mRNA_S-dermatodea_contig12110.1317.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12110.1317.1
Unique NamemRNA_S-dermatodea_contig12110.1317.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12110.1317.1 vs. uniprot
Match: D8LSW8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSW8_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 8.740e-30
Identity = 57/72 (79.17%), Postives = 65/72 (90.28%), Query Frame = 2 
Query:   26 TALPPRVSGSSAALGLALPKDRDLFPTVTLNSPNTEVLCRFCVEDLLQVSRESIGAPPGVPVYALDGSLLNL 241
            T LPP V  +SAALGLALPKDRDLFPTVT++SPNTE+LCRFC EDLL V+RE++GAPPG PVYALDGSL+NL
Sbjct:  833 TMLPPDVPETSAALGLALPKDRDLFPTVTIHSPNTEILCRFCAEDLLGVTRENMGAPPGAPVYALDGSLINL 904
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BLAST of mRNA_S-dermatodea_contig12110.1317.1 vs. uniprot
Match: A0A836CEG7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEG7_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.580e-17
Identity = 37/58 (63.79%), Postives = 47/58 (81.03%), Query Frame = 2 
Query:   62 ALGLALPKDRDLFPTVTLNSPNTEVLCRFCVEDLLQVSRESIGAPPGVPVYALDGSLL 235
            A+ L LP+DRDLFPT+TL+SP T+V CRFC  D++  +R  IGAPPGV VYALDGS++
Sbjct:  281 AMALPLPRDRDLFPTLTLHSPLTQVFCRFCAADMVHATRAQIGAPPGVVVYALDGSVV 338
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BLAST of mRNA_S-dermatodea_contig12110.1317.1 vs. uniprot
Match: I2CPI3_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPI3_NANGC)

HSP 1 Score: 78.6 bits (192), Expect = 2.050e-15
Identity = 34/55 (61.82%), Postives = 45/55 (81.82%), Query Frame = 2 
Query:   71 LALPKDRDLFPTVTLNSPNTEVLCRFCVEDLLQVSRESIGAPPGVPVYALDGSLL 235
            L +PKD D++PT+TL+SP+T+VL RFC  D+L   R  +GAPPGVPVYALDGS++
Sbjct:  174 LFIPKDDDIYPTLTLHSPSTQVLGRFCAADILHPHRSLVGAPPGVPVYALDGSVV 228
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BLAST of mRNA_S-dermatodea_contig12110.1317.1 vs. uniprot
Match: A0A7S2UK99_9STRA (Hypothetical protein (Fragment) n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UK99_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 4.200e-15
Identity = 34/60 (56.67%), Postives = 47/60 (78.33%), Query Frame = 2 
Query:   56 SAALGLALPKDRDLFPTVTLNSPNTEVLCRFCVEDLLQVSRESIGAPPGVPVYALDGSLL 235
            +  L L +P++ +LFPTVTL+SP T+V+CRFC ED+   SR +IGAP GV +YA+DGS+L
Sbjct:  180 TTTLPLYVPREEELFPTVTLHSPATQVMCRFCAEDIQATSRSTIGAPIGVVIYAVDGSVL 239
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BLAST of mRNA_S-dermatodea_contig12110.1317.1 vs. uniprot
Match: A0A7S2HHH6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HHH6_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 7.110e-15
Identity = 34/61 (55.74%), Postives = 46/61 (75.41%), Query Frame = 2 
Query:   53 SSAALGLALPKDRDLFPTVTLNSPNTEVLCRFCVEDLLQVSRESIGAPPGVPVYALDGSLL 235
            S + L L +P++ +LFPT+TL+SP TEV+CRF   D+L  SR SIGAP GV +Y +DGS+L
Sbjct:   45 SMSTLPLLVPREEELFPTLTLHSPGTEVMCRFSAGDVLARSRASIGAPSGVTIYGVDGSVL 105
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BLAST of mRNA_S-dermatodea_contig12110.1317.1 vs. uniprot
Match: A0A7S1GME5_CYCTE (Hypothetical protein n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GME5_CYCTE)

HSP 1 Score: 77.8 bits (190), Expect = 1.790e-14
Identity = 35/63 (55.56%), Postives = 49/63 (77.78%), Query Frame = 2 
Query:   53 SSAALGLALPKDRDLFPTVTLNSPNTEVLCRFCVEDLLQVSRESIGAPPGVPVYALDGSLLNL 241
            ++  L L +P + +LFPT+TL+SP TEV+CRF  ED+++ SRESIGAP G  VYA+DGS++ L
Sbjct:  361 ATTTLPLLVPLEEELFPTLTLHSPATEVMCRFSSEDIIETSRESIGAPRGATVYAIDGSVVLL 423
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BLAST of mRNA_S-dermatodea_contig12110.1317.1 vs. uniprot
