prot_S-dermatodea_contig12109.1314.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig12109.1314.1
Unique Nameprot_S-dermatodea_contig12109.1314.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length91
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig12109.1314.1 vs. uniprot
Match: A0A836CJA3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJA3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.460e-11
Identity = 31/55 (56.36%), Postives = 37/55 (67.27%), Query Frame = 0 
Query:   13 DCLSCRIIGATTMLGVSAYGLVTRAQTPMAQRGNRAFLLGVSGLFAAAGIARAVW 67
            DCLSC+IIG+ T LG+S Y  +   QTP AQ GNR F+   +  FA  GIARAVW
Sbjct:    9 DCLSCKIIGSCTFLGLSGYTFMHYLQTPKAQVGNRMFMAAAAVGFAGVGIARAVW 63
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12109.1314.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CJA3_9STRA2.460e-1156.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 68..90
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..47
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 48..67
NoneNo IPR availableTMHMMTMhelixcoord: 48..67
NoneNo IPR availableTMHMMTMhelixcoord: 15..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12109contigS-dermatodea_contig12109:2231..4396 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12109.1314.1mRNA_S-dermatodea_contig12109.1314.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig12109 2149..4426 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig12109.1314.1 ID=prot_S-dermatodea_contig12109.1314.1|Name=mRNA_S-dermatodea_contig12109.1314.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=91bp
MSGSAKDSGKSTDCLSCRIIGATTMLGVSAYGLVTRAQTPMAQRGNRAFL
LGVSGLFAAAGIARAVWPDSHTLDDNNSRRPQQQQQQQPP*
back to top