mRNA_S-dermatodea_contig12114.1320.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12114.1320.1
Unique NamemRNA_S-dermatodea_contig12114.1320.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12114.1320.1 vs. uniprot
Match: D8LBY9_ECTSI (MFS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBY9_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 4.840e-54
Identity = 95/101 (94.06%), Postives = 97/101 (96.04%), Query Frame = 1 
Query:   22 EEPVKVPLVSWVSLAMLLLVYVSNQWTRSLVYYVQNFDVATTEATAKEFMNVALGFDETQYGLLASFSFTLLFSTCSLIAGRAVDVVSRKTATVASCLVWS 324
            +  VKVP VSWVSLAMLLLVY+SNQWTRSLVYYVQNFDVATTEATAKEFMNV LGFDETQYGLLASFSFTLLFSTCSLIAGRAVDVVSRKTATVASCLVWS
Sbjct:  127 DSKVKVPWVSWVSLAMLLLVYISNQWTRSLVYYVQNFDVATTEATAKEFMNVGLGFDETQYGLLASFSFTLLFSTCSLIAGRAVDVVSRKTATVASCLVWS 227
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BLAST of mRNA_S-dermatodea_contig12114.1320.1 vs. uniprot
Match: A0A835ZCI8_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCI8_9STRA)

HSP 1 Score: 120 bits (302), Expect = 5.720e-30
Identity = 63/108 (58.33%), Postives = 80/108 (74.07%), Query Frame = 1 
Query:    1 GDDRGTQEEPVKVPLVSWVSLAMLLLVYVSNQWTRSLVYYVQNFDVATTEATAKEFMNVALGFDETQYGLLASFSFTLLFSTCSLIAGRAVDVVSRKTATVASCLVWS 324
            G D G  E+ V+ P  +WV+L +LL+VY+SNQW+R+++ YV NFDV  T   AK++MNVALGF   +YG LAS+ FTLLFS  SL AGRAVD +SRK ATVA+C  WS
Sbjct:   92 GHDGGAGEQ-VQAP--AWVTLGVLLVVYISNQWSRNVLPYVVNFDVPATTENAKDYMNVALGFGAAEYGALASYGFTLLFSASSLAAGRAVDALSRKGATVAACAAWS 196
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BLAST of mRNA_S-dermatodea_contig12114.1320.1 vs. uniprot
Match: A0A7S3XVU5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVU5_HETAK)

HSP 1 Score: 112 bits (279), Expect = 4.760e-28
Identity = 54/107 (50.47%), Postives = 77/107 (71.96%), Query Frame = 1 
Query:    4 DDRGTQEEPVKVPLVSWVSLAMLLLVYVSNQWTRSLVYYVQNFDVATTEATAKEFMNVALGFDETQYGLLASFSFTLLFSTCSLIAGRAVDVVSRKTATVASCLVWS 324
            D RG +E   K+ L  +++L  L+L+Y+ NQW+R+++ Y+ NFD A T   A+EFMNVAL FD+TQ+ LLASF FTLL+S  S+ AGRA DVV++KT  + +  +WS
Sbjct:  109 DVRGGEES--KIELWQYLTLGSLMLIYIHNQWSRTMLVYLVNFDAAATTEAAREFMNVALNFDKTQFSLLASFGFTLLYSVTSIFAGRAADVVNKKTLAIGAATLWS 213
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BLAST of mRNA_S-dermatodea_contig12114.1320.1 vs. uniprot
Match: A0A7S4DJ16_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DJ16_HETAK)

HSP 1 Score: 98.2 bits (243), Expect = 2.820e-24
Identity = 47/95 (49.47%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:   40 PLVSWVSLAMLLLVYVSNQWTRSLVYYVQNFDVATTEATAKEFMNVALGFDETQYGLLASFSFTLLFSTCSLIAGRAVDVVSRKTATVASCLVWS 324
            P   +++LA+L L+YV NQW+RSL+YY+ NFDV  +  +AKEF+N+ L FD   Y LLAS  FT L++  SL AGR  DV SR+     + L WS
Sbjct:   25 PKYPYLALAILALLYVHNQWSRSLIYYLVNFDVKPSVESAKEFINIGLNFDSNSYALLASVGFTALYAVASLAAGRLADVASRRALAAGAALAWS 119
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BLAST of mRNA_S-dermatodea_contig12114.1320.1 vs. uniprot
Match: A0A7S2V282_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V282_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 4.390e-23
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 1 
Query:   52 WVSLAMLLLVYVSNQWTRSLVYYVQNFDVATTEATAKEFMNVALGFDETQYGLLASFSFTLLFSTCSLIAGRAVDVVSR 288
            WV + +LLL YV NQWTR L+ Y  NFDV  T   +KEF+N+ALGF +  Y +LASF FTLLF+ CSL AG+ VD V+R
Sbjct:   63 WVVVGILLLTYVHNQWTRFLLLYTVNFDVVPTVEASKEFINIALGFTQQSYAILASFGFTLLFAFCSLFAGKIVDNVNR 141
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BLAST of mRNA_S-dermatodea_contig12114.1320.1 vs. uniprot
Match: A0A7S1IGW2_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IGW2_9EUGL)