Match: A0A7S3PZ78_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZ78_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 5.400e-14
Identity = 33/60 (55.00%), Postives = 46/60 (76.67%), Query Frame = 2 
Query:   56 SAALGLALPKDRDLFPTVTLNSPNTEVLCRFCVEDLLQVSRESIGAPPGVPVYALDGSLL 235
            S  + + +P++ ++FPT+TL+S  TEVLCRFC ED+L  SR  IG+P GV VYA+DGS+L
Sbjct:  863 STVIPIFVPREEEIFPTLTLHSSQTEVLCRFCAEDILATSRSMIGSPRGVTVYAVDGSVL 922
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BLAST of mRNA_S-dermatodea_contig12110.1317.1 vs. uniprot
Match: A0A7S0C3E9_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C3E9_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.740e-13
Identity = 33/61 (54.10%), Postives = 47/61 (77.05%), Query Frame = 2 
Query:   53 SSAALGLALPKDRDLFPTVTLNSPNTEVLCRFCVEDLLQVSRESIGAPPGVPVYALDGSLL 235
            S+AAL L +P++ +LFPT+TL SP T+V+CRFC ED++   +  IGAP G  VYA+DG++L
Sbjct:  400 SAAALPLFVPREEELFPTLTLLSPATQVMCRFCAEDIVATKKNLIGAPYGATVYAVDGTVL 460
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BLAST of mRNA_S-dermatodea_contig12110.1317.1 vs. uniprot
Match: A0A7S0XKD6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0XKD6_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.840e-13
Identity = 33/60 (55.00%), Postives = 46/60 (76.67%), Query Frame = 2 
Query:   56 SAALGLALPKDRDLFPTVTLNSPNTEVLCRFCVEDLLQVSRESIGAPPGVPVYALDGSLL 235
            S +L L +P + +L+PT+TL+SP T V+CRF   D+  VSRE+ GAPPGV VYA+DGS++
Sbjct:  689 SCSLPLLVPAEEELYPTLTLHSPGTSVMCRFSAGDVTAVSREATGAPPGVAVYAVDGSIV 748
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BLAST of mRNA_S-dermatodea_contig12110.1317.1 vs. uniprot
Match: A0A1E7F3C2_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F3C2_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.510e-13
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 2 
Query:   11 PSAVITALPPRVSGSSAALGLALPKDRDLFPTVTLNSPNTEVLCRFCVEDLLQVSRESIGAPPGVPVYALDGSLL 235
            P   + A PP     S  L L +P + +L+PT+TL+SP T V+CRF  ED++  SRE IG PP V VYA+DGSL+
Sbjct:  655 PDVPVGATPP-----SFTLPLLVPAEEELYPTLTLHSPGTSVMCRFSAEDIIARSREDIGVPPNVAVYAVDGSLV 724
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12110.1317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D8LSW8_ECTSI8.740e-3079.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CEG7_9STRA3.580e-1763.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
I2CPI3_NANGC2.050e-1561.82Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S2UK99_9STRA4.200e-1556.67Hypothetical protein (Fragment) n=2 Tax=Attheya se... [more]
A0A7S2HHH6_9STRA7.110e-1555.74Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S1GME5_CYCTE1.790e-1455.56Hypothetical protein n=2 Tax=Cyclophora tenuis Tax... [more]
A0A7S3PZ78_9STRA5.400e-1455.00Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S0C3E9_9STRA1.740e-1354.10Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S0XKD6_9STRA1.840e-1355.00Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A1E7F3C2_9STRA2.510e-1349.33Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12110contigS-dermatodea_contig12110:5554..6522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size339
Cds size279
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12110.1317.1prot_S-dermatodea_contig12110.1317.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12110 5614..6522 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924232.0035188-UTR-S-dermatodea_contig12110:5553..56131622924232.0035188-UTR-S-dermatodea_contig12110:5553..5613Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12110 5554..5613 -
