mRNA_S-dermatodea_contig12109.1314.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12109.1314.1
Unique NamemRNA_S-dermatodea_contig12109.1314.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12109.1314.1 vs. uniprot
Match: A0A836CJA3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJA3_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 5.840e-11
Identity = 31/55 (56.36%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:   67 DCLSCRIIGATTMLGVSAYGLVTRAQTPMAQRGNRAFLLGVSGLFAAAGIARAVW 231
            DCLSC+IIG+ T LG+S Y  +   QTP AQ GNR F+   +  FA  GIARAVW
Sbjct:    9 DCLSCKIIGSCTFLGLSGYTFMHYLQTPKAQVGNRMFMAAAAVGFAGVGIARAVW 63
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12109.1314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CJA3_9STRA5.840e-1156.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12109contigS-dermatodea_contig12109:2149..4426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size385
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12109.1314.1prot_S-dermatodea_contig12109.1314.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12109 2231..4396 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924231.8192065-UTR-S-dermatodea_contig12109:2148..22301622924231.8192065-UTR-S-dermatodea_contig12109:2148..2230Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12109 2149..2230 -
1694079111.6222365-UTR-S-dermatodea_contig12109:2148..22301694079111.6222365-UTR-S-dermatodea_contig12109:2148..2230Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12109 2149..2230 -
1622924231.8501518-UTR-S-dermatodea_contig12109:4396..44261622924231.8501518-UTR-S-dermatodea_contig12109:4396..4426Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12109 4397..4426 -
1694079111.649507-UTR-S-dermatodea_contig12109:4396..44261694079111.649507-UTR-S-dermatodea_contig12109:4396..4426Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12109 4397..4426 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924231.8306649-CDS-S-dermatodea_contig12109:2230..24561622924231.8306649-CDS-S-dermatodea_contig12109:2230..2456Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12109 2231..2456 -
1694079111.6312752-CDS-S-dermatodea_contig12109:2230..24561694079111.6312752-CDS-S-dermatodea_contig12109:2230..2456Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12109 2231..2456 -
1622924231.8400776-CDS-S-dermatodea_contig12109:4349..43961622924231.8400776-CDS-S-dermatodea_contig12109:4349..4396Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12109 4350..4396 -
1694079111.6405282-CDS-S-dermatodea_contig12109:4349..43961694079111.6405282-CDS-S-dermatodea_contig12109:4349..4396Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12109 4350..4396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12109.1314.1

>prot_S-dermatodea_contig12109.1314.1 ID=prot_S-dermatodea_contig12109.1314.1|Name=mRNA_S-dermatodea_contig12109.1314.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=91bp
MSGSAKDSGKSTDCLSCRIIGATTMLGVSAYGLVTRAQTPMAQRGNRAFL
LGVSGLFAAAGIARAVWPDSHTLDDNNSRRPQQQQQQQPP*
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mRNA from alignment at S-dermatodea_contig12109:2149..4426-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12109.1314.1 ID=mRNA_S-dermatodea_contig12109.1314.1|Name=mRNA_S-dermatodea_contig12109.1314.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2278bp|location=Sequence derived from alignment at S-dermatodea_contig12109:2149..4426- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCACTGACGCTCCCACCTACATAGACATCATGTCTGGGAGCGCGAAGGA
