGGCCGG
CCACCTTGCGGGAAATCAAGCTCGGGTTTACCTTCAATCAAGCAATCTGC
GGAGTGGTGTGGCCGGCCTCGTTGGAGGACCTGGATTTCGGGTACCTTTT
CGCCCAACCCTTCACAGGGGTGGTATGGCCTTCTTCCCTGCAGAACTTGC
ATGGGCTTTCCTGCAATTACTCGCTTTCCGACGTCGTTTGGCCGGCACGT
TTACGGAAGCTGCAACTTGGTCGTCGCTTTGACCAACCAATCGTCGGTGT
TGCGTGGCCGGCTTCCTTGGAAAGCCTCAATTTCGGAGACACGTTCAATC
AGCCTGTTGCTGGAGTTGTGTTGCCCTCGGGCCTGCAGCACCTGGTCTTC
GGGAACCGATTTAACTATCCAATCGCCGGCTTCGCTTGGCCGCAAGCCCT
GGGACACCTTAACCTCGGGAACGGCTTCAATCAACCTATCGAAGGGGCGC
TCCTGGGTTCTGCATCATCCCTGCTAGTATACTTCGGGAATTCTTTCAAC
CAACCAATCGAACGGGTCGTGTGGCCCCCCTCCCTTATATGTCTGGGCTT
TGGGAATTCTTTCAACCAACCTATTAACAGGGTTCGCTTCCCGGGTAAGG
TGTCATTCATCCGGTTCGGGGACGGCTTCAACCAGCCCCTCGTAGGCGTG
CGGTGGCCATCCAAAATGTACACTCTGAACTTTGGAAACGGATTTAACCA
GCCGATCGTTGGAGTTGCATGGCCAGCCCTGAGCAGGCTGGGTTTCGGGG
ATAGCTTCAATCAAGATCTCCGGAAGGTTGTGTGGCCAGCTTCCCTTCAG
GAGTTGAGGCTCGGGAACGGTTTTAACCAACCGATTGATGAGGTGGTGTG
GCCGACGTCTTTAGAATATTTGTTTTTGGGTTCTTCGTTCGACCAACCGG
TGGACGACATAGAGTGGCCCGCCTCACTGTGGCCACTCAGCCTAGAAAGT
CTGAAGACTGCTAGGTAA
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