HSP 1 Score: 87.4 bits (215), Expect = 5.370e-18
Identity = 43/102 (42.16%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:   19 QEEPVKVPLVSWVSLAMLLLVYVSNQWTRSLVYYVQNFDVATTEATAKEFMNVALGFDETQYGLLASFSFTLLFSTCSLIAGRAVDVVSRKTATVASCLVWS 324
            +EE  K PL SW++LA LL++YVSNQW+R L+ Y+ NF    +   +   MN A+     QY LL+   FT+ F+  +++AG   D + RK  T+ S LVWS
Sbjct:  199 EEEDPKTPLSSWITLASLLMIYVSNQWSRQLINYICNF----SSTDSFRHMNAAIDMSREQYALLSGAGFTICFALTAIVAGNLTDRLDRKKLTIGSALVWS 296
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BLAST of mRNA_S-dermatodea_contig12114.1320.1 vs. uniprot
Match: A0A7S1YNZ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YNZ0_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.260e-17
Identity = 47/85 (55.29%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:   70 LLLVYVSNQWTRSLVYYVQNFDVATTEATAKEFMNVALGFDETQYGLLASFSFTLLFSTCSLIAGRAVDVVSRKTATVASCLVWS 324
            LLLVYVSNQW+RS +YY+ NF  A T  TA   MNV LGF E QYG LAS +FT LF+  SL AG   D   RK  T  +C+ W+
Sbjct:   69 LLLVYVSNQWSRSSIYYLVNFSDAPT-VTAANAMNVDLGFSEAQYGALASVAFTALFAFASLAAGNLADKSDRKLLTSVACVSWA 152
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BLAST of mRNA_S-dermatodea_contig12114.1320.1 vs. uniprot
Match: A0A7S4VAF9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VAF9_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.540e-17
Identity = 47/85 (55.29%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:   70 LLLVYVSNQWTRSLVYYVQNFDVATTEATAKEFMNVALGFDETQYGLLASFSFTLLFSTCSLIAGRAVDVVSRKTATVASCLVWS 324
            LLLVYVSNQW+RS +YY+ NF  A T  TA   MNV LGF E QYG LAS +FT LF+  SL AG   D   RK  T  +C+ W+
Sbjct:  119 LLLVYVSNQWSRSSIYYLVNFSDAPT-VTAANAMNVDLGFSEAQYGALASVAFTALFAFASLAAGNLADKSDRKLLTSVACVSWA 202
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BLAST of mRNA_S-dermatodea_contig12114.1320.1 vs. uniprot
Match: A0A1Z5J6Y3_FISSO (MFS domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J6Y3_FISSO)

HSP 1 Score: 84.3 bits (207), Expect = 8.530e-17
Identity = 48/97 (49.48%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:   40 PLVSWVSLAMLLL--VYVSNQWTRSLVYYVQNFDVATTEATAKEFMNVALGFDETQYGLLASFSFTLLFSTCSLIAGRAVDVVSRKTATVASCLVWS 324
            P +SW     L L  +Y+SNQW+RS +YY+ +F   + +A A   MNV +GF + QYGLLAS +FT LF+  SL AG A D  +RK  TVAS +VWS
Sbjct:   68 PSISWFWKCCLPLWFIYISNQWSRSSLYYLVDF---SADAQALSAMNVDIGFSQVQYGLLASLAFTALFAVASLGAGIAADRFNRKQLTVASAVVWS 161
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BLAST of mRNA_S-dermatodea_contig12114.1320.1 vs. uniprot
Match: A0A7S1ZVI3_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZVI3_TRICV)

