mRNA_S-dermatodea_contig1211.1316.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1211.1316.1
Unique NamemRNA_S-dermatodea_contig1211.1316.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1211.1316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1211contigS-dermatodea_contig1211:10746..11300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size555
Cds size546
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924231.9543235-CDS-S-dermatodea_contig1211:10745..112911622924231.9543235-CDS-S-dermatodea_contig1211:10745..11291Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1211 10746..11291 +
1694079111.7218451-CDS-S-dermatodea_contig1211:10745..112911694079111.7218451-CDS-S-dermatodea_contig1211:10745..11291Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1211 10746..11291 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924231.968213-UTR-S-dermatodea_contig1211:11291..113001622924231.968213-UTR-S-dermatodea_contig1211:11291..11300Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1211 11292..11300 +
1694079111.7321608-UTR-S-dermatodea_contig1211:11291..113001694079111.7321608-UTR-S-dermatodea_contig1211:11291..11300Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1211 11292..11300 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1211.1316.1prot_S-dermatodea_contig1211.1316.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1211 10746..11291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1211.1316.1

>prot_S-dermatodea_contig1211.1316.1 ID=prot_S-dermatodea_contig1211.1316.1|Name=mRNA_S-dermatodea_contig1211.1316.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=182bp
MVRCPTGGALHWSWRVDWHRIFSGPPHEPVSGIGQSCSWSVNVNTKEREQ
ISESRDQRAESGERRVRAKAKLLRVVFSIDCGPSPNKTEHAIIHTAVELY
CCRYYTEVHVCLPGQITALLIQISHLCDRRLCSRFYRSGNSPPPSSLLSC
STASCASGYRYYSTSGLITIVIIGQSIDAIV*
back to top

mRNA from alignment at S-dermatodea_contig1211:10746..11300+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1211.1316.1 ID=mRNA_S-dermatodea_contig1211.1316.1|Name=mRNA_S-dermatodea_contig1211.1316.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=555bp|location=Sequence derived from alignment at S-dermatodea_contig1211:10746..11300+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGAGATGCCCGACGGGCGGAGCGTTGCATTGGTCGTGGAGGGTTGA
CTGGCATCGTATTTTTTCAGGGCCTCCTCATGAACCCGTGTCCGGGATTG
GCCAAAGTTGCTCCTGGAGTGTCAACGTGAACACGAAGGAAAGGGAGCAG
ATATCAGAGAGCAGAGATCAGAGAGCGGAGAGCGGAGAGCGGAGAGTAAG
AGCGAAAGCGAAGTTACTGCGAGTTGTGTTTTCGATTGATTGTGGTCCAA
GCCCAAACAAAACCGAACACGCTATTATACACACTGCTGTAGAGCTCTAC
TGCTGTAGATACTACACTGAGGTCCACGTTTGTCTCCCGGGACAAATCAC
AGCGCTCTTGATTCAAATTTCCCACCTGTGTGATCGGCGGCTCTGTTCCC
GATTCTATCGTAGCGGCAACAGCCCTCCCCCCTCGTCTTTGCTCAGCTGC
AGCACCGCCAGTTGCGCTTCAGGCTACCGGTATTATAGTACATCCGGATT
GATTACAATAGTTATAATAGGACAATCAATAGACGCAATCGTTTAACAAA
AGCGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig1211:10746..11300+

>mRNA_S-dermatodea_contig1211.1316.1 ID=mRNA_S-dermatodea_contig1211.1316.1|Name=mRNA_S-dermatodea_contig1211.1316.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1092bp|location=Sequence derived from alignment at S-dermatodea_contig1211:10746..11300+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGAGATGCCCGACGGGCGGAGCGTTGCATTGGTCGTGGAGGGTTGA
CTGGCATCGTATTTTTTCAGGGCCTCCTCATGAACCCGTGTCCGGGATTG
GCCAAAGTTGCTCCTGGAGTGTCAACGTGAACACGAAGGAAAGGGAGCAG
ATATCAGAGAGCAGAGATCAGAGAGCGGAGAGCGGAGAGCGGAGAGTAAG
AGCGAAAGCGAAGTTACTGCGAGTTGTGTTTTCGATTGATTGTGGTCCAA
GCCCAAACAAAACCGAACACGCTATTATACACACTGCTGTAGAGCTCTAC
TGCTGTAGATACTACACTGAGGTCCACGTTTGTCTCCCGGGACAAATCAC
AGCGCTCTTGATTCAAATTTCCCACCTGTGTGATCGGCGGCTCTGTTCCC
GATTCTATCGTAGCGGCAACAGCCCTCCCCCCTCGTCTTTGCTCAGCTGC
AGCACCGCCAGTTGCGCTTCAGGCTACCGGTATTATAGTACATCCGGATT
GATTACAATAGTTATAATAGGACAATCAATAGACGCAATCGTTTAAATGG
TGAGATGCCCGACGGGCGGAGCGTTGCATTGGTCGTGGAGGGTTGACTGG
CATCGTATTTTTTCAGGGCCTCCTCATGAACCCGTGTCCGGGATTGGCCA
AAGTTGCTCCTGGAGTGTCAACGTGAACACGAAGGAAAGGGAGCAGATAT
CAGAGAGCAGAGATCAGAGAGCGGAGAGCGGAGAGCGGAGAGTAAGAGCG
AAAGCGAAGTTACTGCGAGTTGTGTTTTCGATTGATTGTGGTCCAAGCCC
AAACAAAACCGAACACGCTATTATACACACTGCTGTAGAGCTCTACTGCT
GTAGATACTACACTGAGGTCCACGTTTGTCTCCCGGGACAAATCACAGCG
CTCTTGATTCAAATTTCCCACCTGTGTGATCGGCGGCTCTGTTCCCGATT
CTATCGTAGCGGCAACAGCCCTCCCCCCTCGTCTTTGCTCAGCTGCAGCA
CCGCCAGTTGCGCTTCAGGCTACCGGTATTATAGTACATCCGGATTGATT
ACAATAGTTATAATAGGACAATCAATAGACGCAATCGTTTAA
back to top