CTCAGGAAAGAGTACCGATTGCTTGAGGTGAGCTTCGGATGGCGCTGACC
TTTGGTTGCTTTTTAGACGTCCAAATGTAGACTATGCATCGATCCATAAC
GTCGAACCTCTTTTGAGGTTGACAGCAGTAGTTGACAGTCCCGCCGCGAG
GCTGCGACTCCGTCTGTGTCAAATTGCAAATAAAACATAATCTAGTTCAC
CTGTACATCCCTAACTCACGGGCACACTCCAGGGGGGACCGAGAGTAGGT
ACGTCCTTTATTCTCTCTCAGTAAGGCATATGTGCAAGGGGGGACTGACC
TGTAAGTGCACAGTTGAAACTAGTGTTTATACTTCGCGCCACAAGAAAAA
CACCACCTCCAAATCGTGAGTCGTCATGACTCCCAGCGCATCATATATAT
GTACTGCCGGTCAACAGAGTTCTCGGGCGGTATCCCACCAGTAATTCTGT
ACATGTGCATACGATTTGGGTCCGTCTGTTATATTATACTTCGTATACCG
GTATCAGATATACCCAGAGCGCGGCAAGAAGAAGATCCAACAAGTTTGAC
GCGAAGGAACACCTTGCGGGCGCGTCCCATATTCGCGCGACGAAACGCTC
ACACTGCACCCCATTACACAGATCAGTGAAGGACGCGGGGTATGTATAGG
TATGCAATAGACCATCACAGACCCCATTACACAGATCAATGAAGGACGCG
GGGTATGTATAGGTATGCAATAGACCATCACAGATCTGTGCGCAACCTTT
TAGCCTCGTCGTCACAGGAGCAGGAGCACAGCAGTAGTATTATTGATTGT
AGTCTATACCCCACTCTTGCGTATATATCTCTGTTTCGCACACTCTGTCC
TGAGCTCTCCCTGAGCGCAACCTTCGAGCTTCCTGCCCACAGGAGCAGTA
CATCCGCATTCAGCTGGTCCACCTGACTCTTGTGTTATCTCTGTGTCGTT
TGCACTCTGCCTGGAGCAACAGCCTATCTACTACCACACCCTCGCGTGTA
ACACGCGCGGGCGCGCGCTCGTGTTCCTATTCGCGCGATACTTTGAACTC
AGTTAGAAAAGGAGTGGACCTGAGGGCTATGACATTATAAGTTATATCAA
ATCCGAATGCCACTTTAGGGGGGTCCTTTTTTTTTGCAGTTTGGCACGCT
GATAACGTGCCGAGGCCGGTAGCTGTGCAGACATGCGTTCTTGCAGCGGC
TGGGTGTTAGAGTCAGGCACCTCTCCTCCAAATTTCATCGCGTAGTTTGA
AGAGTTTGGGAAGTGCGACCGGCCAACGCGGCCGAAATGTACAGAAACAT
AAATTCTTGGTTTATTTGGACCCTGTGCAGGATGCCGCGCAATTAATGCC
TCTTGGATAAAACGTGACCCGGTACGAAAGGCGTCAACGCCTGGCTTCGC
TCGGCGTTGCCACCCCTATAAGGCTAGTGGCTAGTGGGCAGCCACGACTA
CGCCCGTGAGGTGTGCGTTGGTAGGACGGTGTGTGGGTTGGGAGGGCACC
GTGGCGGTAGTAACCATGGCAGGTGTTCACCCACGTCGTAGGAAGCCGAG
CATGCGGGGGTGGGGACAACAGTATGTAGGTAGTAGATAATACATACTGC
TGTTGTCCATATATCGGCATGATAGCAAATTTGGCATCAAGGCTCCACTC
TAAATTCTAAACAAACCAAGCATTATTAAAGTTAAGATATGAACACTCCA
TTGACTCAATGATACAATCTATAATACTGCTGTACAAGCACACGGTTCCT
TCTCTGTGATTTCCGCTCATGCCTATATAGAGCTATACAAGCAGCGATCA
AACCAAGACACCAAGCGCCTTCGTTCAGTCTCTACGGACTCGTTCGTTCA
TCAACAAACAAGCTTCCGACTGCTGCTGCTCCCCACCGCGCGCGGTTGCT
GCCATGCATGTGACAACCAGTTGTCGAATCATCGGGGCGACGACTATGCT
GGGCGTGTCGGCCTACGGCTTGGTGACGCGCGCTCAGACTCCAATGGCAC
AACGGGGCAACCGCGCTTTCTTGCTGGGAGTTTCGGGGCTCTTCGCCGCG
GCAGGGATCGCGCGAGCGGTGTGGCCAGATAGCCATACCTTGGACGATAA
CAACAGCCGACGACCACAGCAGCAGCAGCAACAGCAGCCACCATGACGCC
GAGGCAAATATGTTGACATACTTAAATATCTCCGTTCGATTCACGTTCAT
GCCCCGCGCCGCTGCCTATGGATTGGAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig12109:2149..4426-

>mRNA_S-dermatodea_contig12109.1314.1 ID=mRNA_S-dermatodea_contig12109.1314.1|Name=mRNA_S-dermatodea_contig12109.1314.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at S-dermatodea_contig12109:2149..4426- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCTGGGAGCGCGAAGGACTCAGGAAAGAGTACCGATTGCTTGAGATG
TCTGGGAGCGCGAAGGACTCAGGAAAGAGTACCGATTGCTTGAGTTGTCG
AATCATCGGGGCGACGACTATGCTGGGCGTGTCGGCCTACGGCTTGGTGA
CGCGCGCTCAGACTCCAATGGCACAACGGGGCAACCGCGCTTTCTTGCTG
GGAGTTTCGGGGCTCTTCGCCGCGGCAGGGATCGCGCGAGCGGTGTGGCC
AGATAGCCATACCTTGGACGATAACAACAGCCGACGACCACAGCAGCAGC
AGCAACAGCAGCCACCATGATTGTCGAATCATCGGGGCGACGACTATGCT
GGGCGTGTCGGCCTACGGCTTGGTGACGCGCGCTCAGACTCCAATGGCAC
AACGGGGCAACCGCGCTTTCTTGCTGGGAGTTTCGGGGCTCTTCGCCGCG
GCAGGGATCGCGCGAGCGGTGTGGCCAGATAGCCATACCTTGGACGATAA
CAACAGCCGACGACCACAGCAGCAGCAGCAACAGCAGCCACCATGA
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