HSP 1 Score: 81.6 bits (200), Expect = 1.450e-16
Identity = 50/90 (55.56%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:   61 LAMLLLVYVSNQWTRSLVYYVQNF--DVATTEATAKEFMNVALGFDETQYGLLASFSFTLLFSTCSLIAGRAVDVVSRKTATVASCLVWS 324
            L  LLLVYVSNQW+RS +YY+ NF  D A +   A   MN+ LGF E QYG LAS +FT LF+  SLIAG   D   RK  TVAS   WS
Sbjct:   91 LLPLLLVYVSNQWSRSSLYYLVNFSDDPAVSPYNA---MNLDLGFTEAQYGALASVAFTALFAVASLIAGNLSDRSDRKLLTVASAASWS 177
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12114.1320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBY9_ECTSI4.840e-5494.06MFS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835ZCI8_9STRA5.720e-3058.33Major facilitator superfamily domain-containing pr... [more]
A0A7S3XVU5_HETAK4.760e-2850.47Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DJ16_HETAK2.820e-2449.47Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2V282_9STRA4.390e-2358.23Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S1IGW2_9EUGL5.370e-1842.16Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S1YNZ0_9STRA1.260e-1755.29Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S4VAF9_9STRA2.540e-1755.29Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1Z5J6Y3_FISSO8.530e-1749.48MFS domain-containing protein n=1 Tax=Fistulifera ... [more]
A0A7S1ZVI3_TRICV1.450e-1655.56Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12114contigS-dermatodea_contig12114:3027..4960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.1
Seed ortholog evalue3.4e-44
Seed eggNOG ortholog2880.D8LBY9
EggNOG free text desc.sphingolipid transporter activity
EggNOG OGsCOG0477@1,KOG1330@2759
Ec32 orthologEc-20_003810.2
COG Functional cat.EGP
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionMajor facilitator superfamily
Ec32 orthologEc-20_003810.1
Exons3
Model size328
Cds size324
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12114.1320.1prot_S-dermatodea_contig12114.1320.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12114 3027..4958 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924232.14409-CDS-S-dermatodea_contig12114:3026..31441622924232.14409-CDS-S-dermatodea_contig12114:3026..3144Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12114 3027..3144 +
1694079111.8082545-CDS-S-dermatodea_contig12114:3026..31441694079111.8082545-CDS-S-dermatodea_contig12114:3026..3144Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12114 3027..3144 +
1622924232.1530895-CDS-S-dermatodea_contig12114:4189..42761622924232.1530895-CDS-S-dermatodea_contig12114:4189..4276Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12114 4190..4276 +
1694079111.8175714-CDS-S-dermatodea_contig12114:4189..42761694079111.8175714-CDS-S-dermatodea_contig12114:4189..4276Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12114 4190..4276 +
1622924232.160459-CDS-S-dermatodea_contig12114:4839..49581622924232.160459-CDS-S-dermatodea_contig12114:4839..4958Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12114 4840..4958 +
1694079111.8251987-CDS-S-dermatodea_contig12114:4839..49581694079111.8251987-CDS-S-dermatodea_contig12114:4839..4958Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12114 4840..4958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12114.1320.1