1694079111.7448418-UTR-S-dermatodea_contig12110:5553..56131694079111.7448418-UTR-S-dermatodea_contig12110:5553..5613Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12110 5554..5613 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924232.0147774-CDS-S-dermatodea_contig12110:5613..57591622924232.0147774-CDS-S-dermatodea_contig12110:5613..5759Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12110 5614..5759 -
1694079111.7546263-CDS-S-dermatodea_contig12110:5613..57591694079111.7546263-CDS-S-dermatodea_contig12110:5613..5759Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12110 5614..5759 -
1622924232.026319-CDS-S-dermatodea_contig12110:6389..65221622924232.026319-CDS-S-dermatodea_contig12110:6389..6522Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12110 6390..6522 -
1694079111.7637854-CDS-S-dermatodea_contig12110:6389..65221694079111.7637854-CDS-S-dermatodea_contig12110:6389..6522Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12110 6390..6522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12110.1317.1

>prot_S-dermatodea_contig12110.1317.1 ID=prot_S-dermatodea_contig12110.1317.1|Name=mRNA_S-dermatodea_contig12110.1317.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=93bp
CWSAVGRDYRFAAEGLGVVGCARARSAEGQGPLPYGYVKQSQHRGPVPLL
RGRSAASQQREHRRTSRSSRVRSGWEPLEPSLVSKAGGVWLC*
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mRNA from alignment at S-dermatodea_contig12110:5554..6522-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12110.1317.1 ID=mRNA_S-dermatodea_contig12110.1317.1|Name=mRNA_S-dermatodea_contig12110.1317.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=969bp|location=Sequence derived from alignment at S-dermatodea_contig12110:5554..6522- (Saccorhiza dermatodea SderLu1190fm monoicous)
TGTTGGTCGGCCGTCGGCCGTGATTACCGCTTTGCCGCCGAGGGTCTCGG
GGTCGTCGGCTGCGCTCGGGCTCGCTCTGCCGAAGGACAGGGACCTCTTC
CCTACGGTTACGTTAAACAGTCCCAACACCGAGGTGGGCACGCAGGGGGT
GGGGCGGGCGTTATTGTTGAAAAGTTGTGGTCGTTTTTATTTGTTGCGGC
GGGTGAATCTTTCTGAGTGTATGGTAGTTTTTGTATTGTAGGATAGTTTT
TTTTTCTTTACATATGAGTTGGCTCTGGATCGTACCCTGGCTGCGTACCG
TACCTCTAGCCGTGTAGTACGTATACTCGTCGGTTTTTTTCAAGCAAAGG
GCGAAGGCGGTAGTGGTGGTGGTGGCGGTGGTGTTCGTCTGAAGAGAGCG
ACAGAGTTTCTGAAACCGTCACACGAACGTAGGCGGGTTTCTTCGCCACG
TACCCTATATTACTATTATACTGTGTATTATGGTGTGTCGTAGAAGTGGA
GTTCTGATTAGTTATTTTTCCCGTTGACTCTTTGCTATTGCATGTGACCA
CAACTCGAGCCGGATTAAGCCGATCGATCGGCTATACAGTACGTGTTCAA
CTCAATCAATCAATCAATCAATTATCGTCGGAGGCCGTTCCGTTTCATAA
TCGGAACACCCACCGCCTTCCATCTCAAACCAACGAACACCTCGACCGTG
CCCTCCCCCCCCCCCCCCCCCCTCACCTACAATAATCCTGGGTGCCCTTC
GCCGCGCACGCAGGTCCTGTGCCGCTTCTGCGTGGAAGATCTGCTGCAAG
TCAGCAGAGAGAGCATCGGCGCACCTCCCGGAGTTCCCGTGTACGCTCTG
GATGGGAGCCTCTTGAACCTTCTCTAGTGTCGAAGGCAGGCGGGGTTTGG
CTCTGTTGAGAGCTGAACTTGCTTGCTCGCGCGGGCCGCGCGCCGCCGCG
TGGATGCCGTAGCTTCGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12110:5554..6522-

>mRNA_S-dermatodea_contig12110.1317.1 ID=mRNA_S-dermatodea_contig12110.1317.1|Name=mRNA_S-dermatodea_contig12110.1317.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at S-dermatodea_contig12110:5554..6522- (Saccorhiza dermatodea SderLu1190fm monoicous)
TGTTGGTCGGCCGTCGGCCGTGATTACCGCTTTGCCGCCGAGGGTCTCGG
GGTCGTCGGCTGCGCTCGGGCTCGCTCTGCCGAAGGACAGGGACCTCTTC
CCTACGGTTACGTTAAACAGTCCCAACACCGAGTGTTGGTCGGCCGTCGG
CCGTGATTACCGCTTTGCCGCCGAGGGTCTCGGGGTCGTCGGCTGCGCTC
GGGCTCGCTCTGCCGAAGGACAGGGACCTCTTCCCTACGGTTACGTTAAA
CAGTCCCAACACCGAGGTCCTGTGCCGCTTCTGCGTGGAAGATCTGCTGC
AAGTCAGCAGAGAGAGCATCGGCGCACCTCCCGGAGTTCCCGTGTACGCT
CTGGATGGGAGCCTCTTGAACCTTCTCTAGTGTCGAAGGCAGGCGGGGTT
TGGCTCTGTTGAGTCCTGTGCCGCTTCTGCGTGGAAGATCTGCTGCAAGT
CAGCAGAGAGAGCATCGGCGCACCTCCCGGAGTTCCCGTGTACGCTCTGG
ATGGGAGCCTCTTGAACCTTCTCTAGTGTCGAAGGCAGGCGGGGTTTGGC
TCTGTTGA
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