>prot_S-dermatodea_contig12114.1320.1 ID=prot_S-dermatodea_contig12114.1320.1|Name=mRNA_S-dermatodea_contig12114.1320.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=108bp
GDDRGTQEEPVKVPLVSWVSLAMLLLVYVSNQWTRSLVYYVQNFDVATTE
ATAKEFMNVALGFDETQYGLLASFSFTLLFSTCSLIAGRAVDVVSRKTAT
VASCLVWS
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mRNA from alignment at S-dermatodea_contig12114:3027..4960+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12114.1320.1 ID=mRNA_S-dermatodea_contig12114.1320.1|Name=mRNA_S-dermatodea_contig12114.1320.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1934bp|location=Sequence derived from alignment at S-dermatodea_contig12114:3027..4960+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGGATGATCGGGGTACGCAAGAGGAACCGGTGAAGGTGCCCTTGGTATC
GTGGGTGTCCTTGGCGATGCTGCTGCTGGTGTACGTCAGCAACCAGTGGA
CCAGAAGCCTTGTCTACTGTGAGTCCGAGGGTCGAGGGCGTCCTCAAGAG
TTAGGGAGGGGCCGTTCTTTAATTCCACAGCTCGCTCTTCTACAACAGTA
CTAATAGTATGATATGTGTATTATGATACCCAAGCATTTATTTCGTTTCG
TGTTTGTGATATCATATCGTATATCGTATATCGTATATGGTATATCGTAT
GTACGGATCCTACTATAATATGAACCGGACAGCGAGGTGCACATGAGAAA
GATACGCACGTACTGCTGTACAGACAGCAGTACTTGTACAGTACGTCCAT
ACGGATAGCGGCCGTATTATAGTTTGTACCTCTAGGGCGTTTCCTGCGTG
AATGTGCACATGATACCTCTGGACGTCTCTTAGTGTGTCCCCATTGTAAG
GGTTTGGGCGTGCGTTTGCATACACACACCTCTGGGTGGCGCCACGCGCC
GGATTTATGGCCGTGGGCGCGTTCGCTGCCGTAGTCCACGATCAGTGCTA
TGATAAGCGGTCTATCTACGTCTCCGTTCTTGGTATCCCATCTACTAATA
CGACTATAGCAGCCACTTGCAGTCTACGACACTTGTACAGTATCATACTG
GTACTGTACATTAAAAGGGTTGCGGGAAGGCAAAGCTTTTTTGTGGCGTT
TTACAGCTCCATGCCGCAAGAGCCTCCAACCCTTCTTGGACCAAACCCAC
CTCGAACCTCAAGGTACCTCGAACATCAAGTTTTTTTTTTTTTTTTGGCG
GCAAGGCCGAATGACGCTAAAAACAGTACTGGCGCATAGCAACAATAGGT
CGGCGTGAGGTATAATATCAAGGTAGGTTCACAGGTCCACGCGTTTCGGT
TGGGAGGGCTGCGATGCCGACCTTCGACCGAAAACAGGGCGTCTGGAGCC
CCCCTTCGCTGATCTCGTACGAATCACGCCTAACGCAACAACCATCGCGT
GGCGGCATCTCCTCGCTCTGTCTCCGCCATCCACTATCATAAATAATCGC
GTGCTTCTCATTTCCCTGAATGTGCGTGCGCTTGGTTGGCGTTGGCTGCC
GTGGCGCGAGCAGACGTGCAGAATTTCGACGTGGCGACGACAGAAGCGAC
GGCCAAGGAGTTCATGAACGTCGCCCTAGGGTTCGATGAGACACAGTACG
GTGCGTCCCAAACCCGTCGTGGCCTAGAAATGCAGACAGCACTAACAAAA
CCCGCCGGGCGACATACGACGGGTGGGGTTGCTCTCGTATTGATATCATT
TCGGTCAACGGCCCCGAGTGCTCCCCGACTTCTGCCACCATTTTATATAT
GTCAGTAAGACTTTACAAACGCATTTTTTTTTGTTTTTTAATCGCATACC
TAGTACATTTAATACGTGCCCCTCGAGCGATTCACCGGGCGACGAAAGTT
TCGCATTGGCGTGCGCGCGGTGTTACTGGAGGTGCTGGTGCTTGCCCGGG
ATCCGACCCACCATTCCTTGCCTTCCGCATCAAACCGGAGTTGACCAAAA
GGCCCTCGAGGCATGTACGTGCACAGGCAGAAGGCTTTCCCAAGCATCGT
ATCGTGGCGACCGAGCAATTTCGCGCGGCAGATATAGTCACCCCCTCCCC
CCCCCCCGTCTCCCCAAAGGTTTTTCAAACCTGTTGGGGAGTTCCACCAC
CCCTTTGTGAGGATACGTAACATGGCGCAACCGCAAATTTCACTGAAAAC
GAACGTATACCAGGATTACTGGCGTCGTTCAGCTTCACCCTGCTCTTCAG
CACCTGCAGTCTCATCGCGGGCAGGGCCGTCGATGTCGTGAGCCGCAAGA
CGGCAACGGTGGCCTCTTGCCTCGTGTGGTCCAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12114:3027..4960+

>mRNA_S-dermatodea_contig12114.1320.1 ID=mRNA_S-dermatodea_contig12114.1320.1|Name=mRNA_S-dermatodea_contig12114.1320.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at S-dermatodea_contig12114:3027..4960+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGGATGATCGGGGTACGCAAGAGGAACCGGTGAAGGTGCCCTTGGTATC
GTGGGTGTCCTTGGCGATGCTGCTGCTGGTGTACGTCAGCAACCAGTGGA
CCAGAAGCCTTGTCTACTGGGGATGATCGGGGTACGCAAGAGGAACCGGT
GAAGGTGCCCTTGGTATCGTGGGTGTCCTTGGCGATGCTGCTGCTGGTGT
ACGTCAGCAACCAGTGGACCAGAAGCCTTGTCTACTACGTGCAGAATTTC
GACGTGGCGACGACAGAAGCGACGGCCAAGGAGTTCATGAACGTCGCCCT
AGGGTTCGATGAGACACAGTACGACGTGCAGAATTTCGACGTGGCGACGA
CAGAAGCGACGGCCAAGGAGTTCATGAACGTCGCCCTAGGGTTCGATGAG
ACACAGTACGGATTACTGGCGTCGTTCAGCTTCACCCTGCTCTTCAGCAC
CTGCAGTCTCATCGCGGGCAGGGCCGTCGATGTCGTGAGCCGCAAGACGG
CAACGGTGGCCTCTTGCCTCGTGTGGTCCGATTACTGGCGTCGTTCAGCT
TCACCCTGCTCTTCAGCACCTGCAGTCTCATCGCGGGCAGGGCCGTCGAT
GTCGTGAGCCGCAAGACGGCAACGGTGGCCTCTTGCCTCGTGTGGTCC
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